Wall clock time and date at job start Tue Mar 31 2020 23:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36325 * 119.74747 * 2 1 4 4 C 1.47520 * 120.16688 * 0.26363 * 3 2 1 5 5 O 1.21600 * 119.99974 * 6.81275 * 4 3 2 6 6 N 1.34773 * 119.99743 * 186.81556 * 4 3 2 7 7 C 1.46503 * 119.99933 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47471 * 180.02562 * 7 6 4 9 9 C 1.29451 * 117.69836 * 94.99446 * 8 7 6 10 10 C 1.50320 * 123.65127 * 180.86046 * 9 8 7 11 11 N 1.46998 * 109.16598 * 349.02331 * 10 9 8 12 12 C 1.36942 * 121.37754 * 222.97147 * 11 10 9 13 13 H 1.07992 * 120.00503 * 152.51946 * 12 11 10 14 14 C 1.38824 * 119.99532 * 332.52003 * 12 11 10 15 15 N 1.31618 * 120.00068 * 349.75394 * 14 12 11 16 16 Si 1.86799 * 119.99671 * 169.75406 * 14 12 11 17 17 H 1.48496 * 109.47201 * 59.99805 * 16 14 12 18 18 H 1.48502 * 109.46763 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47040 * 299.99846 * 16 14 12 20 20 C 1.47337 * 117.25350 * 42.94875 * 11 10 9 21 21 C 1.49972 * 117.68926 * 274.73726 * 8 7 6 22 22 C 1.46505 * 119.66582 * 180.23633 * 3 2 1 23 23 C 1.35537 * 119.04675 * 0.05592 * 22 3 2 24 24 C 1.41228 * 119.42745 * 359.96602 * 23 22 3 25 25 C 1.37905 * 132.97038 * 180.02562 * 24 23 22 26 26 N 1.33453 * 107.66136 * 179.97438 * 25 24 23 27 27 C 1.30743 * 109.93097 * 0.02562 * 26 25 24 28 28 N 1.35923 * 109.21287 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47276 * 276.78249 * 1 2 3 30 30 H 1.09001 * 109.47349 * 36.78279 * 1 2 3 31 31 H 1.08998 * 109.47328 * 156.78590 * 1 2 3 32 32 H 0.96999 * 120.00838 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46863 * 299.99962 * 7 6 4 34 34 H 1.09001 * 109.47372 * 59.99496 * 7 6 4 35 35 H 1.07996 * 118.17161 * 0.88303 * 9 8 7 36 36 H 1.08998 * 109.52357 * 108.93304 * 10 9 8 37 37 H 1.09005 * 109.52169 * 229.11457 * 10 9 8 38 38 H 0.96993 * 120.00242 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.77864 * 57.80544 * 20 11 10 40 40 H 1.09003 * 109.78213 * 178.61979 * 20 11 10 41 41 H 1.08998 * 109.31455 * 281.28913 * 21 8 7 42 42 H 1.08999 * 109.31718 * 40.71430 * 21 8 7 43 43 H 1.07998 * 120.47185 * 180.02562 * 22 3 2 44 44 H 1.08001 * 120.28046 * 179.97438 * 23 22 3 45 45 H 1.08003 * 126.16848 * 359.93910 * 25 24 23 46 46 H 1.08007 * 125.39363 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1833 1.1836 0.0000 4 6 1.4438 2.4601 0.0059 5 8 0.2348 2.4617 0.1356 6 7 2.1083 3.6244 -0.1326 7 6 1.3740 4.8921 -0.1263 8 6 2.3421 6.0344 -0.2969 9 6 2.5303 6.4899 -1.4939 10 6 3.4777 7.6107 -1.8192 11 7 3.9210 8.2459 -0.5699 12 6 4.0036 9.6078 -0.4527 13 1 3.8901 10.0745 0.5146 14 6 4.2331 10.3885 -1.5774 15 7 4.5708 9.8200 -2.7154 16 14 4.0628 12.2460 -1.4756 17 1 5.0178 12.7762 -0.4697 18 1 4.3581 12.8435 -2.8026 19 1 2.6764 12.5946 -1.0738 20 6 4.2723 7.3570 0.5513 21 6 3.0152 6.5670 0.9329 22 6 3.6484 1.1815 -0.0053 23 6 4.3047 -0.0043 -0.0112 24 6 3.5645 -1.2071 -0.0114 25 6 3.9313 -2.5365 -0.0161 26 7 2.8131 -3.2649 -0.0132 27 6 1.7688 -2.4784 -0.0076 28 7 2.1837 -1.1840 -0.0060 29 1 -0.3634 0.1214 1.0205 30 1 -0.3634 0.8231 -0.6153 31 1 -0.3634 -0.9444 -0.4051 32 1 3.0728 3.6232 -0.2358 33 1 0.6554 4.8998 -0.9458 34 1 0.8458 5.0013 0.8210 35 1 1.9754 6.0399 -2.3038 36 1 4.3415 7.2142 -2.3527 37 1 2.9703 8.3473 -2.4423 38 1 4.7309 10.3654 -3.5013 39 1 5.0637 6.6727 0.2455 40 1 4.6055 7.9508 1.4025 41 1 2.3245 7.2182 1.4685 42 1 3.2964 5.7354 1.5789 43 1 4.1974 2.1116 -0.0049 44 1 5.3844 -0.0291 -0.0155 45 1 4.9413 -2.9190 -0.0218 46 1 0.7394 -2.8053 -0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000875631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:51 Heat of formation + Delta-G solvation = 96.452011 kcal Electronic energy + Delta-G solvation = -28421.429448 eV Core-core repulsion = 24506.418239 eV Total energy + Delta-G solvation = -3915.011209 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.13298 -40.16138 -38.01055 -37.17907 -35.30764 -34.28544 -32.97682 -31.88915 -30.94329 -29.82903 -29.15528 -28.00135 -26.81779 -24.69386 -23.59234 -23.02036 -22.77670 -21.57957 -21.18947 -20.77866 -18.62295 -17.82926 -17.50083 -16.67088 -16.44386 -16.12259 -15.76539 -15.41750 -15.16193 -15.03260 -14.67013 -14.17363 -13.96109 -13.86968 -13.85406 -13.48136 -13.44102 -13.35033 -13.05691 -12.80118 -12.32920 -12.10892 -11.90621 -11.83271 -11.63804 -11.44356 -11.00713 -10.92736 -10.80563 -10.67591 -10.45981 -10.39245 -10.01105 -9.91613 -9.67311 -9.62665 -9.08638 -8.75351 -8.15257 -7.88672 -6.76544 -5.85857 -3.29340 0.27703 0.66085 2.03142 2.38247 2.52190 2.78279 3.22067 3.34494 3.37825 3.40090 3.40963 3.91348 4.17276 4.26516 4.39101 4.41387 4.43405 4.54313 4.96353 5.02695 5.11274 5.15175 5.23961 5.26602 5.34738 5.35003 5.49585 5.56028 5.71615 5.76723 5.78597 5.86035 5.99547 6.08341 6.10924 6.19788 6.25159 6.32010 6.44200 6.66355 6.73534 6.79770 7.08575 7.18059 7.24119 7.39466 7.47100 7.66471 7.75209 8.00658 8.34103 9.13951 9.75008 10.34233 11.24420 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026344 B = 0.002048 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.617585 B =13666.045016 C =14187.454764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.165 3.835 3 C -0.165 4.165 4 C 0.566 3.434 5 O -0.538 6.538 6 N -0.709 5.709 7 C 0.158 3.842 8 C -0.170 4.170 9 C -0.121 4.121 10 C 0.194 3.806 11 N -0.595 5.595 12 C -0.248 4.248 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.911 5.911 16 Si 0.907 3.093 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.144 3.856 21 C -0.090 4.090 22 C -0.096 4.096 23 C -0.085 4.085 24 C 0.010 3.990 25 C -0.021 4.021 26 N -0.452 5.452 27 C 0.151 3.849 28 N -0.376 5.376 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.065 0.935 32 H 0.402 0.598 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.255 0.745 39 H 0.023 0.977 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.183 0.817 46 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.915 -21.245 4.921 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.060 3.940 3 C -0.171 4.171 4 C 0.353 3.647 5 O -0.418 6.418 6 N -0.360 5.360 7 C 0.036 3.964 8 C -0.171 4.171 9 C -0.142 4.142 10 C 0.069 3.931 11 N -0.318 5.318 12 C -0.378 4.378 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.556 5.556 16 Si 0.737 3.263 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.017 3.983 21 C -0.129 4.129 22 C -0.117 4.117 23 C -0.104 4.104 24 C -0.098 4.098 25 C -0.173 4.173 26 N -0.165 5.165 27 C -0.124 4.124 28 N -0.049 5.049 29 H 0.112 0.888 30 H 0.139 0.861 31 H 0.084 0.916 32 H 0.238 0.762 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.071 0.929 43 H 0.162 0.838 44 H 0.170 0.830 45 H 0.200 0.800 46 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -4.892 -22.023 4.851 23.075 hybrid contribution 0.464 1.771 -0.125 1.835 sum -4.429 -20.252 4.726 21.262 Atomic orbital electron populations 1.21352 0.86333 1.04650 1.05603 1.20410 0.95470 0.82856 0.95266 1.20225 0.93754 0.92400 1.10739 1.17610 0.86764 0.83201 0.77089 1.90740 1.13551 1.87034 1.50487 1.46061 1.11503 1.05547 1.72849 1.20522 0.93398 0.80383 1.02105 1.20483 1.01788 0.98573 0.96210 1.23343 0.97231 0.97909 0.95712 1.19771 0.93310 0.91002 0.89000 1.44079 1.76177 1.01939 1.09615 1.19122 1.42976 0.81228 0.94465 0.91530 1.25105 0.99532 0.98259 0.96775 1.69945 1.50437 1.34396 1.00818 0.86293 0.78079 0.85151 0.76769 1.20861 1.21581 1.21002 1.21000 0.92698 0.92655 0.91946 1.20793 0.99116 0.98634 0.94384 1.22114 0.91540 0.98844 0.99195 1.20410 1.00324 0.88821 1.00857 1.19782 0.82349 0.97203 1.10475 1.22607 0.98145 0.87004 1.09542 1.69981 0.97925 1.33013 1.15565 1.25127 1.00651 0.76402 1.10253 1.43006 1.07626 1.06620 1.47669 0.88798 0.86122 0.91594 0.76224 0.91368 0.91269 0.88772 0.93986 0.88889 0.93469 0.95882 0.92431 0.91695 0.92946 0.83842 0.82975 0.80018 0.77075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.54 36.00 0.31 -0.74 16 2 C 0.16 1.67 6.83 -81.26 -0.55 1.11 16 3 C -0.16 -1.74 5.98 -103.47 -0.62 -2.36 16 4 C 0.57 6.87 7.67 -12.48 -0.10 6.78 16 5 O -0.54 -7.65 13.24 5.28 0.07 -7.58 16 6 N -0.71 -8.26 5.51 -62.53 -0.34 -8.60 16 7 C 0.16 2.13 5.66 -5.19 -0.03 2.10 16 8 C -0.17 -2.68 5.22 -100.99 -0.53 -3.20 16 9 C -0.12 -2.15 9.47 -35.78 -0.34 -2.49 16 10 C 0.19 4.37 5.17 -5.11 -0.03 4.34 16 11 N -0.59 -14.22 3.00 -173.56 -0.52 -14.75 16 12 C -0.25 -6.59 9.70 -15.05 -0.15 -6.73 16 13 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 14 C 0.00 0.04 5.11 -17.43 -0.09 -0.05 16 15 N -0.91 -25.47 11.02 55.49 0.61 -24.86 16 16 Si 0.91 21.20 29.57 -169.99 -5.03 16.17 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.14 2.79 6.59 -3.43 -0.02 2.77 16 21 C -0.09 -1.46 5.95 -28.08 -0.17 -1.62 16 22 C -0.10 -0.84 9.71 -37.22 -0.36 -1.20 16 23 C -0.08 -0.70 10.09 -39.41 -0.40 -1.10 16 24 C 0.01 0.10 6.78 -84.02 -0.57 -0.47 16 25 C -0.02 -0.20 12.00 -16.97 -0.20 -0.41 16 26 N -0.45 -4.99 11.19 -13.78 -0.15 -5.15 16 27 C 0.15 1.42 12.09 -89.36 -1.08 0.34 16 28 N -0.38 -3.81 2.94 -57.75 -0.17 -3.98 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 1.23 5.80 -51.93 -0.30 0.93 16 31 H 0.07 0.41 7.15 -51.93 -0.37 0.04 16 32 H 0.40 4.08 6.61 -40.82 -0.27 3.81 16 33 H 0.07 0.95 7.78 -51.93 -0.40 0.54 16 34 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 35 H 0.09 1.49 7.73 -52.49 -0.41 1.09 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 2.36 6.51 -51.93 -0.34 2.02 16 38 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.10 7.96 -51.93 -0.41 0.69 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.14 0.97 6.63 -52.49 -0.35 0.62 16 44 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 45 H 0.18 1.26 8.06 -52.48 -0.42 0.84 16 46 H 0.21 1.22 7.56 -52.48 -0.40 0.82 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.59 375.15 -10.98 -42.57 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -6.18 Total: 3.45 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -4.92 Total: -2.93 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: -0.58 Total: -57.34 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.07 Total: -7.58 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.59 -10.98 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000875631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.022 kcal (2) G-P(sol) polarization free energy of solvation -31.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds