Wall clock time and date at job start Tue Mar 31 2020 23:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39741 * 119.42925 * 2 1 4 4 C 1.38940 * 119.29755 * 180.30514 * 3 2 1 5 5 C 1.47224 * 120.86074 * 179.97438 * 4 3 2 6 6 O 1.21632 * 120.00088 * 179.97438 * 5 4 3 7 7 N 1.34782 * 120.00184 * 359.95662 * 5 4 3 8 8 C 1.46498 * 120.00185 * 180.02562 * 7 5 4 9 9 C 1.50702 * 109.47112 * 180.02562 * 8 7 5 10 10 C 1.29445 * 117.69526 * 95.00093 * 9 8 7 11 11 C 1.50323 * 123.65338 * 180.85870 * 10 9 8 12 12 N 1.47008 * 109.16045 * 349.01973 * 11 10 9 13 13 C 1.36944 * 121.37247 * 222.96394 * 12 11 10 14 14 H 1.08003 * 119.99724 * 155.97611 * 13 12 11 15 15 C 1.38806 * 120.00352 * 335.98306 * 13 12 11 16 16 N 1.31622 * 119.99797 * 344.49716 * 15 13 12 17 17 Si 1.86804 * 120.00026 * 164.49060 * 15 13 12 18 18 H 1.48497 * 109.46688 * 94.45787 * 17 15 13 19 19 H 1.48500 * 109.46802 * 214.45405 * 17 15 13 20 20 H 1.48494 * 109.46981 * 334.45461 * 17 15 13 21 21 C 1.47337 * 117.25262 * 42.95051 * 12 11 10 22 22 C 1.49965 * 117.69068 * 274.73724 * 9 8 7 23 23 C 1.46548 * 118.28042 * 359.92878 * 4 3 2 24 24 N 1.31975 * 132.72443 * 180.02562 * 23 4 3 25 25 C 1.33750 * 109.17285 * 180.02562 * 24 23 4 26 26 C 1.34955 * 108.60304 * 0.02562 * 25 24 23 27 27 N 1.37000 * 107.15034 * 359.97438 * 26 25 24 28 28 C 1.35110 * 119.43272 * 180.27039 * 2 1 3 29 29 H 1.09003 * 109.46774 * 269.72783 * 1 2 3 30 30 H 1.08995 * 109.47312 * 29.72684 * 1 2 3 31 31 H 1.09003 * 109.46698 * 149.73075 * 1 2 3 32 32 H 1.08011 * 120.34823 * 0.25637 * 3 2 1 33 33 H 0.96994 * 119.99786 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.47016 * 300.00005 * 8 7 5 35 35 H 1.09000 * 109.47426 * 59.99468 * 8 7 5 36 36 H 1.08005 * 118.17618 * 0.87668 * 10 9 8 37 37 H 1.09001 * 109.52586 * 108.92192 * 11 10 9 38 38 H 1.09002 * 109.52509 * 229.11760 * 11 10 9 39 39 H 0.97003 * 119.99669 * 180.02562 * 16 15 13 40 40 H 1.08993 * 109.77815 * 57.80752 * 21 12 11 41 41 H 1.09001 * 109.78238 * 178.61570 * 21 12 11 42 42 H 1.09004 * 109.31727 * 281.29137 * 22 9 8 43 43 H 1.08998 * 109.31765 * 40.71562 * 22 9 8 44 44 H 1.07997 * 125.69666 * 179.97438 * 25 24 23 45 45 H 1.07997 * 126.42460 * 179.97438 * 26 25 24 46 46 H 1.08007 * 119.13742 * 359.72711 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2171 0.0000 4 6 3.5830 1.2139 -0.0065 5 6 4.3411 2.4760 -0.0072 6 8 5.5572 2.4549 -0.0124 7 7 3.6875 3.6547 -0.0025 8 6 4.4419 4.9106 -0.0039 9 6 3.4826 6.0728 0.0028 10 6 3.1821 6.5983 1.1470 11 6 2.2273 7.7478 1.3107 12 7 1.9252 8.3161 -0.0110 13 6 1.8800 9.6701 -0.2113 14 1 2.0449 10.0756 -1.1986 15 6 1.6222 10.5212 0.8544 16 7 1.1255 10.0412 1.9748 17 14 1.9804 12.3480 0.6986 18 1 0.7474 13.0599 0.2769 19 1 2.4335 12.8771 2.0101 20 1 3.0451 12.5589 -0.3148 21 6 1.6735 7.3690 -1.1112 22 6 2.9481 6.5428 -1.3172 23 6 4.2744 -0.0782 -0.0114 24 7 5.5516 -0.4104 -0.0174 25 6 5.6588 -1.7436 -0.0205 26 6 4.4184 -2.2752 -0.0170 27 7 3.5314 -1.2311 -0.0110 28 6 2.1709 -1.1767 -0.0056 29 1 -0.3633 -0.0049 1.0277 30 1 -0.3633 0.8924 -0.5096 31 1 -0.3633 -0.8876 -0.5180 32 1 1.6499 2.1504 0.0042 33 1 2.7178 3.6715 0.0017 34 1 5.0734 4.9560 0.8835 35 1 5.0656 4.9588 -0.8965 36 1 3.6433 6.1883 2.0334 37 1 1.3064 7.3933 1.7738 38 1 2.6821 8.5123 1.9406 39 1 0.9451 10.6361 2.7194 40 1 0.8426 6.7136 -0.8507 41 1 1.4396 7.9174 -2.0237 42 1 3.7016 7.1536 -1.8145 43 1 2.7188 5.6792 -1.9415 44 1 6.5835 -2.3014 -0.0259 45 1 4.1713 -3.3265 -0.0187 46 1 1.6077 -2.0983 -0.0054 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000998720.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:30 Heat of formation + Delta-G solvation = 78.345951 kcal Electronic energy + Delta-G solvation = -28414.672383 eV Core-core repulsion = 24498.876036 eV Total energy + Delta-G solvation = -3915.796347 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.71776 -40.83527 -39.32618 -38.64111 -36.41825 -34.86654 -34.36710 -33.11620 -32.44491 -31.40713 -29.98965 -28.51885 -27.57641 -26.31097 -25.14688 -24.34857 -23.36662 -22.68978 -22.50106 -21.63574 -19.54051 -19.13984 -18.52979 -17.74855 -17.32183 -17.05348 -16.97027 -16.80353 -16.14979 -16.01592 -15.73113 -15.38172 -15.22136 -15.05316 -14.86485 -14.55863 -14.44347 -14.27450 -13.96087 -13.63242 -13.51609 -13.25759 -13.20048 -12.91801 -12.81718 -12.78520 -12.57596 -12.42734 -12.22933 -12.10164 -11.80157 -11.69582 -11.31806 -11.19763 -10.92283 -10.67276 -10.17731 -9.68978 -9.66108 -8.92509 -8.73208 -7.87638 -5.28039 -0.74222 0.24637 1.12472 1.46860 1.49348 1.54347 1.58428 1.64701 1.92816 2.33171 2.52009 2.57204 3.08053 3.29882 3.38196 3.55846 3.62788 3.77834 3.81971 3.90673 3.97458 4.27779 4.43213 4.43976 4.46294 4.55405 4.56812 4.65108 4.69673 4.74489 4.79959 4.86027 4.93110 4.93389 5.12038 5.17257 5.23433 5.24729 5.31062 5.42024 5.49663 5.49759 5.61762 5.62968 5.77612 6.03571 6.16477 6.35349 6.49156 6.93947 7.14950 7.16537 7.85271 8.38431 9.20950 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022191 B = 0.002187 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.467657 B =12798.783738 C =13540.982769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.127 4.127 3 C -0.023 4.023 4 C -0.135 4.135 5 C 0.558 3.442 6 O -0.562 6.562 7 N -0.703 5.703 8 C 0.169 3.831 9 C -0.138 4.138 10 C -0.139 4.139 11 C 0.205 3.795 12 N -0.616 5.616 13 C -0.255 4.255 14 H 0.070 0.930 15 C -0.054 4.054 16 N -0.938 5.938 17 Si 0.965 3.035 18 H -0.285 1.285 19 H -0.294 1.294 20 H -0.272 1.272 21 C 0.140 3.860 22 C -0.085 4.085 23 C 0.219 3.781 24 N -0.524 5.524 25 C -0.004 4.004 26 C -0.078 4.078 27 N -0.374 5.374 28 C 0.086 3.914 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.172 0.828 33 H 0.412 0.588 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.111 0.889 37 H 0.019 0.981 38 H 0.056 0.944 39 H 0.249 0.751 40 H 0.034 0.966 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.201 0.799 45 H 0.232 0.768 46 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.746 -28.536 -4.752 29.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.047 4.047 4 C -0.141 4.141 5 C 0.345 3.655 6 O -0.441 6.441 7 N -0.356 5.356 8 C 0.046 3.954 9 C -0.138 4.138 10 C -0.159 4.159 11 C 0.080 3.920 12 N -0.340 5.340 13 C -0.385 4.385 14 H 0.087 0.913 15 C -0.249 4.249 16 N -0.585 5.585 17 Si 0.794 3.206 18 H -0.212 1.212 19 H -0.221 1.221 20 H -0.197 1.197 21 C 0.015 3.985 22 C -0.123 4.123 23 C -0.028 4.028 24 N -0.244 5.244 25 C -0.152 4.152 26 C -0.207 4.207 27 N -0.046 5.046 28 C -0.036 4.036 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.189 0.811 33 H 0.249 0.751 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.129 0.871 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.107 0.893 44 H 0.218 0.782 45 H 0.248 0.752 46 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.213 -27.981 -4.648 28.451 hybrid contribution -0.400 0.835 0.417 1.015 sum -2.614 -27.147 -4.231 27.598 Atomic orbital electron populations 1.20817 0.85579 1.05254 1.04267 1.19709 0.99366 0.90249 1.03680 1.22056 0.90505 1.00938 0.91156 1.20021 0.93520 0.88793 1.11726 1.17975 0.86994 0.83794 0.76708 1.90845 1.15073 1.87742 1.50452 1.45810 1.10936 1.04222 1.74681 1.20248 0.92670 0.80590 1.01885 1.20551 1.00285 0.97406 0.95598 1.22968 0.97900 0.97338 0.97730 1.19408 0.93569 0.91660 0.87337 1.44412 1.81517 1.01805 1.06227 1.19497 1.40812 0.82737 0.95443 0.91273 1.25703 1.00007 1.01874 0.97303 1.70156 1.47760 1.35287 1.05308 0.85288 0.77910 0.80763 0.76675 1.21174 1.22062 1.19744 1.21183 0.94696 0.91555 0.91110 1.20742 0.98093 0.99542 0.93965 1.21685 0.87121 0.87676 1.06362 1.70718 1.15947 1.15418 1.22327 1.23225 0.99368 0.89481 1.03167 1.23380 0.87958 0.94435 1.14939 1.43128 1.07136 1.08026 1.46319 1.22324 0.80032 1.02481 0.98720 0.89460 0.89762 0.88856 0.81063 0.75055 0.92170 0.91397 0.87135 0.96366 0.92589 0.94147 0.94804 0.92252 0.92009 0.89282 0.78224 0.75157 0.77266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.97 71.24 0.71 0.41 16 2 C -0.13 -1.27 5.82 -20.22 -0.12 -1.39 16 3 C -0.02 -0.35 9.26 22.80 0.21 -0.14 16 4 C -0.13 -3.45 6.06 -18.58 -0.11 -3.56 16 5 C 0.56 17.42 7.77 86.60 0.67 18.09 16 6 O -0.56 -23.10 16.20 -4.13 -0.07 -23.16 16 7 N -0.70 -18.14 5.50 -470.28 -2.59 -20.73 16 8 C 0.17 4.99 5.66 85.63 0.48 5.48 16 9 C -0.14 -4.42 5.22 -15.13 -0.08 -4.50 16 10 C -0.14 -5.12 9.47 27.12 0.26 -4.86 16 11 C 0.21 9.69 5.23 85.42 0.45 10.14 16 12 N -0.62 -30.11 3.01 -703.03 -2.11 -32.22 16 13 C -0.25 -13.83 9.71 84.03 0.82 -13.01 16 14 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 15 C -0.05 -3.00 5.01 84.86 0.43 -2.57 16 16 N -0.94 -54.67 11.08 21.65 0.24 -54.43 16 17 Si 0.97 44.82 29.58 68.60 2.03 46.84 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 21 C 0.14 5.35 6.59 86.32 0.57 5.91 16 22 C -0.08 -2.67 5.95 29.71 0.18 -2.49 16 23 C 0.22 6.19 7.67 135.76 1.04 7.23 16 24 N -0.52 -17.17 10.70 -189.73 -2.03 -19.20 16 25 C 0.00 -0.09 11.83 83.65 0.99 0.90 16 26 C -0.08 -1.17 11.76 83.13 0.98 -0.19 16 27 N -0.37 -6.88 2.94 -347.21 -1.02 -7.90 16 28 C 0.09 0.87 10.48 83.30 0.87 1.75 16 29 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.08 0.22 8.08 -2.39 -0.02 0.20 16 31 H 0.09 -0.08 8.06 -2.39 -0.02 -0.10 16 32 H 0.17 1.71 6.48 -2.91 -0.02 1.69 16 33 H 0.41 8.16 6.56 -92.71 -0.61 7.56 16 34 H 0.06 1.91 7.78 -2.38 -0.02 1.89 16 35 H 0.07 2.06 8.11 -2.39 -0.02 2.05 16 36 H 0.11 3.70 7.73 -2.91 -0.02 3.68 16 37 H 0.02 0.93 8.14 -2.39 -0.02 0.92 16 38 H 0.06 3.03 6.41 -2.39 -0.02 3.02 16 39 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 45 H 0.23 0.96 8.06 -2.91 -0.02 0.94 16 46 H 0.21 0.09 8.04 -2.91 -0.02 0.06 16 Total: -1.00 -83.89 382.00 3.19 -80.70 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 0.40 Total: 12.90 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: 8.34 Total: 17.19 kcal Atomic # 7 Polarization: -126.96 SS G_CDS: -7.51 Total: -134.47 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.07 Total: -23.16 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -83.89 3.19 -80.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000998720.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.050 kcal (2) G-P(sol) polarization free energy of solvation -83.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds