Wall clock time and date at job start Tue Mar 31 2020 23:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39741 * 119.42925 * 2 1 4 4 C 1.38940 * 119.29755 * 180.30514 * 3 2 1 5 5 C 1.47224 * 120.86074 * 179.97438 * 4 3 2 6 6 O 1.21632 * 120.00088 * 179.97438 * 5 4 3 7 7 N 1.34782 * 120.00184 * 359.95662 * 5 4 3 8 8 C 1.46498 * 120.00185 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47112 * 180.02562 * 8 7 5 10 10 C 1.29445 * 117.69526 * 95.00093 * 9 8 7 11 11 C 1.50323 * 123.65338 * 180.85870 * 10 9 8 12 12 N 1.47008 * 109.16045 * 349.01973 * 11 10 9 13 13 C 1.36944 * 121.37247 * 222.96394 * 12 11 10 14 14 H 1.08003 * 119.99724 * 155.97611 * 13 12 11 15 15 C 1.38806 * 120.00352 * 335.98306 * 13 12 11 16 16 N 1.31622 * 119.99797 * 344.49716 * 15 13 12 17 17 Si 1.86804 * 120.00026 * 164.49060 * 15 13 12 18 18 H 1.48497 * 109.46688 * 94.45787 * 17 15 13 19 19 H 1.48500 * 109.46802 * 214.45405 * 17 15 13 20 20 H 1.48494 * 109.46981 * 334.45461 * 17 15 13 21 21 C 1.47337 * 117.25262 * 42.95051 * 12 11 10 22 22 C 1.49965 * 117.69068 * 274.73724 * 9 8 7 23 23 C 1.46548 * 118.28042 * 359.92878 * 4 3 2 24 24 N 1.31975 * 132.72443 * 180.02562 * 23 4 3 25 25 C 1.33750 * 109.17285 * 180.02562 * 24 23 4 26 26 C 1.34955 * 108.60304 * 0.02562 * 25 24 23 27 27 N 1.37000 * 107.15034 * 359.97438 * 26 25 24 28 28 C 1.35110 * 119.43272 * 180.27039 * 2 1 3 29 29 H 1.09003 * 109.46774 * 269.72783 * 1 2 3 30 30 H 1.08995 * 109.47312 * 29.72684 * 1 2 3 31 31 H 1.09003 * 109.46698 * 149.73075 * 1 2 3 32 32 H 1.08011 * 120.34823 * 0.25637 * 3 2 1 33 33 H 0.96994 * 119.99786 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.47016 * 300.00005 * 8 7 5 35 35 H 1.09000 * 109.47426 * 59.99468 * 8 7 5 36 36 H 1.08005 * 118.17618 * 0.87668 * 10 9 8 37 37 H 1.09001 * 109.52586 * 108.92192 * 11 10 9 38 38 H 1.09002 * 109.52509 * 229.11760 * 11 10 9 39 39 H 0.97003 * 119.99669 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.77815 * 57.80752 * 21 12 11 41 41 H 1.09001 * 109.78238 * 178.61570 * 21 12 11 42 42 H 1.09004 * 109.31727 * 281.29137 * 22 9 8 43 43 H 1.08998 * 109.31765 * 40.71562 * 22 9 8 44 44 H 1.07997 * 125.69666 * 179.97438 * 25 24 23 45 45 H 1.07997 * 126.42460 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.13742 * 359.72711 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2139 -0.0065 5 6 4.3411 2.4760 -0.0072 6 8 5.5572 2.4549 -0.0124 7 7 3.6875 3.6547 -0.0025 8 6 4.4419 4.9106 -0.0039 9 6 3.4826 6.0728 0.0028 10 6 3.1821 6.5983 1.1470 11 6 2.2273 7.7478 1.3107 12 7 1.9252 8.3161 -0.0110 13 6 1.8800 9.6701 -0.2113 14 1 2.0449 10.0756 -1.1986 15 6 1.6222 10.5212 0.8544 16 7 1.1255 10.0412 1.9748 17 14 1.9804 12.3480 0.6986 18 1 0.7474 13.0599 0.2769 19 1 2.4335 12.8771 2.0101 20 1 3.0451 12.5589 -0.3148 21 6 1.6735 7.3690 -1.1112 22 6 2.9481 6.5428 -1.3172 23 6 4.2744 -0.0782 -0.0114 24 7 5.5516 -0.4104 -0.0174 25 6 5.6588 -1.7436 -0.0205 26 6 4.4184 -2.2752 -0.0170 27 7 3.5314 -1.2311 -0.0110 28 6 2.1709 -1.1767 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8876 -0.5180 32 1 1.6499 2.1504 0.0042 33 1 2.7178 3.6715 0.0017 34 1 5.0734 4.9560 0.8835 35 1 5.0656 4.9588 -0.8965 36 1 3.6433 6.1883 2.0334 37 1 1.3064 7.3933 1.7738 38 1 2.6821 8.5123 1.9406 39 1 0.9451 10.6361 2.7194 40 1 0.8426 6.7136 -0.8507 41 1 1.4396 7.9174 -2.0237 42 1 3.7016 7.1536 -1.8145 43 1 2.7188 5.6792 -1.9415 44 1 6.5835 -2.3014 -0.0259 45 1 4.1713 -3.3265 -0.0187 46 1 1.6077 -2.0983 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000998720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:31 Heat of formation + Delta-G solvation = 100.594772 kcal Electronic energy + Delta-G solvation = -28413.707602 eV Core-core repulsion = 24498.876036 eV Total energy + Delta-G solvation = -3914.831566 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.98251 -39.67533 -38.04055 -37.68353 -34.92659 -33.92609 -32.94348 -32.30031 -30.87181 -29.76664 -29.14645 -27.14822 -26.96595 -25.00443 -23.90872 -22.79544 -22.41526 -21.82126 -21.10569 -20.60512 -18.38681 -17.79173 -17.51305 -16.88789 -16.24608 -15.93177 -15.66560 -15.27865 -15.18609 -14.81425 -14.38593 -14.23395 -13.95418 -13.93172 -13.79480 -13.61755 -13.40525 -12.98986 -12.96559 -12.60819 -12.43983 -12.25353 -12.06001 -11.75141 -11.58368 -11.39511 -11.00967 -10.93532 -10.74458 -10.42535 -10.33600 -10.25733 -9.90560 -9.85322 -9.61563 -9.02894 -8.94456 -8.70579 -8.20217 -8.08764 -6.77458 -5.82650 -3.21256 -0.01337 0.92662 2.14973 2.45422 2.58596 2.77013 3.36419 3.42395 3.43947 3.46507 3.48856 3.78470 3.99407 4.18678 4.35978 4.47458 4.49534 4.87825 4.92722 5.06510 5.12334 5.14189 5.16632 5.32921 5.34318 5.38791 5.42777 5.55475 5.58215 5.67944 5.83099 5.95776 6.03494 6.05964 6.15319 6.30355 6.34150 6.43618 6.51675 6.68167 6.70561 6.83935 7.14032 7.23204 7.29992 7.55360 7.70058 7.70720 7.79926 8.25467 8.35284 9.16742 9.79517 10.37124 11.27874 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002187 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.467657 B =12798.783738 C =13540.982769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.119 4.119 3 C -0.054 4.054 4 C -0.083 4.083 5 C 0.556 3.444 6 O -0.507 6.507 7 N -0.716 5.716 8 C 0.159 3.841 9 C -0.167 4.167 10 C -0.123 4.123 11 C 0.194 3.806 12 N -0.595 5.595 13 C -0.246 4.246 14 H 0.069 0.931 15 C -0.001 4.001 16 N -0.910 5.910 17 Si 0.904 3.096 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.144 3.856 22 C -0.091 4.091 23 C 0.250 3.750 24 N -0.459 5.459 25 C 0.027 3.973 26 C -0.099 4.099 27 N -0.370 5.370 28 C 0.075 3.925 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.151 0.849 33 H 0.398 0.602 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.254 0.746 40 H 0.023 0.977 41 H 0.057 0.943 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.182 0.818 45 H 0.184 0.816 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -25.819 -3.532 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.122 4.122 3 C -0.078 4.078 4 C -0.089 4.089 5 C 0.341 3.659 6 O -0.382 6.382 7 N -0.369 5.369 8 C 0.037 3.963 9 C -0.167 4.167 10 C -0.144 4.144 11 C 0.069 3.931 12 N -0.319 5.319 13 C -0.375 4.375 14 H 0.086 0.914 15 C -0.199 4.199 16 N -0.555 5.555 17 Si 0.734 3.266 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.205 1.205 21 C 0.018 3.982 22 C -0.130 4.130 23 C 0.003 3.997 24 N -0.177 5.177 25 C -0.124 4.124 26 C -0.229 4.229 27 N -0.042 5.042 28 C -0.047 4.047 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.168 0.832 33 H 0.233 0.767 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.113 0.887 37 H 0.059 0.941 38 H 0.111 0.889 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.199 0.801 45 H 0.201 0.799 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.166 -25.238 -3.401 25.467 hybrid contribution -0.919 0.142 0.107 0.936 sum -1.085 -25.096 -3.295 25.334 Atomic orbital electron populations 1.20735 0.88345 1.03888 1.03330 1.19290 0.97665 0.91159 1.04117 1.21662 0.92050 0.98861 0.95224 1.20245 0.92246 0.90214 1.06216 1.17570 0.87445 0.82750 0.78151 1.90886 1.12710 1.86971 1.47630 1.46055 1.10437 1.05250 1.75143 1.20486 0.93141 0.80492 1.02163 1.20492 1.01895 0.98125 0.96233 1.23304 0.97071 0.97881 0.96147 1.19766 0.93736 0.91372 0.88249 1.44132 1.81108 1.01752 1.04860 1.19177 1.41784 0.81107 0.95417 0.91370 1.24985 0.99470 0.98124 0.97345 1.70007 1.46399 1.34324 1.04790 0.86246 0.78084 0.85224 0.77050 1.21503 1.21554 1.20455 1.20987 0.92928 0.91854 0.92467 1.20797 0.99799 0.98762 0.93607 1.21537 0.86833 0.86202 1.05162 1.70838 1.14001 1.12854 1.20016 1.22714 0.97143 0.90450 1.02055 1.22679 0.89110 0.93053 1.18048 1.42874 1.05951 1.08806 1.46604 1.21444 0.81234 1.00377 1.01696 0.90316 0.90200 0.91016 0.83179 0.76657 0.91410 0.91327 0.88704 0.94085 0.88858 0.93609 0.95905 0.92466 0.91644 0.92893 0.80067 0.79851 0.81866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.41 9.97 36.01 0.36 -0.05 16 2 C -0.12 -0.82 5.82 -105.17 -0.61 -1.43 16 3 C -0.05 -0.48 9.26 -38.76 -0.36 -0.84 16 4 C -0.08 -1.08 6.06 -102.64 -0.62 -1.70 16 5 C 0.56 8.52 7.77 -12.61 -0.10 8.42 16 6 O -0.51 -9.89 16.20 5.25 0.09 -9.80 16 7 N -0.72 -9.55 5.50 -62.62 -0.34 -9.89 16 8 C 0.16 2.41 5.66 -5.19 -0.03 2.38 16 9 C -0.17 -2.78 5.22 -100.99 -0.53 -3.31 16 10 C -0.12 -2.28 9.47 -35.78 -0.34 -2.61 16 11 C 0.19 4.45 5.23 -5.10 -0.03 4.42 16 12 N -0.60 -14.45 3.01 -173.56 -0.52 -14.98 16 13 C -0.25 -6.60 9.71 -15.06 -0.15 -6.75 16 14 H 0.07 1.80 7.88 -52.48 -0.41 1.39 16 15 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 16 N -0.91 -25.75 11.08 55.49 0.61 -25.13 16 17 Si 0.90 21.48 29.58 -169.99 -5.03 16.45 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.14 2.85 6.59 -3.44 -0.02 2.83 16 22 C -0.09 -1.52 5.95 -28.09 -0.17 -1.69 16 23 C 0.25 3.51 7.67 -154.14 -1.18 2.33 16 24 N -0.46 -7.19 10.70 -11.32 -0.12 -7.31 16 25 C 0.03 0.29 11.83 -17.88 -0.21 0.08 16 26 C -0.10 -0.87 11.76 -16.41 -0.19 -1.06 16 27 N -0.37 -3.82 2.94 -61.10 -0.18 -4.00 16 28 C 0.08 0.54 10.48 -16.75 -0.18 0.36 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.28 8.08 -51.93 -0.42 -0.13 16 31 H 0.07 0.17 8.06 -51.93 -0.42 -0.25 16 32 H 0.15 0.99 6.48 -52.48 -0.34 0.65 16 33 H 0.40 4.36 6.56 -40.82 -0.27 4.09 16 34 H 0.07 1.07 7.78 -51.93 -0.40 0.67 16 35 H 0.07 1.07 8.11 -51.93 -0.42 0.65 16 36 H 0.09 1.59 7.73 -52.48 -0.41 1.18 16 37 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 2.41 6.41 -51.93 -0.33 2.08 16 39 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.06 1.11 7.96 -51.93 -0.41 0.69 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.18 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.18 0.82 8.06 -52.49 -0.42 0.40 16 46 H 0.16 0.55 8.04 -52.48 -0.42 0.13 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -35.60 382.00 -10.53 -46.13 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -6.35 Total: 1.52 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -4.44 Total: 1.26 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -0.55 Total: -61.31 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.60 -10.53 -46.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000998720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.721 kcal (2) G-P(sol) polarization free energy of solvation -35.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds