Wall clock time and date at job start Tue Mar 31 2020 23:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.33817 * 126.08290 * 2 1 4 4 H 0.97005 * 124.98707 * 0.06367 * 3 2 1 5 5 N 1.39916 * 110.03024 * 180.02562 * 3 2 1 6 6 C 1.31923 * 109.06379 * 0.02562 * 5 3 2 7 7 C 1.41378 * 134.40179 * 180.02562 * 6 5 3 8 8 C 1.35191 * 119.93329 * 179.97438 * 7 6 5 9 9 C 1.41034 * 121.65474 * 359.97438 * 8 7 6 10 10 C 1.47520 * 119.39339 * 179.97438 * 9 8 7 11 11 O 1.21599 * 120.00296 * 179.97438 * 10 9 8 12 12 N 1.34780 * 119.99717 * 0.02562 * 10 9 8 13 13 C 1.46501 * 119.99942 * 179.97438 * 12 10 9 14 14 C 1.50696 * 109.47175 * 179.97438 * 13 12 10 15 15 C 1.29450 * 117.69740 * 95.00109 * 14 13 12 16 16 C 1.50318 * 123.65495 * 180.57514 * 15 14 13 17 17 N 1.47004 * 109.16539 * 349.01672 * 16 15 14 18 18 C 1.36943 * 121.37727 * 222.97044 * 17 16 15 19 19 H 1.08000 * 119.99761 * 155.98195 * 18 17 16 20 20 C 1.38806 * 120.00036 * 335.97653 * 18 17 16 21 21 N 1.31623 * 120.00139 * 344.49847 * 20 18 17 22 22 Si 1.86794 * 119.99900 * 164.49392 * 20 18 17 23 23 H 1.48502 * 109.46806 * 94.45976 * 22 20 18 24 24 H 1.48504 * 109.47168 * 214.45465 * 22 20 18 25 25 H 1.48497 * 109.47724 * 334.45813 * 22 20 18 26 26 C 1.47338 * 117.24789 * 42.95186 * 17 16 15 27 27 C 1.49970 * 117.69268 * 274.73808 * 14 13 12 28 28 C 1.38220 * 121.21435 * 0.27444 * 9 8 7 29 29 C 1.38540 * 126.08380 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47139 * 89.97301 * 1 2 3 31 31 H 1.08997 * 109.47026 * 209.97114 * 1 2 3 32 32 H 1.09001 * 109.47305 * 329.97516 * 1 2 3 33 33 H 1.08002 * 120.03339 * 359.94865 * 7 6 5 34 34 H 1.08005 * 119.17171 * 179.97438 * 8 7 6 35 35 H 0.96994 * 120.00200 * 359.97438 * 12 10 9 36 36 H 1.09001 * 109.46899 * 59.99584 * 13 12 10 37 37 H 1.08996 * 109.46928 * 300.00181 * 13 12 10 38 38 H 1.08002 * 118.17313 * 0.59527 * 15 14 13 39 39 H 1.08999 * 109.52640 * 108.92644 * 16 15 14 40 40 H 1.08999 * 109.52200 * 229.11635 * 16 15 14 41 41 H 0.96999 * 119.99965 * 179.97438 * 21 20 18 42 42 H 1.09000 * 109.78144 * 57.80744 * 26 17 16 43 43 H 1.08997 * 109.78103 * 178.61431 * 26 17 16 44 44 H 1.09003 * 109.31537 * 281.57662 * 27 14 13 45 45 H 1.08993 * 109.31856 * 41.00262 * 27 14 13 46 46 H 1.08005 * 120.32510 * 179.72006 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0815 0.0000 4 1 1.9804 1.9990 0.0009 5 7 3.6397 0.6946 -0.0006 6 6 3.7090 -0.6228 -0.0015 7 6 4.7697 -1.5576 -0.0020 8 6 4.5011 -2.8826 -0.0024 9 6 3.1775 -3.3695 -0.0020 10 6 2.9418 -4.8258 -0.0031 11 8 1.8051 -5.2577 -0.0023 12 7 3.9863 -5.6775 -0.0041 13 6 3.7522 -7.1237 -0.0046 14 6 5.0745 -7.8466 -0.0063 15 6 5.5556 -8.2235 1.1349 16 6 6.8670 -8.9417 1.2897 17 7 7.3469 -9.3613 -0.0349 18 6 7.8846 -10.6043 -0.2376 19 1 7.8728 -11.0434 -1.2243 20 6 8.4449 -11.2998 0.8249 21 7 8.7391 -10.6693 1.9423 22 14 8.7815 -13.1305 0.6692 23 1 10.1867 -13.3405 0.2372 24 1 8.5643 -13.7873 1.9832 25 1 7.8612 -13.7193 -0.3366 26 6 7.2249 -8.3894 -1.1356 27 6 5.7374 -8.0839 -1.3304 28 6 2.0971 -2.5074 -0.0067 29 6 2.3230 -1.1196 -0.0005 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3634 0.8898 0.5142 33 1 5.7934 -1.2136 -0.0023 34 1 5.3208 -3.5859 -0.0032 35 1 4.8930 -5.3330 -0.0044 36 1 3.1864 -7.3998 -0.8944 37 1 3.1874 -7.4006 0.8855 38 1 4.9827 -8.0103 2.0252 39 1 7.5968 -8.2732 1.7466 40 1 6.7294 -9.8189 1.9219 41 1 9.1303 -11.1554 2.6849 42 1 7.7590 -7.4741 -0.8803 43 1 7.6371 -8.8147 -2.0506 44 1 5.2582 -8.9275 -1.8274 45 1 5.6303 -7.1949 -1.9518 46 1 1.0894 -2.8960 -0.0108 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000940845.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:26 Heat of formation + Delta-G solvation = 70.909406 kcal Electronic energy + Delta-G solvation = -27945.553356 eV Core-core repulsion = 24029.434536 eV Total energy + Delta-G solvation = -3916.118820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.45963 -40.87851 -39.34971 -37.78574 -36.39685 -34.54016 -34.13938 -32.73497 -31.79112 -31.39159 -31.20039 -28.85119 -27.86036 -26.09410 -24.90229 -24.33712 -23.76352 -22.74126 -21.51643 -21.01899 -19.51904 -18.99137 -18.71785 -17.50023 -17.28820 -17.05999 -16.91655 -16.37092 -16.09285 -15.91991 -15.46113 -15.24682 -15.21224 -15.03723 -14.93326 -14.48688 -14.26491 -13.98198 -13.84308 -13.79850 -13.59754 -13.24262 -13.14799 -12.92270 -12.78197 -12.67820 -12.56788 -12.51405 -12.21445 -12.07598 -11.68410 -11.40450 -11.25637 -11.21379 -11.04508 -10.66636 -10.11784 -9.88972 -9.62632 -8.72594 -8.66207 -7.86672 -5.27476 -0.54397 0.35525 1.21420 1.25674 1.47716 1.49595 1.59172 1.68354 1.94699 2.44489 2.52764 2.88646 3.18128 3.30561 3.45579 3.65214 3.81948 3.88435 3.91775 4.00921 4.01850 4.23823 4.41224 4.48354 4.49467 4.56756 4.68690 4.69938 4.73038 4.79284 4.87785 4.95251 5.07192 5.09664 5.13724 5.24523 5.31743 5.33536 5.37876 5.40661 5.45936 5.51274 5.63519 5.70533 5.80284 6.14358 6.19767 6.35960 6.48136 6.59987 7.15531 7.24556 7.85823 8.39428 9.21923 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028174 B = 0.001920 C = 0.001859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.584642 B =14581.204568 C =15056.004741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.161 3.839 3 N -0.411 5.411 4 H 0.460 0.540 5 N -0.344 5.344 6 C 0.105 3.895 7 C -0.124 4.124 8 C -0.046 4.046 9 C -0.200 4.200 10 C 0.563 3.437 11 O -0.586 6.586 12 N -0.710 5.710 13 C 0.168 3.832 14 C -0.139 4.139 15 C -0.142 4.142 16 C 0.205 3.795 17 N -0.615 5.615 18 C -0.255 4.255 19 H 0.070 0.930 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.138 3.862 27 C -0.084 4.084 28 C 0.048 3.952 29 C -0.250 4.250 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.145 0.855 34 H 0.147 0.853 35 H 0.410 0.590 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.112 0.888 39 H 0.015 0.985 40 H 0.056 0.944 41 H 0.249 0.751 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 25.363 -4.740 31.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.019 3.981 3 N -0.113 5.113 4 H 0.308 0.692 5 N -0.171 5.171 6 C -0.049 4.049 7 C -0.145 4.145 8 C -0.068 4.068 9 C -0.204 4.204 10 C 0.353 3.647 11 O -0.468 6.468 12 N -0.361 5.361 13 C 0.045 3.955 14 C -0.139 4.139 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.385 4.385 19 H 0.088 0.912 20 C -0.251 4.251 21 N -0.586 5.586 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.220 1.220 25 H -0.196 1.196 26 C 0.013 3.987 27 C -0.123 4.123 28 C 0.026 3.974 29 C -0.260 4.260 30 H 0.128 0.872 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.248 0.752 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.032 0.968 40 H 0.075 0.925 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -17.497 26.105 -4.627 31.765 hybrid contribution 0.584 -1.277 0.401 1.461 sum -16.913 24.827 -4.227 30.337 Atomic orbital electron populations 1.20886 0.82522 1.06562 1.05943 1.22015 0.96174 0.86025 0.93929 1.46343 1.03849 1.09830 1.51246 0.69211 1.77611 0.94628 1.12191 1.32707 1.21336 0.95069 0.91303 0.97177 1.19928 0.97573 0.90733 1.06220 1.20805 0.95419 0.95581 0.95045 1.19377 0.94754 0.91612 1.14695 1.18421 0.84256 0.86780 0.75260 1.90730 1.23481 1.79711 1.52910 1.45941 1.09751 1.06059 1.74376 1.20249 0.94258 0.78967 1.02034 1.20604 0.96362 1.01542 0.95435 1.22952 0.97737 0.97664 0.97876 1.19404 0.89369 0.95992 0.87267 1.44409 1.70783 1.12819 1.05903 1.19509 1.30574 0.92759 0.95649 0.91211 1.25736 0.99374 1.02586 0.97359 1.70168 1.47209 1.35594 1.05636 0.85257 0.77808 0.80670 0.76704 1.21290 1.22017 1.19581 1.21149 0.94436 0.91971 0.91154 1.20698 0.96086 1.01402 0.94121 1.20751 0.99154 0.89621 0.87850 1.19474 0.92782 0.94092 1.19614 0.87225 0.88274 0.87373 0.83680 0.83567 0.75237 0.91123 0.91882 0.86976 0.96758 0.92534 0.94161 0.95319 0.92255 0.91812 0.89331 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 10.44 71.24 0.74 0.53 16 2 C 0.16 1.83 7.28 42.33 0.31 2.14 16 3 N -0.41 -4.84 7.17 -46.73 -0.34 -5.18 16 4 H 0.46 1.61 8.96 -213.43 -1.91 -0.31 16 5 N -0.34 -7.14 12.69 -48.55 -0.62 -7.76 16 6 C 0.11 2.32 7.49 42.27 0.32 2.63 16 7 C -0.12 -2.50 10.05 22.34 0.22 -2.27 16 8 C -0.05 -0.90 9.39 22.25 0.21 -0.69 16 9 C -0.20 -4.57 5.86 -20.15 -0.12 -4.68 16 10 C 0.56 15.25 7.75 86.69 0.67 15.93 16 11 O -0.59 -19.56 16.26 -4.03 -0.07 -19.62 16 12 N -0.71 -17.66 5.49 -470.01 -2.58 -20.24 16 13 C 0.17 4.72 5.66 85.63 0.48 5.20 16 14 C -0.14 -4.47 5.22 -15.14 -0.08 -4.55 16 15 C -0.14 -5.28 9.47 27.11 0.26 -5.02 16 16 C 0.20 9.85 5.23 85.42 0.45 10.30 16 17 N -0.62 -30.65 3.01 -703.41 -2.12 -32.77 16 18 C -0.25 -14.00 9.71 84.03 0.82 -13.18 16 19 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 20 C -0.06 -3.13 5.01 84.86 0.42 -2.70 16 21 N -0.94 -55.45 11.08 21.65 0.24 -55.21 16 22 Si 0.97 45.15 29.58 68.60 2.03 47.17 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C 0.14 5.46 6.58 86.25 0.57 6.03 16 27 C -0.08 -2.70 5.94 29.65 0.18 -2.52 16 28 C 0.05 0.99 9.64 22.84 0.22 1.21 16 29 C -0.25 -4.72 6.25 -20.26 -0.13 -4.84 16 30 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 32 H 0.11 -0.32 8.14 -2.39 -0.02 -0.34 16 33 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.15 2.28 6.27 -2.91 -0.02 2.26 16 35 H 0.41 8.70 6.39 -92.71 -0.59 8.11 16 36 H 0.07 1.99 8.11 -2.39 -0.02 1.97 16 37 H 0.06 1.86 7.78 -2.39 -0.02 1.84 16 38 H 0.11 3.75 7.74 -2.91 -0.02 3.73 16 39 H 0.01 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 3.10 6.41 -2.39 -0.02 3.08 16 41 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 44 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 45 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.14 2.71 7.58 -2.91 -0.02 2.69 16 Total: -1.00 -76.38 382.02 0.62 -75.75 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -1.47 Total: 14.36 kcal Atomic # 6 Polarization: -2.05 SS G_CDS: 5.54 Total: 3.49 kcal Atomic # 7 Polarization: -115.75 SS G_CDS: -5.41 Total: -121.16 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.07 Total: -19.62 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -76.38 0.62 -75.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000940845.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.661 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds