Wall clock time and date at job start Tue Mar 31 2020 23:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40168 * 119.94238 * 2 1 4 4 C 1.36289 * 119.60914 * 179.60285 * 3 2 1 5 5 C 1.40652 * 119.38289 * 0.65218 * 4 3 2 6 6 N 1.33198 * 131.81717 * 179.25568 * 5 4 3 7 7 C 1.32333 * 109.81434 * 180.02562 * 6 5 4 8 8 C 1.38522 * 108.21204 * 0.02562 * 7 6 5 9 9 C 1.41818 * 126.78230 * 179.97438 * 8 7 6 10 10 O 1.21780 * 119.99543 * 174.51634 * 9 8 7 11 11 N 1.34776 * 120.00355 * 354.51990 * 9 8 7 12 12 C 1.46494 * 119.99950 * 184.44789 * 11 9 8 13 13 C 1.50705 * 109.46820 * 179.97438 * 12 11 9 14 14 C 1.29455 * 117.69135 * 94.99963 * 13 12 11 15 15 C 1.50321 * 123.64625 * 180.57388 * 14 13 12 16 16 N 1.47006 * 109.16983 * 349.28531 * 15 14 13 17 17 C 1.36939 * 121.37172 * 222.96760 * 16 15 14 18 18 H 1.08002 * 119.99317 * 154.06099 * 17 16 15 19 19 C 1.38813 * 120.00310 * 334.06440 * 17 16 15 20 20 N 1.31617 * 119.99902 * 357.66410 * 19 17 16 21 21 Si 1.86801 * 119.99780 * 177.66731 * 19 17 16 22 22 H 1.48501 * 109.47140 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46940 * 119.99601 * 21 19 17 24 24 H 1.48495 * 109.47168 * 239.99784 * 21 19 17 25 25 C 1.47338 * 117.24996 * 42.94455 * 16 15 14 26 26 C 1.49963 * 117.68885 * 275.21819 * 13 12 11 27 27 N 1.36577 * 119.57197 * 359.51790 * 5 4 3 28 28 C 1.35261 * 119.93175 * 180.02562 * 2 1 3 29 29 H 1.09008 * 109.46995 * 269.98123 * 1 2 3 30 30 H 1.08997 * 109.46898 * 29.97333 * 1 2 3 31 31 H 1.08994 * 109.47246 * 149.97864 * 1 2 3 32 32 H 1.08005 * 120.19480 * 0.02562 * 3 2 1 33 33 H 1.08007 * 120.30482 * 179.97438 * 4 3 2 34 34 H 1.07997 * 125.89089 * 179.97438 * 7 6 5 35 35 H 0.96999 * 119.99564 * 4.44590 * 11 9 8 36 36 H 1.09001 * 109.47343 * 60.00019 * 12 11 9 37 37 H 1.09003 * 109.47167 * 299.99534 * 12 11 9 38 38 H 1.07995 * 118.17700 * 0.86268 * 14 13 12 39 39 H 1.09000 * 109.52145 * 109.19532 * 15 14 13 40 40 H 1.09010 * 109.52286 * 229.37609 * 15 14 13 41 41 H 0.97001 * 119.99332 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.77827 * 57.81238 * 25 16 15 43 43 H 1.08998 * 109.77957 * 178.61951 * 25 16 15 44 44 H 1.08997 * 109.43925 * 40.82837 * 26 13 12 45 45 H 1.08995 * 109.13642 * 281.43157 * 26 13 12 46 46 H 1.08002 * 119.68176 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2066 1.2146 0.0000 4 6 3.5694 1.2067 0.0082 5 6 4.2525 -0.0229 0.0026 6 7 5.5515 -0.3171 -0.0047 7 6 5.7139 -1.6304 -0.0083 8 6 4.4612 -2.2216 -0.0036 9 6 4.1780 -3.6112 -0.0057 10 8 3.0282 -3.9984 0.0998 11 7 5.1812 -4.5033 -0.1243 12 6 4.8814 -5.9337 -0.2245 13 6 6.1678 -6.7091 -0.3478 14 6 6.6836 -7.1950 0.7356 15 6 7.9665 -7.9776 0.7690 16 7 8.3680 -8.3054 -0.6067 17 6 8.8393 -9.5486 -0.9347 18 1 8.7361 -9.9158 -1.9451 19 6 9.4495 -10.3368 0.0314 20 7 9.6164 -9.8714 1.2512 21 14 10.0337 -12.0579 -0.3999 22 1 9.7312 -12.3405 -1.8260 23 1 11.4988 -12.1537 -0.1767 24 1 9.3363 -13.0474 0.4601 25 6 8.2419 -7.2413 -1.6179 26 6 6.7625 -6.8592 -1.7163 27 7 3.5414 -1.1889 -0.0009 28 6 2.1819 -1.1722 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5141 32 1 1.6688 2.1512 0.0004 33 1 4.1199 2.1360 0.0079 34 1 6.6599 -2.1514 -0.0146 35 1 6.1018 -4.1982 -0.1434 36 1 4.2628 -6.1146 -1.1036 37 1 4.3465 -6.2563 0.6688 38 1 6.1607 -7.0328 1.6665 39 1 8.7453 -7.3803 1.2432 40 1 7.8173 -8.8979 1.3340 41 1 10.0431 -10.4221 1.9261 42 1 8.8277 -6.3734 -1.3152 43 1 8.5935 -7.6061 -2.5830 44 1 6.6686 -5.9179 -2.2578 45 1 6.2241 -7.6379 -2.2565 46 1 1.6356 -2.1039 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000946045.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:28 Heat of formation + Delta-G solvation = 72.215573 kcal Electronic energy + Delta-G solvation = -28248.403841 eV Core-core repulsion = 24332.341661 eV Total energy + Delta-G solvation = -3916.062180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.03435 -40.76223 -39.31478 -38.83415 -36.49202 -34.81161 -34.57388 -33.25664 -32.65444 -31.42051 -30.57339 -28.40449 -27.83691 -26.22532 -24.85789 -24.28012 -23.74983 -23.18868 -22.74772 -21.60233 -19.71136 -19.36563 -18.00033 -17.80686 -17.43763 -17.25498 -17.03469 -16.77049 -16.22837 -16.08215 -15.72072 -15.56978 -15.34759 -15.18939 -14.98423 -14.72284 -14.48885 -14.30909 -13.88373 -13.62141 -13.36526 -13.29302 -13.25100 -12.93919 -12.74551 -12.66766 -12.63134 -12.62693 -12.18359 -12.03892 -11.91769 -11.73658 -11.63788 -11.25198 -11.12203 -10.73021 -10.26020 -9.84446 -9.64389 -9.00624 -8.70318 -7.85007 -5.32199 -0.40281 -0.24972 1.03827 1.18368 1.40477 1.47304 1.48260 1.58330 2.22647 2.39541 2.48844 2.50760 3.06757 3.31565 3.37461 3.61904 3.65666 3.78112 3.85667 3.88625 3.94792 3.97812 4.19996 4.40260 4.44406 4.54298 4.60490 4.66643 4.74593 4.80676 4.81926 4.87038 4.93101 4.93831 5.11968 5.17396 5.21748 5.23981 5.27425 5.34356 5.44526 5.48741 5.57907 5.61803 5.78249 5.83137 6.19216 6.38282 6.39262 6.56703 7.05162 7.16317 7.84897 8.38072 9.21053 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.030548 B = 0.001967 C = 0.001913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.367502 B =14231.122575 C =14635.778389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.093 4.093 3 C -0.066 4.066 4 C -0.096 4.096 5 C 0.222 3.778 6 N -0.522 5.522 7 C 0.115 3.885 8 C -0.178 4.178 9 C 0.598 3.402 10 O -0.594 6.594 11 N -0.700 5.700 12 C 0.173 3.827 13 C -0.143 4.143 14 C -0.139 4.139 15 C 0.199 3.801 16 N -0.618 5.618 17 C -0.251 4.251 18 H 0.071 0.929 19 C -0.057 4.057 20 N -0.942 5.942 21 Si 0.972 3.028 22 H -0.267 1.267 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.138 3.862 26 C -0.084 4.084 27 N -0.326 5.326 28 C 0.033 3.967 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.193 0.807 33 H 0.181 0.819 34 H 0.215 0.785 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.249 0.751 42 H 0.030 0.970 43 H 0.060 0.940 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.821 25.140 -3.262 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.090 4.090 4 C -0.116 4.116 5 C -0.017 4.017 6 N -0.241 5.241 7 C -0.047 4.047 8 C -0.292 4.292 9 C 0.389 3.611 10 O -0.478 6.478 11 N -0.351 5.351 12 C 0.050 3.950 13 C -0.144 4.144 14 C -0.159 4.159 15 C 0.074 3.926 16 N -0.342 5.342 17 C -0.381 4.381 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.590 5.590 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.219 1.219 24 H -0.220 1.220 25 C 0.013 3.987 26 C -0.123 4.123 27 N 0.007 4.993 28 C -0.092 4.092 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.089 0.911 32 H 0.210 0.790 33 H 0.198 0.802 34 H 0.232 0.768 35 H 0.250 0.750 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.030 0.970 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.106 0.894 45 H 0.080 0.920 46 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -17.940 25.247 -3.122 31.129 hybrid contribution 0.604 -2.013 0.271 2.120 sum -17.335 23.234 -2.851 29.128 Atomic orbital electron populations 1.20841 0.86204 1.04951 1.04252 1.20128 0.99245 0.90760 0.99414 1.21647 0.92699 0.99583 0.95058 1.20813 0.94721 0.94287 1.01740 1.21776 0.87810 0.88203 1.03894 1.70518 1.13547 1.15506 1.24563 1.23641 0.96745 0.89708 0.94589 1.19788 0.90026 0.89492 1.29854 1.15552 0.85019 0.84194 0.76354 1.90770 1.21672 1.81637 1.53732 1.45626 1.09522 1.06214 1.73695 1.20246 0.94600 0.78310 1.01814 1.20553 0.96714 1.01353 0.95733 1.23050 0.97769 0.97051 0.98047 1.19594 0.89631 0.96897 0.86471 1.44406 1.75129 1.09195 1.05442 1.19585 1.29671 0.92591 0.96300 0.91098 1.25856 0.99680 1.03013 0.96589 1.70108 1.48159 1.37515 1.03173 0.85122 0.77252 0.79728 0.77883 1.19096 1.21906 1.21958 1.21151 0.94303 0.90634 0.92608 1.20693 0.96641 1.01372 0.93579 1.42482 1.06639 1.07918 1.42296 1.22069 0.80390 1.02322 1.04422 0.89233 0.87873 0.91076 0.79024 0.80163 0.76811 0.75031 0.91060 0.91865 0.87210 0.96965 0.91007 0.94162 0.95148 0.92193 0.89386 0.91966 0.82032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.00 71.24 0.71 0.14 16 2 C -0.09 -1.12 5.85 -20.08 -0.12 -1.24 16 3 C -0.07 -0.56 9.74 22.28 0.22 -0.35 16 4 C -0.10 -1.31 10.10 22.40 0.23 -1.08 16 5 C 0.22 5.05 7.77 134.01 1.04 6.09 16 6 N -0.52 -13.23 11.25 -192.74 -2.17 -15.40 16 7 C 0.12 2.69 11.32 84.69 0.96 3.65 16 8 C -0.18 -4.72 6.83 39.08 0.27 -4.45 16 9 C 0.60 17.31 7.59 85.13 0.65 17.95 16 10 O -0.59 -20.56 15.37 -4.61 -0.07 -20.63 16 11 N -0.70 -17.83 5.52 -475.67 -2.63 -20.46 16 12 C 0.17 4.91 5.66 85.64 0.48 5.39 16 13 C -0.14 -4.62 5.23 -15.14 -0.08 -4.70 16 14 C -0.14 -5.21 9.47 27.10 0.26 -4.95 16 15 C 0.20 9.62 5.23 85.42 0.45 10.07 16 16 N -0.62 -30.71 3.02 -703.37 -2.12 -32.83 16 17 C -0.25 -13.73 9.74 84.03 0.82 -12.92 16 18 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 19 C -0.06 -3.19 5.28 84.86 0.45 -2.74 16 20 N -0.94 -55.20 10.49 21.65 0.23 -54.97 16 21 Si 0.97 45.00 29.55 68.60 2.03 47.02 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 C 0.14 5.44 6.58 86.26 0.57 6.01 16 26 C -0.08 -2.70 5.94 29.65 0.18 -2.52 16 27 N -0.33 -8.03 2.96 -344.20 -1.02 -9.05 16 28 C 0.03 0.67 10.13 83.37 0.84 1.51 16 29 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.10 0.06 8.09 -2.39 -0.02 0.04 16 31 H 0.07 0.47 8.07 -2.39 -0.02 0.45 16 32 H 0.19 -0.07 8.06 -2.91 -0.02 -0.10 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.22 3.54 7.38 -2.91 -0.02 3.52 16 35 H 0.41 8.85 7.25 -92.71 -0.67 8.17 16 36 H 0.07 2.01 8.11 -2.39 -0.02 1.99 16 37 H 0.06 1.89 7.78 -2.39 -0.02 1.88 16 38 H 0.11 3.74 7.73 -2.91 -0.02 3.72 16 39 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 40 H 0.07 3.98 6.10 -2.38 -0.01 3.97 16 41 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 44 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 46 H 0.16 3.65 6.82 -2.91 -0.02 3.63 16 Total: -1.00 -75.10 380.23 2.50 -72.60 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.34 Total: 17.86 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 7.92 Total: 15.86 kcal Atomic # 7 Polarization: -125.01 SS G_CDS: -7.71 Total: -132.72 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.07 Total: -20.63 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -75.10 2.50 -72.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000946045.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.815 kcal (2) G-P(sol) polarization free energy of solvation -75.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds