Wall clock time and date at job start Tue Mar 31 2020 23:06:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86807 * 119.99860 * 2 1 4 4 H 1.48501 * 109.46920 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46865 * 299.99773 * 3 2 1 6 6 H 1.48501 * 109.47315 * 59.99680 * 3 2 1 7 7 C 1.38802 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00270 * 162.84220 * 7 2 1 9 9 N 1.36934 * 120.00057 * 342.83461 * 7 2 1 10 10 C 1.46848 * 120.38676 * 330.69287 * 9 7 2 11 11 C 1.53351 * 108.81023 * 236.88176 * 10 9 7 12 12 C 1.53178 * 108.77050 * 308.68100 * 11 10 9 13 13 C 1.52847 * 117.65802 * 269.96977 * 12 11 10 14 14 C 1.52816 * 117.71532 * 201.11498 * 12 11 10 15 15 H 1.09007 * 117.50155 * 0.10829 * 14 12 11 16 16 N 1.46499 * 117.50503 * 215.10211 * 14 12 11 17 17 C 1.34783 * 119.99877 * 154.99927 * 16 14 12 18 18 O 1.21644 * 120.00046 * 359.97438 * 17 16 14 19 19 C 1.47066 * 119.99461 * 180.02562 * 17 16 14 20 20 C 1.35910 * 125.42130 * 179.97438 * 19 17 16 21 21 C 1.41427 * 107.67377 * 179.97438 * 20 19 17 22 22 C 1.39844 * 134.34688 * 180.02562 * 21 20 19 23 23 N 1.31559 * 120.03883 * 179.97438 * 22 21 20 24 24 C 1.32363 * 122.32332 * 0.02562 * 23 22 21 25 25 C 1.36633 * 121.64417 * 359.97438 * 24 23 22 26 26 C 1.39436 * 119.01687 * 0.02562 * 25 24 23 27 27 N 1.36872 * 134.33027 * 180.02562 * 26 25 24 28 28 H 0.97004 * 125.58659 * 359.97438 * 27 26 25 29 29 C 1.53180 * 115.07710 * 55.44859 * 12 11 10 30 30 C 1.46851 * 120.38481 * 150.66839 * 9 7 2 31 31 H 0.97001 * 119.99438 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.58214 * 117.08408 * 10 9 7 33 33 H 1.09001 * 109.68879 * 356.74579 * 10 9 7 34 34 H 1.09003 * 109.58164 * 188.89598 * 11 10 9 35 35 H 1.09005 * 109.58815 * 68.47299 * 11 10 9 36 36 H 1.09004 * 117.49830 * 144.81301 * 13 12 11 37 37 H 1.08996 * 117.50161 * 359.77161 * 13 12 11 38 38 H 0.96996 * 119.99558 * 334.99846 * 16 14 12 39 39 H 1.07999 * 126.16372 * 359.72506 * 20 19 17 40 40 H 1.08002 * 119.97823 * 359.97438 * 22 21 20 41 41 H 1.07999 * 119.17311 * 179.97438 * 24 23 22 42 42 H 1.08008 * 120.49362 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.58982 * 64.34537 * 29 12 11 44 44 H 1.09005 * 109.59069 * 184.77258 * 29 12 11 45 45 H 1.08997 * 109.57983 * 242.92404 * 30 9 7 46 46 H 1.09006 * 109.57798 * 3.32356 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0542 -1.2231 -0.2754 9 7 1.3713 -2.3614 0.3510 10 6 0.2479 -2.3338 1.2963 11 6 0.5713 -3.2590 2.4758 12 6 0.9912 -4.6267 1.9287 13 6 -0.1043 -5.6696 1.7087 14 6 0.8851 -5.8298 2.8650 15 1 0.5139 -5.6510 3.8741 16 7 1.9052 -6.8742 2.7428 17 6 2.1876 -7.6668 3.7957 18 8 1.5957 -7.5147 4.8476 19 6 3.2120 -8.7148 3.6732 20 6 3.5836 -9.5723 4.6600 21 6 4.5904 -10.4173 4.1379 22 6 5.3461 -11.4735 4.6566 23 7 6.2338 -12.0820 3.8999 24 6 6.4498 -11.7323 2.6417 25 6 5.7579 -10.7122 2.0523 26 6 4.8014 -10.0242 2.7979 27 7 3.9505 -8.9847 2.5358 28 1 3.8773 -8.5145 1.6905 29 6 2.1561 -4.5985 0.9344 30 6 1.8013 -3.6466 -0.2144 31 1 -0.4849 0.8401 -0.0004 32 1 -0.6574 -2.6802 0.7980 33 1 0.0986 -1.3171 1.6598 34 1 -0.3121 -3.3723 3.1042 35 1 1.3865 -2.8335 3.0611 36 1 0.0038 -6.3412 0.8570 37 1 -1.1269 -5.3855 1.9568 38 1 2.3773 -6.9952 1.9042 39 1 3.1851 -9.6005 5.6633 40 1 5.2009 -11.7898 5.6790 41 1 7.1916 -12.2667 2.0668 42 1 5.9490 -10.4427 1.0240 43 1 3.0568 -4.2454 1.4366 44 1 2.3243 -5.6006 0.5399 45 1 0.9921 -4.0742 -0.8065 46 1 2.6768 -3.4934 -0.8455 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016686551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:14 Heat of formation + Delta-G solvation = 61.684353 kcal Electronic energy + Delta-G solvation = -28441.329105 eV Core-core repulsion = 24524.810257 eV Total energy + Delta-G solvation = -3916.518848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.91626 -41.13192 -39.84823 -38.79124 -37.18980 -34.70148 -33.49124 -33.38927 -31.83252 -31.54598 -30.41288 -29.89788 -26.31827 -25.96502 -24.12862 -23.89985 -23.38075 -22.78733 -22.04999 -21.36308 -20.01016 -19.74034 -18.70025 -18.31551 -17.41129 -16.88143 -16.60388 -16.54064 -16.45098 -15.78007 -15.58453 -15.47028 -15.31185 -15.21977 -15.01297 -14.88333 -14.59203 -14.21707 -14.15245 -13.84827 -13.74324 -13.32355 -13.13481 -12.92507 -12.63972 -12.59347 -12.48811 -12.27092 -12.03628 -11.81681 -11.54372 -11.42823 -11.27308 -11.15826 -10.77079 -10.53901 -10.50326 -9.98583 -9.78030 -9.02501 -8.63506 -7.87831 -5.34582 -0.45145 0.49203 0.89783 1.43965 1.46920 1.56325 1.63693 1.84525 2.08672 2.49790 2.89918 2.93746 3.27380 3.44684 3.54503 3.60164 3.67531 3.75794 3.81331 3.92856 3.93677 4.06774 4.08953 4.22993 4.49215 4.51316 4.56956 4.70453 4.71318 4.80164 4.83286 4.88624 4.90798 4.97089 5.00378 5.05291 5.11634 5.23152 5.27898 5.36099 5.36249 5.44825 5.53433 5.64587 5.76905 5.78691 6.17489 6.34300 6.40216 6.90798 7.10704 7.15305 7.87550 8.37919 9.17196 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019582 B = 0.002161 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.551863 B =12951.467310 C =13716.182443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.962 3.038 4 H -0.267 1.267 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.609 5.609 10 C 0.180 3.820 11 C -0.095 4.095 12 C -0.113 4.113 13 C -0.166 4.166 14 C 0.084 3.916 15 H 0.126 0.874 16 N -0.680 5.680 17 C 0.589 3.411 18 O -0.557 6.557 19 C 0.007 3.993 20 C -0.089 4.089 21 C -0.194 4.194 22 C 0.174 3.826 23 N -0.529 5.529 24 C 0.098 3.902 25 C -0.179 4.179 26 C 0.134 3.866 27 N -0.558 5.558 28 H 0.433 0.567 29 C -0.084 4.084 30 C 0.144 3.856 31 H 0.249 0.751 32 H 0.000 1.000 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.048 0.952 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.409 0.591 39 H 0.167 0.833 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.162 0.838 43 H 0.056 0.944 44 H 0.085 0.915 45 H 0.019 0.981 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.999 -23.649 4.368 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.246 4.246 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.082 0.918 9 N -0.332 5.332 10 C 0.054 3.946 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.204 4.204 14 C -0.021 4.021 15 H 0.144 0.856 16 N -0.329 5.329 17 C 0.376 3.624 18 O -0.435 6.435 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.201 4.201 22 C 0.006 3.994 23 N -0.239 5.239 24 C -0.049 4.049 25 C -0.201 4.201 26 C 0.016 3.984 27 N -0.164 5.164 28 H 0.274 0.726 29 C -0.123 4.123 30 C 0.019 3.981 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.067 0.933 36 H 0.130 0.870 37 H 0.121 0.879 38 H 0.247 0.753 39 H 0.185 0.815 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.179 0.821 43 H 0.075 0.925 44 H 0.103 0.897 45 H 0.037 0.963 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.961 -23.974 5.216 26.120 hybrid contribution -0.400 2.332 -1.261 2.681 sum 8.561 -21.642 3.955 23.608 Atomic orbital electron populations 1.70176 1.06615 1.25726 1.55377 1.25783 0.96003 1.01445 1.01376 0.85286 0.78704 0.80193 0.76739 1.19144 1.21919 1.21846 1.19511 0.92800 0.86199 1.40544 0.91772 1.44240 1.37526 1.02590 1.48830 1.20524 0.88076 0.97560 0.88391 1.21643 1.00035 0.93846 0.97917 1.21813 0.99384 0.90417 0.99851 1.23637 0.95963 1.01095 0.99747 1.21719 0.93228 0.90126 0.97071 0.85642 1.45138 1.39871 1.33299 1.14633 1.17280 0.81246 0.80228 0.83632 1.90843 1.52489 1.71016 1.29132 1.19988 0.99685 1.01624 0.88925 1.21066 0.96829 0.94143 0.99713 1.19370 1.03035 1.02456 0.95207 1.22889 0.87993 0.88462 1.00062 1.67728 1.18758 1.30043 1.07403 1.22624 0.97600 0.93860 0.90789 1.21119 0.97708 0.98890 1.02417 1.18660 0.93897 0.90470 0.95417 1.41755 1.32123 1.29424 1.13082 0.72572 1.21465 0.95712 0.99485 0.95603 1.21007 0.97239 0.86001 0.93851 0.94142 0.98151 0.92906 0.91355 0.93329 0.87039 0.87861 0.75342 0.81544 0.80176 0.79971 0.82057 0.92479 0.89651 0.96329 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 11.21 21.65 0.24 -54.30 16 2 C -0.05 -2.79 4.90 84.86 0.42 -2.37 16 3 Si 0.96 44.39 29.59 68.60 2.03 46.42 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.26 -13.97 9.54 84.03 0.80 -13.17 16 8 H 0.06 3.37 7.89 -2.91 -0.02 3.34 16 9 N -0.61 -29.34 2.94 -698.88 -2.05 -31.39 16 10 C 0.18 8.42 5.39 86.43 0.47 8.89 16 11 C -0.10 -3.44 5.83 30.77 0.18 -3.26 16 12 C -0.11 -3.26 1.94 -52.17 -0.10 -3.36 16 13 C -0.17 -3.97 9.86 30.55 0.30 -3.67 16 14 C 0.08 2.07 6.14 44.94 0.28 2.35 16 15 H 0.13 3.48 7.40 -2.38 -0.02 3.46 16 16 N -0.68 -13.59 5.34 -446.38 -2.38 -15.97 16 17 C 0.59 13.69 7.80 86.56 0.68 14.36 16 18 O -0.56 -17.11 16.41 -4.17 -0.07 -17.18 16 19 C 0.01 0.13 6.97 39.90 0.28 0.41 16 20 C -0.09 -1.67 10.53 22.51 0.24 -1.44 16 21 C -0.19 -3.40 6.21 -21.37 -0.13 -3.53 16 22 C 0.17 2.78 11.29 85.12 0.96 3.74 16 23 N -0.53 -9.19 10.33 -195.62 -2.02 -11.21 16 24 C 0.10 1.29 11.09 84.24 0.93 2.22 16 25 C -0.18 -2.13 10.09 22.18 0.22 -1.90 16 26 C 0.13 2.09 7.32 39.38 0.29 2.38 16 27 N -0.56 -7.65 6.05 -177.04 -1.07 -8.72 16 28 H 0.43 3.39 8.12 -92.71 -0.75 2.64 16 29 C -0.08 -2.35 5.37 30.77 0.17 -2.19 16 30 C 0.14 5.44 6.52 86.43 0.56 6.00 16 31 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 32 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.05 2.85 5.95 -2.39 -0.01 2.84 16 34 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.41 5.82 6.17 -92.71 -0.57 5.25 16 39 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.18 1.92 8.06 -2.91 -0.02 1.90 16 41 H 0.18 1.29 8.06 -2.91 -0.02 1.26 16 42 H 0.16 0.95 8.06 -2.91 -0.02 0.93 16 43 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.09 1.65 6.75 -2.38 -0.02 1.64 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.05 2.03 7.92 -2.38 -0.02 2.01 16 Total: -1.00 -71.77 377.67 0.91 -70.86 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.29 Total: 16.03 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 6.53 Total: 5.46 kcal Atomic # 7 Polarization: -114.31 SS G_CDS: -7.29 Total: -121.59 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.07 Total: -17.18 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -71.77 0.91 -70.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016686551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.541 kcal (2) G-P(sol) polarization free energy of solvation -71.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds