Wall clock time and date at job start Tue Mar 31 2020 23:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.36325 * 119.74747 * 2 1 4 4 C 1.47520 * 120.16688 * 0.26363 * 3 2 1 5 5 O 1.21600 * 119.99974 * 6.81275 * 4 3 2 6 6 N 1.34773 * 119.99743 * 186.81556 * 4 3 2 7 7 C 1.46503 * 119.99933 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47471 * 180.02562 * 7 6 4 9 9 C 1.29451 * 117.69836 * 94.99446 * 8 7 6 10 10 C 1.50320 * 123.65127 * 180.86046 * 9 8 7 11 11 N 1.46998 * 109.16598 * 349.02331 * 10 9 8 12 12 C 1.36942 * 121.37754 * 222.97147 * 11 10 9 13 13 H 1.07992 * 120.00503 * 152.51946 * 12 11 10 14 14 C 1.38824 * 119.99532 * 332.52003 * 12 11 10 15 15 N 1.31618 * 120.00068 * 349.75394 * 14 12 11 16 16 Si 1.86799 * 119.99671 * 169.75406 * 14 12 11 17 17 H 1.48496 * 109.47201 * 59.99805 * 16 14 12 18 18 H 1.48502 * 109.46763 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47040 * 299.99846 * 16 14 12 20 20 C 1.47337 * 117.25350 * 42.94875 * 11 10 9 21 21 C 1.49972 * 117.68926 * 274.73726 * 8 7 6 22 22 C 1.46505 * 119.66582 * 180.23633 * 3 2 1 23 23 C 1.35537 * 119.04675 * 0.05592 * 22 3 2 24 24 C 1.41228 * 119.42745 * 359.96602 * 23 22 3 25 25 C 1.37905 * 132.97038 * 180.02562 * 24 23 22 26 26 N 1.33453 * 107.66136 * 179.97438 * 25 24 23 27 27 C 1.30743 * 109.93097 * 0.02562 * 26 25 24 28 28 N 1.35923 * 109.21287 * 359.97438 * 27 26 25 29 29 H 1.09002 * 109.47276 * 276.78249 * 1 2 3 30 30 H 1.09001 * 109.47349 * 36.78279 * 1 2 3 31 31 H 1.08998 * 109.47328 * 156.78590 * 1 2 3 32 32 H 0.96999 * 120.00838 * 359.97438 * 6 4 3 33 33 H 1.09001 * 109.46863 * 299.99962 * 7 6 4 34 34 H 1.09001 * 109.47372 * 59.99496 * 7 6 4 35 35 H 1.07996 * 118.17161 * 0.88303 * 9 8 7 36 36 H 1.08998 * 109.52357 * 108.93304 * 10 9 8 37 37 H 1.09005 * 109.52169 * 229.11457 * 10 9 8 38 38 H 0.96993 * 120.00242 * 179.97438 * 15 14 12 39 39 H 1.09002 * 109.77864 * 57.80544 * 20 11 10 40 40 H 1.09003 * 109.78213 * 178.61979 * 20 11 10 41 41 H 1.08998 * 109.31455 * 281.28913 * 21 8 7 42 42 H 1.08999 * 109.31718 * 40.71430 * 21 8 7 43 43 H 1.07998 * 120.47185 * 180.02562 * 22 3 2 44 44 H 1.08001 * 120.28046 * 179.97438 * 23 22 3 45 45 H 1.08003 * 126.16848 * 359.93910 * 25 24 23 46 46 H 1.08007 * 125.39363 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1833 1.1836 0.0000 4 6 1.4438 2.4601 0.0059 5 8 0.2348 2.4617 0.1356 6 7 2.1083 3.6244 -0.1326 7 6 1.3740 4.8921 -0.1263 8 6 2.3421 6.0344 -0.2969 9 6 2.5303 6.4899 -1.4939 10 6 3.4777 7.6107 -1.8192 11 7 3.9210 8.2459 -0.5699 12 6 4.0036 9.6078 -0.4527 13 1 3.8901 10.0745 0.5146 14 6 4.2331 10.3885 -1.5774 15 7 4.5708 9.8200 -2.7154 16 14 4.0628 12.2460 -1.4756 17 1 5.0178 12.7762 -0.4697 18 1 4.3581 12.8435 -2.8026 19 1 2.6764 12.5946 -1.0738 20 6 4.2723 7.3570 0.5513 21 6 3.0152 6.5670 0.9329 22 6 3.6484 1.1815 -0.0053 23 6 4.3047 -0.0043 -0.0112 24 6 3.5645 -1.2071 -0.0114 25 6 3.9313 -2.5365 -0.0161 26 7 2.8131 -3.2649 -0.0132 27 6 1.7688 -2.4784 -0.0076 28 7 2.1837 -1.1840 -0.0060 29 1 -0.3634 0.1214 1.0205 30 1 -0.3634 0.8231 -0.6153 31 1 -0.3634 -0.9444 -0.4051 32 1 3.0728 3.6232 -0.2358 33 1 0.6554 4.8998 -0.9458 34 1 0.8458 5.0013 0.8210 35 1 1.9754 6.0399 -2.3038 36 1 4.3415 7.2142 -2.3527 37 1 2.9703 8.3473 -2.4423 38 1 4.7309 10.3654 -3.5013 39 1 5.0637 6.6727 0.2455 40 1 4.6055 7.9508 1.4025 41 1 2.3245 7.2182 1.4685 42 1 3.2964 5.7354 1.5789 43 1 4.1974 2.1116 -0.0049 44 1 5.3844 -0.0291 -0.0155 45 1 4.9413 -2.9190 -0.0218 46 1 0.7394 -2.8053 -0.0046 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000875631.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:50 Heat of formation + Delta-G solvation = 79.625350 kcal Electronic energy + Delta-G solvation = -28422.159107 eV Core-core repulsion = 24506.418239 eV Total energy + Delta-G solvation = -3915.740868 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.83055 -41.10298 -39.41751 -38.01465 -36.53567 -35.16897 -34.40241 -32.85106 -32.37691 -31.41210 -29.92456 -28.93413 -28.06221 -26.09245 -24.70825 -24.25485 -23.70196 -22.78701 -22.29070 -21.64728 -19.58005 -19.29550 -18.50952 -17.47803 -17.24714 -17.18236 -16.99532 -16.96032 -16.24882 -15.96660 -15.80851 -15.42428 -15.27354 -15.11999 -14.78569 -14.57150 -14.51023 -14.14883 -14.03132 -13.89794 -13.72584 -13.41501 -13.25095 -12.91612 -12.73079 -12.62248 -12.59422 -12.46976 -12.25404 -12.07475 -11.72089 -11.67957 -11.41214 -11.25324 -10.94295 -10.68495 -10.42623 -10.03558 -9.64854 -8.68776 -8.56536 -7.87616 -5.33158 -0.46519 -0.00347 1.11810 1.42589 1.47801 1.49628 1.55943 1.59024 2.05045 2.38693 2.46119 2.51158 3.24515 3.30383 3.51714 3.58315 3.64414 3.68700 3.78311 3.86589 3.89804 3.99219 4.35022 4.43123 4.46056 4.53345 4.55820 4.59083 4.65891 4.71155 4.76787 4.85877 4.93403 4.93879 5.09448 5.12774 5.14187 5.24214 5.37014 5.42725 5.45403 5.51377 5.55026 5.62345 5.78059 6.04920 6.18208 6.36753 6.46214 6.76813 7.09154 7.15416 7.84390 8.38799 9.20280 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.026344 B = 0.002048 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.617585 B =13666.045016 C =14187.454764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.159 3.841 3 C -0.177 4.177 4 C 0.569 3.431 5 O -0.561 6.561 6 N -0.703 5.703 7 C 0.169 3.831 8 C -0.140 4.140 9 C -0.141 4.141 10 C 0.205 3.795 11 N -0.616 5.616 12 C -0.258 4.258 13 H 0.068 0.932 14 C -0.052 4.052 15 N -0.939 5.939 16 Si 0.968 3.032 17 H -0.275 1.275 18 H -0.295 1.295 19 H -0.280 1.280 20 C 0.138 3.862 21 C -0.084 4.084 22 C -0.104 4.104 23 C -0.081 4.081 24 C -0.009 4.009 25 C -0.029 4.029 26 N -0.481 5.481 27 C 0.150 3.850 28 N -0.383 5.383 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.411 0.589 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.015 0.985 37 H 0.055 0.945 38 H 0.250 0.750 39 H 0.030 0.970 40 H 0.057 0.943 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.163 0.837 44 H 0.181 0.819 45 H 0.204 0.796 46 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.154 -22.606 6.310 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.055 3.945 3 C -0.183 4.183 4 C 0.357 3.643 5 O -0.443 6.443 6 N -0.354 5.354 7 C 0.046 3.954 8 C -0.141 4.141 9 C -0.161 4.161 10 C 0.080 3.920 11 N -0.340 5.340 12 C -0.388 4.388 13 H 0.086 0.914 14 C -0.247 4.247 15 N -0.586 5.586 16 Si 0.797 3.203 17 H -0.201 1.201 18 H -0.221 1.221 19 H -0.206 1.206 20 C 0.013 3.987 21 C -0.123 4.123 22 C -0.124 4.124 23 C -0.100 4.100 24 C -0.117 4.117 25 C -0.180 4.180 26 N -0.194 5.194 27 C -0.125 4.125 28 N -0.056 5.056 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.248 0.752 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.180 0.820 44 H 0.198 0.802 45 H 0.220 0.780 46 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -5.111 -23.408 6.268 24.766 hybrid contribution 0.547 2.079 -0.479 2.203 sum -4.564 -21.329 5.789 22.567 Atomic orbital electron populations 1.21304 0.85546 1.05268 1.05409 1.20594 0.96114 0.82906 0.94918 1.20197 0.94705 0.91669 1.11721 1.17782 0.86492 0.83632 0.76413 1.90739 1.14619 1.87396 1.51504 1.45863 1.11878 1.04800 1.72877 1.20286 0.92622 0.80120 1.02348 1.20597 1.00322 0.97992 0.95179 1.22981 0.98164 0.97546 0.97415 1.19396 0.93075 0.91379 0.88127 1.44365 1.76755 1.01883 1.10982 1.19451 1.41948 0.82897 0.94482 0.91401 1.25837 1.00069 1.02187 0.96656 1.70116 1.51864 1.35412 1.01189 0.85326 0.78100 0.80508 0.76411 1.20084 1.22112 1.20577 1.21195 0.94561 0.92462 0.90508 1.20730 0.97332 0.99333 0.94901 1.22309 0.90718 0.99912 0.99464 1.20761 1.01673 0.87959 0.99643 1.20171 0.82621 0.97934 1.10942 1.23057 0.98908 0.87071 1.08992 1.69997 0.98785 1.33891 1.16767 1.25776 1.01673 0.76092 1.08933 1.43117 1.07854 1.06747 1.47873 0.88738 0.87742 0.89254 0.75159 0.91520 0.90772 0.86938 0.96740 0.92711 0.94121 0.95212 0.92405 0.91879 0.89284 0.81967 0.80185 0.77965 0.74241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 8.54 71.23 0.61 -1.25 16 2 C 0.16 2.98 6.83 41.40 0.28 3.26 16 3 C -0.18 -3.40 5.98 -19.12 -0.11 -3.51 16 4 C 0.57 12.73 7.67 86.69 0.67 13.39 16 5 O -0.56 -15.15 13.24 -4.03 -0.05 -15.21 16 6 N -0.70 -14.59 5.51 -470.00 -2.59 -17.18 16 7 C 0.17 4.13 5.66 85.63 0.48 4.61 16 8 C -0.14 -4.13 5.22 -15.13 -0.08 -4.21 16 9 C -0.14 -4.91 9.47 27.11 0.26 -4.65 16 10 C 0.21 9.52 5.17 85.42 0.44 9.96 16 11 N -0.62 -29.71 3.00 -703.03 -2.11 -31.82 16 12 C -0.26 -13.81 9.70 84.04 0.82 -13.00 16 13 H 0.07 3.53 7.85 -2.91 -0.02 3.51 16 14 C -0.05 -2.88 5.11 84.86 0.43 -2.44 16 15 N -0.94 -54.29 11.02 21.66 0.24 -54.05 16 16 Si 0.97 44.18 29.57 68.60 2.03 46.21 16 17 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 18 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 19 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 20 C 0.14 5.20 6.59 86.32 0.57 5.77 16 21 C -0.08 -2.50 5.95 29.72 0.18 -2.32 16 22 C -0.10 -1.56 9.71 23.80 0.23 -1.33 16 23 C -0.08 -1.14 10.09 22.38 0.23 -0.92 16 24 C -0.01 -0.17 6.78 38.81 0.26 0.10 16 25 C -0.03 -0.52 12.00 84.37 1.01 0.49 16 26 N -0.48 -9.95 11.19 -197.51 -2.21 -12.16 16 27 C 0.15 2.56 12.09 179.91 2.17 4.73 16 28 N -0.38 -7.10 2.94 -336.62 -0.99 -8.09 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.10 2.04 5.80 -2.39 -0.01 2.03 16 31 H 0.09 0.92 7.15 -2.39 -0.02 0.90 16 32 H 0.41 7.14 6.61 -92.71 -0.61 6.52 16 33 H 0.07 1.70 7.78 -2.39 -0.02 1.69 16 34 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 35 H 0.11 3.49 7.73 -2.91 -0.02 3.46 16 36 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 2.92 6.51 -2.38 -0.02 2.90 16 38 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.06 2.14 7.96 -2.39 -0.02 2.12 16 41 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.09 2.05 8.14 -2.39 -0.02 2.04 16 43 H 0.16 1.70 6.63 -2.91 -0.02 1.68 16 44 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.20 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.24 2.20 7.56 -2.91 -0.02 2.18 16 Total: -1.00 -69.73 375.15 3.17 -66.56 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.40 Total: 17.05 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 8.45 Total: 8.69 kcal Atomic # 7 Polarization: -115.64 SS G_CDS: -7.66 Total: -123.30 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.05 Total: -15.21 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -69.73 3.17 -66.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000875631.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.186 kcal (2) G-P(sol) polarization free energy of solvation -69.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds