Wall clock time and date at job start Tue Mar 31 2020 23:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00298 * 2 1 4 4 H 1.48496 * 109.47252 * 274.48696 * 3 2 1 5 5 H 1.48511 * 109.46798 * 34.48317 * 3 2 1 6 6 H 1.48498 * 109.47185 * 154.48183 * 3 2 1 7 7 C 1.38815 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 163.66111 * 7 2 1 9 9 N 1.36940 * 120.00027 * 343.66228 * 7 2 1 10 10 C 1.47152 * 120.71150 * 154.54445 * 9 7 2 11 11 C 1.53891 * 108.03045 * 132.75511 * 10 9 7 12 12 H 1.08999 * 112.58021 * 182.22796 * 11 10 9 13 13 C 1.54131 * 107.71043 * 306.32672 * 11 10 9 14 14 C 1.54275 * 104.88912 * 89.40952 * 13 11 10 15 15 C 1.54541 * 104.85072 * 359.80847 * 14 13 11 16 16 H 1.08999 * 112.18794 * 146.40842 * 15 14 13 17 17 C 1.47981 * 120.64150 * 334.25040 * 9 7 2 18 18 N 1.48308 * 107.20738 * 58.36336 * 11 10 9 19 19 C 1.34772 * 128.07399 * 106.70417 * 18 11 10 20 20 O 1.21286 * 119.99800 * 179.67775 * 19 18 11 21 21 C 1.50694 * 120.00360 * 359.67868 * 19 18 11 22 22 C 1.50705 * 109.47501 * 179.97438 * 21 19 18 23 23 C 1.34453 * 126.51540 * 264.69101 * 22 21 19 24 24 N 1.36677 * 109.96564 * 179.82867 * 23 22 21 25 25 H 0.96998 * 125.04536 * 180.20754 * 24 23 22 26 26 C 1.37544 * 109.89732 * 0.44610 * 24 23 22 27 27 C 1.38871 * 134.46425 * 179.70284 * 26 24 23 28 28 N 1.31742 * 120.27172 * 180.02562 * 27 26 24 29 29 C 1.32297 * 122.57169 * 359.97438 * 28 27 26 30 30 C 1.36638 * 121.32158 * 359.97438 * 29 28 27 31 31 C 1.39833 * 118.70056 * 0.02562 * 30 29 28 32 32 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 33 33 H 1.09000 * 109.75293 * 13.12301 * 10 9 7 34 34 H 1.09001 * 109.79951 * 252.41434 * 10 9 7 35 35 H 1.09003 * 110.50739 * 330.47097 * 13 11 10 36 36 H 1.08998 * 110.27512 * 208.23276 * 13 11 10 37 37 H 1.09001 * 110.36560 * 240.96526 * 14 13 11 38 38 H 1.09000 * 110.45673 * 118.69927 * 14 13 11 39 39 H 1.08997 * 109.69516 * 107.67060 * 17 9 7 40 40 H 1.09000 * 109.93390 * 346.86005 * 17 9 7 41 41 H 1.08997 * 109.47179 * 300.00125 * 21 19 18 42 42 H 1.09003 * 109.47339 * 60.00322 * 21 19 18 43 43 H 1.07998 * 125.01775 * 359.97348 * 23 22 21 44 44 H 1.08001 * 119.86156 * 0.05364 * 27 26 24 45 45 H 1.08005 * 119.34171 * 179.97438 * 29 28 27 46 46 H 1.08005 * 120.65382 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4030 2.1011 -1.3957 5 1 1.4983 2.6234 0.7927 6 1 3.5920 1.4145 0.6031 7 6 2.0103 -1.2022 -0.0005 8 1 3.0575 -1.2210 -0.2637 9 7 1.3670 -2.3643 0.3325 10 6 1.8508 -3.6610 -0.1674 11 6 1.8988 -4.6408 1.0183 12 1 2.2862 -5.6199 0.7366 13 6 2.7353 -3.9853 2.1346 14 6 1.7180 -3.1853 2.9744 15 6 0.3568 -3.4274 2.2838 16 1 -0.4675 -3.4532 2.9964 17 6 0.1744 -2.3419 1.2084 18 7 0.5275 -4.7203 1.5776 19 6 -0.3551 -5.7334 1.4733 20 8 -1.4449 -5.6446 1.9982 21 6 0.0119 -6.9765 0.7046 22 6 -1.1398 -7.9478 0.7404 23 6 -1.3009 -8.9664 1.6031 24 7 -2.4663 -9.6272 1.3327 25 1 -2.7978 -10.3954 1.8235 26 6 -3.0963 -9.0444 0.2579 27 6 -4.2738 -9.2970 -0.4336 28 7 -4.6201 -8.5394 -1.4543 29 6 -3.8840 -7.5206 -1.8672 30 6 -2.7102 -7.1955 -1.2480 31 6 -2.2906 -7.9642 -0.1579 32 1 -0.4849 0.8401 0.0004 33 1 2.8491 -3.5440 -0.5892 34 1 1.1708 -4.0394 -0.9306 35 1 3.4840 -3.3174 1.7087 36 1 3.2142 -4.7499 2.7463 37 1 1.9665 -2.1241 2.9614 38 1 1.6946 -3.5561 3.9992 39 1 -0.7180 -2.5532 0.6193 40 1 0.0803 -1.3653 1.6832 41 1 0.2328 -6.7123 -0.3295 42 1 0.8897 -7.4377 1.1572 43 1 -0.6123 -9.2230 2.3945 44 1 -4.9085 -10.1175 -0.1332 45 1 -4.2177 -6.9340 -2.7105 46 1 -2.1175 -6.3616 -1.5944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017848310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:19 Heat of formation + Delta-G solvation = 76.071772 kcal Electronic energy + Delta-G solvation = -29920.454305 eV Core-core repulsion = 26004.559343 eV Total energy + Delta-G solvation = -3915.894963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.63473 -40.04012 -38.17700 -37.59072 -34.05729 -33.24889 -31.50128 -31.18792 -30.56703 -30.29146 -29.94050 -27.35921 -26.08016 -23.67899 -23.66637 -23.01501 -22.52696 -21.08534 -20.23513 -19.45201 -18.36942 -17.92246 -17.25243 -16.85711 -16.04214 -15.76417 -15.27813 -15.02858 -14.82998 -14.62927 -14.57428 -14.34950 -14.02949 -13.50226 -13.17492 -13.00740 -12.91110 -12.78294 -12.62973 -12.40284 -12.09887 -11.89416 -11.67409 -11.64427 -11.33289 -11.13686 -10.84808 -10.56044 -10.50086 -10.32631 -10.02638 -9.99491 -9.83052 -9.67365 -9.59587 -9.32622 -8.65981 -8.55771 -8.16129 -7.86818 -6.72069 -5.81798 -3.24018 0.95173 1.48198 2.49281 2.90963 3.10475 3.34642 3.42201 3.43381 3.52834 3.95687 4.44447 4.46462 4.57760 4.68984 4.81086 4.91261 5.03705 5.09093 5.18356 5.33172 5.36103 5.38153 5.47019 5.50216 5.55685 5.59622 5.65882 5.79198 5.83646 5.90096 6.10359 6.20337 6.21939 6.33535 6.39476 6.43485 6.46794 6.55007 6.58702 6.65464 6.76778 6.89192 6.96558 7.29216 7.30153 7.56463 7.73213 8.05065 8.17877 8.33881 8.67924 9.12869 9.76837 10.33842 11.26414 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017279 B = 0.003057 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.098486 B = 9156.374348 C =10115.231946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.252 4.252 8 H 0.068 0.932 9 N -0.588 5.588 10 C 0.138 3.862 11 C 0.107 3.893 12 H 0.086 0.914 13 C -0.111 4.111 14 C -0.113 4.113 15 C 0.105 3.895 16 H 0.085 0.915 17 C 0.174 3.826 18 N -0.608 5.608 19 C 0.529 3.471 20 O -0.546 6.546 21 C -0.061 4.061 22 C -0.146 4.146 23 C 0.073 3.927 24 N -0.583 5.583 25 H 0.418 0.582 26 C 0.038 3.962 27 C 0.106 3.894 28 N -0.470 5.470 29 C 0.051 3.949 30 C -0.111 4.111 31 C -0.056 4.056 32 H 0.254 0.746 33 H 0.062 0.938 34 H 0.018 0.982 35 H 0.082 0.918 36 H 0.051 0.949 37 H 0.085 0.915 38 H 0.049 0.951 39 H 0.025 0.975 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.173 0.827 44 H 0.150 0.850 45 H 0.154 0.846 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.109 -19.311 3.491 19.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.312 5.312 10 C 0.011 3.989 11 C 0.001 3.999 12 H 0.104 0.896 13 C -0.149 4.149 14 C -0.151 4.151 15 C 0.002 3.998 16 H 0.103 0.897 17 C 0.048 3.952 18 N -0.342 5.342 19 C 0.317 3.683 20 O -0.424 6.424 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.055 4.055 24 N -0.186 5.186 25 H 0.255 0.745 26 C -0.072 4.072 27 C -0.062 4.062 28 N -0.179 5.179 29 C -0.099 4.099 30 C -0.132 4.132 31 C -0.068 4.068 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.036 0.964 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.190 0.810 44 H 0.168 0.832 45 H 0.172 0.828 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.457 -19.385 3.311 19.671 hybrid contribution 1.074 0.850 0.642 1.512 sum 0.616 -18.535 3.953 18.962 Atomic orbital electron populations 1.70034 1.05220 1.25562 1.53839 1.25018 0.95265 0.98332 1.00961 0.86304 0.79122 0.83855 0.77611 1.21536 1.21604 1.20435 1.19141 0.92329 0.84425 1.42285 0.91443 1.44229 1.32023 1.00853 1.54095 1.21427 0.98175 0.87103 0.92195 1.22922 0.81857 0.98843 0.96237 0.89642 1.22225 0.97907 0.98553 0.96221 1.22316 0.94357 1.01708 0.96733 1.23189 0.97309 0.83682 0.95668 0.89651 1.21395 0.88607 0.95865 0.89293 1.49250 1.15289 1.16680 1.52947 1.20069 0.83873 0.83342 0.80986 1.90683 1.22022 1.81021 1.48675 1.19908 0.96007 0.92168 1.02070 1.19549 0.97435 0.99191 0.99130 1.21655 0.89193 0.94740 0.99934 1.41522 1.19540 1.29644 1.27932 0.74527 1.19347 0.97590 0.97442 0.92815 1.21733 0.92355 0.99575 0.92527 1.67536 1.32309 1.05529 1.12505 1.22038 0.92106 0.95255 1.00477 1.21312 0.97614 0.99442 0.94800 1.19202 0.95158 0.95647 0.96756 0.93545 0.91921 0.96392 0.89943 0.93014 0.89647 0.93245 0.95719 0.89090 0.88304 0.88557 0.80986 0.83233 0.82846 0.84900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.59 11.12 55.49 0.62 -24.97 16 2 C 0.00 0.08 4.96 -17.43 -0.09 -0.01 16 3 Si 0.90 20.92 29.58 -169.99 -5.03 15.89 16 4 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.25 -6.45 9.65 -15.06 -0.15 -6.59 16 8 H 0.07 1.67 7.87 -52.49 -0.41 1.26 16 9 N -0.59 -13.65 2.31 -170.42 -0.39 -14.04 16 10 C 0.14 2.61 6.01 -3.22 -0.02 2.59 16 11 C 0.11 1.63 3.96 -65.88 -0.26 1.37 16 12 H 0.09 1.02 7.42 -51.93 -0.39 0.63 16 13 C -0.11 -1.66 6.16 -25.47 -0.16 -1.81 16 14 C -0.11 -1.90 6.19 -25.25 -0.16 -2.06 16 15 C 0.11 2.04 4.12 -65.66 -0.27 1.77 16 16 H 0.09 1.71 7.93 -51.93 -0.41 1.29 16 17 C 0.17 4.09 4.62 -2.77 -0.01 4.08 16 18 N -0.61 -10.62 2.74 -153.29 -0.42 -11.04 16 19 C 0.53 9.19 7.92 -10.99 -0.09 9.11 16 20 O -0.55 -11.65 16.35 5.55 0.09 -11.56 16 21 C -0.06 -0.78 5.23 -29.04 -0.15 -0.93 16 22 C -0.15 -1.92 4.80 -102.85 -0.49 -2.41 16 23 C 0.07 0.75 11.74 -16.73 -0.20 0.56 16 24 N -0.58 -5.51 6.06 -10.64 -0.06 -5.58 16 25 H 0.42 2.35 8.96 -40.82 -0.37 1.98 16 26 C 0.04 0.47 7.33 -84.01 -0.62 -0.15 16 27 C 0.11 1.28 11.25 -17.36 -0.20 1.09 16 28 N -0.47 -6.57 10.32 -13.40 -0.14 -6.70 16 29 C 0.05 0.69 11.11 -17.93 -0.20 0.49 16 30 C -0.11 -1.61 10.12 -39.56 -0.40 -2.01 16 31 C -0.06 -0.82 6.42 -105.13 -0.67 -1.49 16 32 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 34 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 1.31 7.83 -51.93 -0.41 0.90 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 1.59 7.84 -51.93 -0.41 1.19 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 2.36 6.30 -51.93 -0.33 2.03 16 41 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.10 0.93 8.03 -51.93 -0.42 0.51 16 43 H 0.17 1.17 8.06 -52.49 -0.42 0.74 16 44 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 45 H 0.15 1.74 8.06 -52.48 -0.42 1.32 16 46 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 LS Contribution 372.75 15.07 5.62 5.62 Total: -1.00 -34.11 372.75 -10.33 -44.44 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.49 Total: 4.35 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -4.12 Total: 3.59 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.40 Total: -62.33 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.11 -10.33 -44.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017848310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.513 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds