Wall clock time and date at job start Tue Mar 31 2020 22:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00182 * 2 1 4 4 H 1.48502 * 109.47163 * 269.99732 * 3 2 1 5 5 H 1.48495 * 109.47176 * 29.99963 * 3 2 1 6 6 H 1.48500 * 109.47256 * 149.99918 * 3 2 1 7 7 C 1.38809 * 119.99978 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00470 * 197.85142 * 7 2 1 9 9 N 1.36939 * 120.00142 * 17.85092 * 7 2 1 10 10 C 1.46842 * 120.38681 * 208.90987 * 9 7 2 11 11 C 1.53354 * 108.81512 * 236.88145 * 10 9 7 12 12 C 1.53182 * 108.76640 * 308.68628 * 11 10 9 13 13 C 1.52844 * 117.65744 * 269.97015 * 12 11 10 14 14 C 1.52815 * 117.71249 * 201.11481 * 12 11 10 15 15 H 1.09007 * 117.50234 * 215.12933 * 14 12 11 16 16 N 1.46498 * 117.50368 * 0.13865 * 14 12 11 17 17 C 1.34772 * 120.00216 * 205.00219 * 16 14 12 18 18 O 1.21534 * 120.00137 * 359.97438 * 17 16 14 19 19 C 1.48054 * 120.00060 * 180.27512 * 17 16 14 20 20 C 1.39770 * 119.47296 * 179.45012 * 19 17 16 21 21 C 1.38134 * 119.57717 * 179.77577 * 20 19 17 22 22 C 1.39257 * 118.37662 * 0.47645 * 21 20 19 23 23 N 1.37346 * 133.61002 * 179.72741 * 22 21 20 24 24 H 0.96994 * 125.05070 * 0.03881 * 23 22 21 25 25 C 1.36722 * 109.89235 * 180.02562 * 23 22 21 26 26 C 1.34282 * 110.02389 * 0.02562 * 25 23 22 27 27 C 1.41194 * 119.09936 * 359.76753 * 22 21 20 28 28 N 1.32443 * 119.47044 * 359.72354 * 19 17 16 29 29 C 1.53185 * 115.07782 * 55.44364 * 12 11 10 30 30 C 1.46847 * 120.37891 * 28.88993 * 9 7 2 31 31 H 0.97002 * 119.99544 * 0.02562 * 1 2 3 32 32 H 1.09003 * 109.58375 * 117.08400 * 10 9 7 33 33 H 1.09003 * 109.58346 * 356.68565 * 10 9 7 34 34 H 1.09000 * 109.58983 * 188.89561 * 11 10 9 35 35 H 1.09004 * 109.58187 * 68.46471 * 11 10 9 36 36 H 1.09008 * 117.50249 * 144.81691 * 13 12 11 37 37 H 1.08994 * 117.50555 * 359.76426 * 13 12 11 38 38 H 0.97004 * 119.99985 * 24.99651 * 16 14 12 39 39 H 1.08004 * 120.20795 * 0.02562 * 20 19 17 40 40 H 1.08001 * 120.81247 * 180.24396 * 21 20 19 41 41 H 1.08003 * 124.98431 * 180.02562 * 25 23 22 42 42 H 1.08007 * 126.48351 * 179.97438 * 26 25 23 43 43 H 1.09006 * 109.58824 * 64.34168 * 29 12 11 44 44 H 1.08996 * 109.58890 * 184.76778 * 29 12 11 45 45 H 1.09009 * 109.57725 * 242.92248 * 30 9 7 46 46 H 1.09003 * 109.58201 * 3.31743 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0512 -1.2249 0.2862 9 7 1.3750 -2.3594 -0.3646 10 6 1.8050 -3.6490 0.1905 11 6 2.1665 -4.5893 -0.9658 12 6 1.0057 -4.6104 -1.9651 13 6 -0.0887 -5.6574 -1.7593 14 6 0.9057 -5.8048 -2.9131 15 1 0.5381 -5.6172 -3.9220 16 7 1.9273 -6.8483 -2.7966 17 6 2.2155 -7.6304 -3.8556 18 8 1.6276 -7.4703 -4.9072 19 6 3.2436 -8.6891 -3.7361 20 6 3.5255 -9.5014 -4.8380 21 6 4.4876 -10.4867 -4.7302 22 6 5.1416 -10.6427 -3.5107 23 7 6.1182 -11.4979 -3.0620 24 1 6.5374 -12.1926 -3.5934 25 6 6.4116 -11.2242 -1.7550 26 6 5.6539 -10.2056 -1.3172 27 6 4.8039 -9.7907 -2.4366 28 7 3.8775 -8.8547 -2.5851 29 6 0.5853 -3.2383 -2.5010 30 6 0.2555 -2.3249 -1.3143 31 1 -0.4849 0.8401 -0.0004 32 1 0.9942 -4.0838 0.7750 33 1 2.6775 -3.5002 0.8268 34 1 2.3351 -5.5947 -0.5801 35 1 3.0684 -4.2295 -1.4609 36 1 -1.1109 -5.3728 -2.0090 37 1 0.0173 -6.3368 -0.9136 38 1 2.3963 -6.9763 -1.9572 39 1 2.9974 -9.3570 -5.7689 40 1 4.7242 -11.1232 -5.5701 41 1 7.1451 -11.7500 -1.1618 42 1 5.6682 -9.7737 -0.3273 43 1 1.4021 -2.8058 -3.0790 44 1 -0.2952 -3.3474 -3.1341 45 1 -0.6514 -2.6775 -0.8229 46 1 0.1082 -1.3045 -1.6685 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016725953.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:25 Heat of formation + Delta-G solvation = 85.128061 kcal Electronic energy + Delta-G solvation = -28559.901361 eV Core-core repulsion = 24644.399108 eV Total energy + Delta-G solvation = -3915.502253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.94306 -39.98515 -38.62307 -37.51117 -35.41466 -33.47496 -32.80514 -31.54902 -30.44777 -29.90206 -29.78074 -28.17236 -25.06480 -24.27326 -23.32401 -22.38108 -21.96396 -21.25033 -20.80363 -20.27690 -18.65979 -18.22255 -17.81742 -17.12445 -16.41443 -15.92995 -15.51800 -15.11024 -14.92384 -14.65289 -14.59652 -13.97435 -13.89136 -13.54071 -13.43054 -13.35710 -13.16777 -13.03700 -12.96953 -12.72803 -12.52645 -12.14835 -11.55723 -11.51310 -11.24062 -10.89849 -10.75846 -10.69398 -10.38497 -10.30964 -10.24260 -9.89085 -9.72029 -9.60021 -9.53017 -9.25434 -8.84532 -8.56248 -8.39222 -8.31938 -6.57736 -5.73118 -3.16068 0.49884 0.70251 2.19366 2.51876 2.70613 3.09982 3.42036 3.48999 3.49977 3.71716 3.73615 4.22715 4.30286 4.50777 4.54740 4.55139 4.64962 4.90485 5.08698 5.18015 5.23553 5.25546 5.31580 5.44866 5.52122 5.60033 5.67160 5.72087 5.94706 5.96432 6.04350 6.15563 6.17959 6.20960 6.38654 6.46562 6.54573 6.67517 6.70567 6.73994 6.78536 6.89531 6.92439 7.05824 7.43242 7.44281 7.72660 7.73808 7.85488 8.25392 8.52593 9.27900 9.91679 10.48536 11.34527 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017385 B = 0.002321 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.205774 B =12063.447094 C =12974.883564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.590 5.590 10 C 0.151 3.849 11 C -0.098 4.098 12 C -0.095 4.095 13 C -0.181 4.181 14 C 0.065 3.935 15 H 0.133 0.867 16 N -0.674 5.674 17 C 0.576 3.424 18 O -0.540 6.540 19 C 0.075 3.925 20 C -0.096 4.096 21 C -0.094 4.094 22 C 0.064 3.936 23 N -0.590 5.590 24 H 0.420 0.580 25 C 0.066 3.934 26 C -0.181 4.181 27 C 0.090 3.910 28 N -0.417 5.417 29 C -0.105 4.105 30 C 0.173 3.827 31 H 0.253 0.747 32 H 0.019 0.981 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.411 0.589 39 H 0.154 0.846 40 H 0.139 0.861 41 H 0.181 0.819 42 H 0.159 0.841 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.006 -26.196 -6.802 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.312 5.312 10 C 0.024 3.976 11 C -0.137 4.137 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.040 4.040 15 H 0.151 0.849 16 N -0.323 5.323 17 C 0.361 3.639 18 O -0.416 6.416 19 C -0.072 4.072 20 C -0.118 4.118 21 C -0.122 4.122 22 C -0.047 4.047 23 N -0.193 5.193 24 H 0.257 0.743 25 C -0.062 4.062 26 C -0.206 4.206 27 C -0.047 4.047 28 N -0.128 5.128 29 C -0.145 4.145 30 C 0.047 3.953 31 H 0.063 0.937 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.249 0.751 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.198 0.802 42 H 0.177 0.823 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.036 0.964 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.353 -25.468 -6.808 28.322 hybrid contribution 1.078 -0.201 -0.488 1.200 sum 11.431 -25.669 -7.296 29.031 Atomic orbital electron populations 1.70038 1.05253 1.25433 1.53861 1.25039 0.95248 0.98402 1.00987 0.86312 0.79138 0.83776 0.77687 1.21468 1.21835 1.20472 1.19203 0.92830 0.85082 1.40993 0.91805 1.43981 1.37835 1.01490 1.47880 1.20839 0.97349 0.86964 0.92463 1.21631 0.96154 0.98824 0.97128 1.21958 0.97978 0.91159 0.98534 1.23531 0.96075 1.02608 0.99722 1.21964 0.93265 0.91526 0.97246 0.84919 1.45252 1.39137 1.33202 1.14708 1.17734 0.81573 0.80678 0.83897 1.90766 1.52073 1.70487 1.28322 1.20941 0.98191 0.98093 0.90020 1.21748 0.96480 0.93620 0.99980 1.20437 0.96870 0.99942 0.94983 1.19283 0.93974 0.94736 0.96663 1.41621 1.34352 1.31600 1.11771 0.74297 1.21985 1.01084 0.98882 0.84230 1.21662 0.99550 1.00451 0.98972 1.20034 0.96823 0.93909 0.93895 1.66892 1.04946 1.17132 1.23845 1.21881 0.99676 0.93079 0.99843 1.20767 0.88795 0.98664 0.87069 0.93680 0.96300 0.92759 0.93376 0.91769 0.88260 0.88982 0.75126 0.82883 0.84295 0.80194 0.82328 0.92119 0.92997 0.96350 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.37 11.23 55.49 0.62 -25.74 16 2 C 0.00 0.05 4.88 -17.43 -0.09 -0.04 16 3 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.96 9.54 -15.06 -0.14 -7.11 16 8 H 0.06 1.75 7.89 -52.49 -0.41 1.33 16 9 N -0.59 -14.91 2.94 -172.25 -0.51 -15.42 16 10 C 0.15 3.20 6.51 -3.67 -0.02 3.17 16 11 C -0.10 -1.75 5.37 -26.45 -0.14 -1.89 16 12 C -0.09 -1.66 1.94 -154.49 -0.30 -1.96 16 13 C -0.18 -2.80 9.86 -26.80 -0.26 -3.06 16 14 C 0.07 1.04 6.14 -68.01 -0.42 0.62 16 15 H 0.13 2.21 7.40 -51.93 -0.38 1.82 16 16 N -0.67 -10.11 5.33 -54.76 -0.29 -10.40 16 17 C 0.58 8.89 7.81 -12.24 -0.10 8.80 16 18 O -0.54 -9.51 15.86 5.34 0.08 -9.42 16 19 C 0.08 1.01 6.74 -83.00 -0.56 0.45 16 20 C -0.10 -1.03 9.60 -39.05 -0.37 -1.41 16 21 C -0.09 -0.77 10.18 -39.24 -0.40 -1.17 16 22 C 0.06 0.57 7.29 -83.89 -0.61 -0.04 16 23 N -0.59 -3.10 6.05 -10.58 -0.06 -3.16 16 24 H 0.42 0.77 8.96 -40.82 -0.37 0.41 16 25 C 0.07 0.33 11.81 -16.77 -0.20 0.13 16 26 C -0.18 -1.48 11.08 -37.63 -0.42 -1.90 16 27 C 0.09 1.01 7.52 -83.10 -0.62 0.38 16 28 N -0.42 -5.51 9.57 -6.43 -0.06 -5.57 16 29 C -0.11 -2.08 5.83 -26.46 -0.15 -2.23 16 30 C 0.17 4.16 5.40 -3.67 -0.02 4.14 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 1.13 7.92 -51.93 -0.41 0.72 16 34 H 0.05 0.74 6.75 -51.93 -0.35 0.39 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.10 1.48 8.14 -51.92 -0.42 1.06 16 37 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.41 5.85 6.43 -40.82 -0.26 5.58 16 39 H 0.15 1.50 7.61 -52.48 -0.40 1.11 16 40 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.18 0.17 8.06 -52.48 -0.42 -0.25 16 42 H 0.16 1.09 8.06 -52.48 -0.42 0.67 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 0.92 8.10 -51.93 -0.42 0.50 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.09 2.42 5.93 -51.93 -0.31 2.12 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -34.14 377.73 -10.64 -44.79 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.26 Total: 5.44 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.83 Total: -3.11 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.30 Total: -60.29 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.14 -10.64 -44.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016725953.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.914 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds