Wall clock time and date at job start Tue Mar 31 2020 23:24:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39059 * 119.35471 * 2 1 4 4 C 1.35701 * 122.66969 * 180.02562 * 3 2 1 5 5 C 1.41021 * 120.59624 * 359.97438 * 4 3 2 6 6 N 1.32141 * 134.70454 * 180.02562 * 5 4 3 7 7 N 1.39975 * 108.89224 * 179.97438 * 6 5 4 8 8 H 0.97003 * 125.06866 * 179.97438 * 7 6 5 9 9 C 1.34247 * 109.87441 * 0.22820 * 7 6 5 10 10 C 1.37579 * 107.92436 * 359.63102 * 9 7 6 11 11 C 1.38459 * 119.35578 * 180.02562 * 2 1 3 12 12 C 1.47306 * 120.74012 * 359.96922 * 11 2 1 13 13 O 1.21634 * 119.99578 * 90.00251 * 12 11 2 14 14 N 1.34772 * 120.00353 * 270.00853 * 12 11 2 15 15 C 1.46498 * 120.00334 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.47419 * 179.97438 * 15 14 12 17 17 C 1.29456 * 117.68993 * 95.00029 * 16 15 14 18 18 C 1.50322 * 123.64792 * 180.85906 * 17 16 15 19 19 N 1.47009 * 109.16917 * 349.02426 * 18 17 16 20 20 C 1.36926 * 121.37327 * 222.97141 * 19 18 17 21 21 H 1.08006 * 120.00035 * 155.97364 * 20 19 18 22 22 C 1.38816 * 120.00394 * 335.97333 * 20 19 18 23 23 N 1.31620 * 119.99689 * 344.49532 * 22 20 19 24 24 Si 1.86797 * 120.00023 * 164.49981 * 22 20 19 25 25 H 1.48504 * 109.47328 * 94.45658 * 24 22 20 26 26 H 1.48507 * 109.46905 * 214.45340 * 24 22 20 27 27 H 1.48499 * 109.47266 * 334.45215 * 24 22 20 28 28 C 1.47336 * 117.24620 * 42.94268 * 19 18 17 29 29 C 1.49961 * 117.69566 * 274.74149 * 16 15 14 30 30 H 1.08999 * 109.46864 * 89.99319 * 1 2 3 31 31 H 1.08995 * 109.47115 * 209.99783 * 1 2 3 32 32 H 1.09001 * 109.46552 * 329.99919 * 1 2 3 33 33 H 1.07995 * 118.66839 * 0.02562 * 3 2 1 34 34 H 1.08005 * 119.70279 * 179.97438 * 4 3 2 35 35 H 1.07994 * 126.03629 * 179.75258 * 9 7 6 36 36 H 0.97003 * 120.00271 * 359.97438 * 14 12 11 37 37 H 1.09001 * 109.47028 * 299.99619 * 15 14 12 38 38 H 1.09003 * 109.46980 * 59.99628 * 15 14 12 39 39 H 1.07997 * 118.17784 * 0.88177 * 17 16 15 40 40 H 1.09006 * 109.52107 * 108.92752 * 18 17 16 41 41 H 1.09000 * 109.52016 * 229.11359 * 18 17 16 42 42 H 0.97001 * 119.99295 * 179.97438 * 23 22 20 43 43 H 1.09004 * 109.78101 * 57.81861 * 28 19 18 44 44 H 1.09003 * 109.77669 * 178.62201 * 28 19 18 45 45 H 1.09000 * 109.31650 * 281.29029 * 29 16 15 46 46 H 1.09002 * 109.31866 * 40.71346 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2905 -0.0005 5 6 4.3302 0.1202 -0.0005 6 7 5.6283 -0.1273 -0.0005 7 7 5.8255 -1.5131 0.0000 8 1 6.6900 -1.9530 -0.0002 9 6 4.6399 -2.1428 -0.0046 10 6 3.6519 -1.1853 0.0001 11 6 2.1858 -1.2068 -0.0005 12 6 1.4514 -2.4837 -0.0004 13 8 1.1478 -3.0107 -1.0538 14 7 1.1158 -3.0681 1.1667 15 6 0.3860 -4.3383 1.1668 16 6 0.1364 -4.7742 2.5877 17 6 -1.0003 -4.4610 3.1222 18 6 -1.3817 -4.8110 4.5334 19 7 -0.3993 -5.7594 5.0779 20 6 -0.7896 -6.8469 5.8126 21 1 -0.1496 -7.7147 5.8747 22 6 -2.0080 -6.8342 6.4778 23 7 -2.6450 -5.6974 6.6626 24 14 -2.7433 -8.4305 7.1106 25 1 -2.3587 -8.6235 8.5319 26 1 -4.2232 -8.3711 7.0020 27 1 -2.2327 -9.5659 6.3011 28 6 1.0226 -5.4917 4.7998 29 6 1.2199 -5.5454 3.2806 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6168 2.1281 0.0004 34 1 4.0235 2.2580 -0.0009 35 1 4.4884 -3.2120 -0.0092 36 1 1.3582 -2.6480 2.0068 37 1 -0.5668 -4.2099 0.6532 38 1 0.9765 -5.0967 0.6528 39 1 -1.7144 -3.9183 2.5206 40 1 -1.3919 -3.9072 5.1428 41 1 -2.3715 -5.2675 4.5407 42 1 -3.4965 -5.6886 7.1271 43 1 1.2927 -4.5049 5.1760 44 1 1.6413 -6.2513 5.2777 45 1 1.1944 -6.5826 2.9465 46 1 2.1881 -5.1124 3.0290 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000871154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:21 Heat of formation + Delta-G solvation = 96.959418 kcal Electronic energy + Delta-G solvation = -28676.738226 eV Core-core repulsion = 24761.749020 eV Total energy + Delta-G solvation = -3914.989207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.52929 -39.76755 -37.92468 -37.32784 -34.95540 -33.16934 -32.73255 -31.38432 -30.82101 -30.29019 -29.74741 -27.53316 -26.56063 -24.64574 -23.97864 -22.81997 -22.18541 -21.34547 -21.09291 -19.98202 -18.54799 -17.93337 -17.56564 -16.32382 -16.09711 -15.73857 -15.54454 -15.46568 -15.12395 -15.03893 -14.36699 -14.14063 -13.83963 -13.64983 -13.54033 -13.48818 -13.36599 -12.91932 -12.49182 -12.30348 -12.14627 -12.05514 -11.81488 -11.68954 -11.60866 -11.40514 -11.05766 -10.95356 -10.76198 -10.49503 -10.40784 -10.33964 -9.92308 -9.86959 -9.63795 -9.03614 -9.03377 -8.72228 -8.11104 -7.90077 -6.78935 -5.83921 -3.22638 0.15870 1.52001 1.98358 2.31974 2.52860 2.57269 3.35046 3.36308 3.42579 3.44759 3.54592 3.91442 4.34183 4.45987 4.60475 4.68457 4.84304 4.98353 5.09803 5.11437 5.24384 5.30646 5.35784 5.40634 5.48697 5.53329 5.66044 5.76333 5.85250 5.88482 6.01710 6.04912 6.09865 6.10861 6.27388 6.28841 6.38588 6.47174 6.48882 6.68076 6.72840 6.81950 7.11868 7.20810 7.22410 7.27699 7.50965 7.68622 7.78034 8.14469 8.33782 9.15311 9.78024 10.35838 11.26586 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018533 B = 0.002379 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.444616 B =11764.353752 C =12279.348937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.073 4.073 3 C -0.075 4.075 4 C -0.085 4.085 5 C 0.102 3.898 6 N -0.298 5.298 7 N -0.427 5.427 8 H 0.445 0.555 9 C 0.086 3.914 10 C -0.180 4.180 11 C -0.056 4.056 12 C 0.562 3.438 13 O -0.536 6.536 14 N -0.711 5.711 15 C 0.156 3.844 16 C -0.168 4.168 17 C -0.122 4.122 18 C 0.194 3.806 19 N -0.595 5.595 20 C -0.247 4.247 21 H 0.068 0.932 22 C -0.001 4.001 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.144 3.856 29 C -0.089 4.089 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.187 0.813 36 H 0.404 0.596 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.023 0.977 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.268 12.159 -13.558 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.075 4.075 3 C -0.097 4.097 4 C -0.105 4.105 5 C -0.053 4.053 6 N -0.127 5.127 7 N -0.129 5.129 8 H 0.290 0.710 9 C -0.069 4.069 10 C -0.191 4.191 11 C -0.061 4.061 12 C 0.347 3.653 13 O -0.413 6.413 14 N -0.362 5.362 15 C 0.034 3.966 16 C -0.168 4.168 17 C -0.143 4.143 18 C 0.069 3.931 19 N -0.318 5.318 20 C -0.376 4.376 21 H 0.086 0.914 22 C -0.199 4.199 23 N -0.554 5.554 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.017 3.983 29 C -0.128 4.128 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.204 0.796 36 H 0.239 0.761 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.111 0.889 42 H 0.064 0.936 43 H 0.041 0.959 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.087 12.282 -14.210 22.892 hybrid contribution -0.633 -1.262 0.677 1.566 sum 12.454 11.020 -13.533 21.440 Atomic orbital electron populations 1.20879 0.90408 1.03345 1.02942 1.19639 0.96128 0.91264 1.00506 1.20402 0.93640 0.97348 0.98346 1.19897 0.92509 0.95412 1.02729 1.20851 0.90378 0.94458 0.99606 1.77677 1.15528 0.90065 1.29385 1.46294 1.08311 1.05329 1.52980 0.71000 1.22514 0.85175 0.98950 1.00281 1.20103 0.92150 0.92354 1.14456 1.19991 0.90148 0.92909 1.03058 1.18157 0.78825 0.84080 0.84196 1.90832 1.54684 1.64508 1.31302 1.46300 1.57476 1.24138 1.08286 1.20509 0.96229 0.84179 0.95717 1.20474 0.97888 1.04130 0.94340 1.23295 0.95477 0.95921 0.99575 1.19766 0.94822 0.93008 0.85531 1.44124 0.99276 1.28213 1.60221 1.19171 1.03264 0.92265 1.22886 0.91390 1.24987 0.99713 0.96780 0.98407 1.70008 1.16923 1.23598 1.44910 0.86249 0.78485 0.83222 0.78648 1.21489 1.21535 1.20478 1.20986 0.87467 0.98162 0.91671 1.20778 0.94956 0.98788 0.98310 0.90620 0.91353 0.90764 0.84886 0.85036 0.79583 0.76093 0.91462 0.91503 0.88718 0.94061 0.88856 0.93587 0.95874 0.92511 0.91732 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.58 36.01 0.34 -0.77 16 2 C -0.07 -0.77 5.91 -104.23 -0.62 -1.39 16 3 C -0.07 -0.66 9.45 -40.18 -0.38 -1.04 16 4 C -0.08 -0.81 10.02 -39.44 -0.40 -1.21 16 5 C 0.10 1.19 7.49 -83.08 -0.62 0.57 16 6 N -0.30 -3.40 12.71 33.24 0.42 -2.98 16 7 N -0.43 -3.53 7.20 30.75 0.22 -3.31 16 8 H 0.45 1.95 8.96 -182.69 -1.64 0.31 16 9 C 0.09 0.79 12.00 -16.74 -0.20 0.59 16 10 C -0.18 -2.10 6.35 -103.15 -0.65 -2.75 16 11 C -0.06 -0.67 5.80 -102.75 -0.60 -1.27 16 12 C 0.56 7.61 5.67 -12.58 -0.07 7.54 16 13 O -0.54 -9.11 17.11 5.25 0.09 -9.02 16 14 N -0.71 -8.89 5.53 -62.60 -0.35 -9.24 16 15 C 0.16 2.19 5.66 -5.19 -0.03 2.16 16 16 C -0.17 -2.71 5.22 -100.99 -0.53 -3.23 16 17 C -0.12 -2.20 9.47 -35.78 -0.34 -2.54 16 18 C 0.19 4.42 5.23 -5.10 -0.03 4.39 16 19 N -0.60 -14.40 3.01 -173.56 -0.52 -14.92 16 20 C -0.25 -6.60 9.71 -15.06 -0.15 -6.74 16 21 H 0.07 1.78 7.88 -52.48 -0.41 1.37 16 22 C 0.00 -0.03 5.01 -17.43 -0.09 -0.11 16 23 N -0.91 -25.64 11.08 55.49 0.61 -25.03 16 24 Si 0.90 21.33 29.58 -169.99 -5.03 16.30 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.14 2.84 6.59 -3.44 -0.02 2.82 16 29 C -0.09 -1.46 5.95 -28.09 -0.17 -1.63 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.72 7.02 -51.93 -0.36 0.36 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.13 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.19 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.40 4.67 8.45 -40.82 -0.34 4.32 16 37 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 38 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 39 H 0.09 1.53 7.73 -52.49 -0.41 1.12 16 40 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.09 2.39 6.41 -51.93 -0.33 2.06 16 42 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 45 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -33.40 384.22 -10.97 -44.37 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.67 Total: 2.67 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: -4.54 Total: -4.64 kcal Atomic # 7 Polarization: -55.87 SS G_CDS: 0.39 Total: -55.48 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.40 -10.97 -44.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000871154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.333 kcal (2) G-P(sol) polarization free energy of solvation -33.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds