Wall clock time and date at job start Tue Mar 31 2020 23:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 119.99906 * 2 1 4 4 H 1.48503 * 109.47177 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46857 * 299.99879 * 3 2 1 6 6 H 1.48492 * 109.47220 * 59.99727 * 3 2 1 7 7 C 1.38811 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00527 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00031 * 0.02562 * 7 2 1 10 10 C 1.49291 * 127.10146 * 0.02562 * 9 7 2 11 11 C 1.56230 * 106.50880 * 188.64267 * 10 9 7 12 12 C 1.52129 * 100.80864 * 23.44981 * 11 10 9 13 13 N 1.46494 * 111.08472 * 73.95924 * 12 11 10 14 14 C 1.34775 * 120.00221 * 61.01640 * 13 12 11 15 15 O 1.21566 * 120.00153 * 359.97438 * 14 13 12 16 16 C 1.47767 * 120.00049 * 179.97438 * 14 13 12 17 17 N 1.32747 * 120.05708 * 359.72283 * 16 14 13 18 18 C 1.31727 * 122.12922 * 179.74641 * 17 16 14 19 19 C 1.38300 * 121.68823 * 0.53955 * 18 17 16 20 20 C 1.39025 * 119.09647 * 359.73377 * 19 18 17 21 21 N 1.37188 * 134.65480 * 180.02562 * 20 19 18 22 22 H 0.97002 * 125.06547 * 359.97438 * 21 20 19 23 23 C 1.36721 * 109.87768 * 179.97438 * 21 20 19 24 24 C 1.34565 * 109.95973 * 0.02562 * 23 21 20 25 25 C 1.40408 * 120.05898 * 179.97438 * 16 14 13 26 26 C 1.51219 * 122.11940 * 208.13909 * 12 11 10 27 27 C 1.55696 * 104.60658 * 141.26845 * 26 12 11 28 28 C 1.56273 * 105.93719 * 352.75194 * 27 26 12 29 29 C 1.42704 * 127.10387 * 179.71136 * 9 7 2 30 30 H 1.09003 * 108.16770 * 256.55465 * 29 9 7 31 31 H 0.96998 * 120.00243 * 359.97438 * 1 2 3 32 32 H 1.09007 * 110.04898 * 307.90677 * 10 9 7 33 33 H 1.09000 * 110.04572 * 69.37791 * 10 9 7 34 34 H 1.09004 * 111.15152 * 141.33681 * 11 10 9 35 35 H 1.08999 * 111.14609 * 265.52037 * 11 10 9 36 36 H 0.97000 * 119.99915 * 241.01134 * 13 12 11 37 37 H 1.07994 * 119.15363 * 180.29660 * 18 17 16 38 38 H 1.08003 * 120.45572 * 179.71472 * 19 18 17 39 39 H 1.07999 * 125.02126 * 179.97438 * 23 21 20 40 40 H 1.07996 * 126.50592 * 180.02562 * 24 23 21 41 41 H 1.09001 * 110.41308 * 260.04964 * 26 12 11 42 42 H 1.09005 * 110.41032 * 22.36849 * 26 12 11 43 43 H 1.09000 * 110.15534 * 111.87420 * 27 26 12 44 44 H 1.09006 * 110.15873 * 233.63285 * 27 26 12 45 45 H 1.08999 * 110.97437 * 93.85845 * 28 27 26 46 46 H 1.09002 * 110.97403 * 217.58732 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1558 -2.5728 -0.0005 11 6 -0.4134 -4.0971 0.2250 12 6 0.8800 -4.5061 0.9138 13 7 0.9139 -4.0280 2.2981 14 6 -0.0204 -4.4416 3.1770 15 8 -0.8917 -5.2110 2.8209 16 6 0.0141 -3.9598 4.5734 17 7 0.9682 -3.1239 4.9650 18 6 1.0350 -2.6652 6.1980 19 6 0.1171 -3.0384 7.1628 20 6 -0.9051 -3.9161 6.8198 21 7 -1.9562 -4.4830 7.4949 22 1 -2.1634 -4.3331 8.4306 23 6 -2.6684 -5.2907 6.6524 24 6 -2.1150 -5.2769 5.4259 25 6 -0.9590 -4.3894 5.4899 26 6 1.4384 -5.9075 0.8088 27 6 2.9784 -5.7089 0.6946 28 6 3.2032 -4.1690 0.5528 29 6 1.8809 -3.7027 -0.0047 30 1 1.7873 -4.1072 -1.0126 31 1 -0.4850 0.8400 0.0004 32 1 -0.6051 -1.9943 0.8068 33 1 -0.5704 -2.2615 -0.9593 34 1 -1.2733 -4.2587 0.8751 35 1 -0.5369 -4.6196 -0.7235 36 1 1.6089 -3.4139 2.5822 37 1 1.8292 -1.9832 6.4632 38 1 0.1934 -2.6536 8.1690 39 1 -3.5450 -5.8569 6.9305 40 1 -2.4617 -5.8189 4.5585 41 1 1.1945 -6.4818 1.7025 42 1 1.0506 -6.4057 -0.0798 43 1 3.4725 -6.0796 1.5928 44 1 3.3597 -6.2269 -0.1854 45 1 3.3910 -3.7110 1.5239 46 1 4.0166 -3.9556 -0.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992210359.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:02 Heat of formation + Delta-G solvation = 59.997439 kcal Electronic energy + Delta-G solvation = -30580.721834 eV Core-core repulsion = 26664.129836 eV Total energy + Delta-G solvation = -3916.591998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.60686 -41.79477 -39.63916 -38.67887 -36.16094 -34.36953 -33.64200 -33.12625 -31.70399 -31.43408 -30.09539 -28.54851 -27.37935 -26.00228 -25.55606 -23.53491 -22.77771 -22.11842 -21.57168 -21.19921 -20.10743 -19.49059 -18.54773 -18.30626 -17.36953 -17.00169 -16.45506 -16.38137 -16.19851 -15.84164 -15.76855 -15.63079 -15.42148 -15.19655 -14.87326 -14.18632 -14.08755 -14.03399 -13.82632 -13.66472 -13.54542 -13.03587 -12.96267 -12.85339 -12.72879 -12.60802 -12.15109 -12.08221 -11.99739 -11.76685 -11.54590 -11.33789 -11.17541 -10.93922 -10.85534 -10.71643 -10.41860 -9.87565 -9.85157 -8.85350 -8.84480 -7.81855 -5.17331 -0.49938 0.48022 1.46619 1.47459 1.57756 1.64566 1.90374 2.05502 2.28605 2.51798 3.01041 3.10467 3.30631 3.38813 3.63956 3.78388 3.88271 3.91207 4.04542 4.12631 4.16925 4.30485 4.39682 4.44599 4.47706 4.55701 4.59972 4.60191 4.66600 4.82592 4.92156 4.96900 5.00202 5.06034 5.09444 5.13056 5.25171 5.30220 5.46224 5.50823 5.57488 5.60345 5.61714 5.69382 5.82777 5.88177 6.20111 6.60714 6.62991 6.98757 7.06120 7.34853 7.79059 8.51933 9.30602 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010950 B = 0.004289 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.481370 B = 6526.014434 C = 7742.620864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.065 4.065 3 Si 0.974 3.026 4 H -0.261 1.261 5 H -0.296 1.296 6 H -0.297 1.297 7 C -0.229 4.229 8 H 0.089 0.911 9 N -0.596 5.596 10 C 0.193 3.807 11 C -0.130 4.130 12 C 0.135 3.865 13 N -0.671 5.671 14 C 0.564 3.436 15 O -0.559 6.559 16 C 0.097 3.903 17 N -0.492 5.492 18 C 0.077 3.923 19 C -0.138 4.138 20 C 0.105 3.895 21 N -0.570 5.570 22 H 0.440 0.560 23 C 0.088 3.912 24 C -0.220 4.220 25 C -0.134 4.134 26 C -0.106 4.106 27 C -0.101 4.101 28 C -0.112 4.112 29 C 0.146 3.854 30 H 0.022 0.978 31 H 0.243 0.757 32 H 0.020 0.980 33 H 0.002 0.998 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.406 0.594 37 H 0.189 0.811 38 H 0.179 0.821 39 H 0.226 0.774 40 H 0.144 0.856 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -12.866 17.492 21.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.258 4.258 3 Si 0.803 3.197 4 H -0.185 1.185 5 H -0.223 1.223 6 H -0.224 1.224 7 C -0.358 4.358 8 H 0.106 0.894 9 N -0.319 5.319 10 C 0.069 3.931 11 C -0.169 4.169 12 C 0.047 3.953 13 N -0.320 5.320 14 C 0.350 3.650 15 O -0.439 6.439 16 C -0.047 4.047 17 N -0.205 5.205 18 C -0.077 4.077 19 C -0.161 4.161 20 C -0.011 4.011 21 N -0.176 5.176 22 H 0.282 0.718 23 C -0.038 4.038 24 C -0.245 4.245 25 C -0.143 4.143 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.150 4.150 29 C 0.037 3.963 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.039 0.961 33 H 0.020 0.980 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.242 0.758 37 H 0.206 0.794 38 H 0.197 0.803 39 H 0.242 0.758 40 H 0.161 0.839 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.309 -12.890 16.732 21.123 hybrid contribution -0.449 1.601 0.603 1.769 sum -0.758 -11.288 17.335 20.700 Atomic orbital electron populations 1.70174 1.06521 1.24920 1.58662 1.25598 0.96350 1.00945 1.02876 0.85059 0.78500 0.79775 0.76332 1.18500 1.22333 1.22404 1.19454 0.90873 0.83246 1.42183 0.89368 1.43766 1.01796 1.00472 1.85851 1.21633 0.83433 0.90978 0.97100 1.22671 0.97682 0.96421 1.00142 1.21678 0.96998 0.95331 0.81285 1.45564 1.30066 1.47078 1.09243 1.18053 0.81474 0.80742 0.84703 1.90643 1.37001 1.37025 1.79207 1.20644 0.93295 0.96986 0.93771 1.67513 1.22699 1.09710 1.20613 1.22940 0.99266 0.98651 0.86844 1.21578 0.93376 0.98008 1.03103 1.18444 0.92870 0.98416 0.91338 1.41630 1.22817 1.39823 1.13342 0.71810 1.22689 0.97958 0.94715 0.88486 1.21952 0.97673 1.05463 0.99416 1.20195 0.98492 1.01686 0.93916 1.21889 0.96302 0.93804 1.02480 1.22742 0.94250 0.93792 1.03067 1.21940 0.96095 0.96331 1.00663 1.21161 0.94290 0.85254 0.95615 0.96025 0.94749 0.96119 0.98009 0.91666 0.89811 0.75806 0.79400 0.80334 0.75783 0.83861 0.92085 0.89509 0.90574 0.89226 0.92477 0.90656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.74 10.55 21.65 0.23 -59.51 16 2 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 3 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 4 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 6 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 7 C -0.23 -12.87 10.30 84.03 0.87 -12.00 16 8 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 9 N -0.60 -31.18 3.16 -667.23 -2.11 -33.28 16 10 C 0.19 10.38 5.33 86.96 0.46 10.84 16 11 C -0.13 -5.73 6.09 31.43 0.19 -5.54 16 12 C 0.13 5.31 0.42 4.45 0.00 5.31 16 13 N -0.67 -27.68 4.47 -422.02 -1.89 -29.56 16 14 C 0.56 23.56 7.19 86.76 0.62 24.18 16 15 O -0.56 -24.44 13.27 -3.92 -0.05 -24.49 16 16 C 0.10 3.66 6.78 42.06 0.29 3.94 16 17 N -0.49 -17.35 9.54 -184.49 -1.76 -19.12 16 18 C 0.08 1.99 11.13 84.72 0.94 2.93 16 19 C -0.14 -2.77 10.14 22.47 0.23 -2.54 16 20 C 0.10 2.45 7.34 39.24 0.29 2.74 16 21 N -0.57 -8.36 6.04 -187.43 -1.13 -9.49 16 22 H 0.44 2.52 8.96 -92.71 -0.83 1.69 16 23 C 0.09 1.42 11.82 83.09 0.98 2.40 16 24 C -0.22 -6.03 10.26 23.41 0.24 -5.79 16 25 C -0.13 -4.33 6.15 -20.03 -0.12 -4.45 16 26 C -0.11 -3.34 6.18 30.94 0.19 -3.15 16 27 C -0.10 -2.70 6.95 32.66 0.23 -2.47 16 28 C -0.11 -3.76 6.47 31.04 0.20 -3.56 16 29 C 0.15 6.11 2.71 46.71 0.13 6.24 16 30 H 0.02 0.94 7.99 -2.39 -0.02 0.92 16 31 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.02 1.27 7.05 -2.38 -0.02 1.25 16 33 H 0.00 0.10 7.98 -2.39 -0.02 0.08 16 34 H 0.06 3.02 6.27 -2.38 -0.01 3.01 16 35 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.41 17.50 6.94 -92.71 -0.64 16.85 16 37 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.18 1.85 8.06 -2.91 -0.02 1.82 16 39 H 0.23 1.29 8.06 -2.91 -0.02 1.26 16 40 H 0.14 4.36 7.23 -2.91 -0.02 4.34 16 41 H 0.06 2.00 7.74 -2.39 -0.02 1.98 16 42 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 43 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 45 H 0.06 2.02 7.20 -2.39 -0.02 2.01 16 46 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -80.64 367.05 1.08 -79.56 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: -0.44 Total: 31.20 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: 6.20 Total: 15.77 kcal Atomic # 7 Polarization: -144.30 SS G_CDS: -6.66 Total: -150.96 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.05 Total: -24.49 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -80.64 1.08 -79.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992210359.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.562 kcal (2) G-P(sol) polarization free energy of solvation -80.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds