Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86802 * 120.00102 * 2 1 4 4 H 1.48501 * 109.46657 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46800 * 299.99740 * 3 2 1 6 6 H 1.48497 * 109.47067 * 60.00222 * 3 2 1 7 7 C 1.38814 * 119.99902 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00126 * 190.27204 * 7 2 1 9 9 N 1.36939 * 119.99693 * 10.27403 * 7 2 1 10 10 C 1.46926 * 120.63373 * 32.64267 * 9 7 2 11 11 C 1.53187 * 108.77702 * 126.36788 * 10 9 7 12 12 C 1.53039 * 109.31396 * 54.63366 * 11 10 9 13 13 C 1.53042 * 109.53906 * 298.63402 * 12 11 10 14 14 C 1.46935 * 120.62870 * 212.36066 * 9 7 2 15 15 H 1.08989 * 109.58552 * 113.84360 * 14 9 7 16 16 C 1.52998 * 109.58287 * 353.41799 * 14 9 7 17 17 N 1.46495 * 109.47395 * 60.11528 * 16 14 9 18 18 C 1.34775 * 120.00264 * 179.97438 * 17 16 14 19 19 O 1.21483 * 120.00009 * 359.97438 * 18 17 16 20 20 C 1.48380 * 119.99972 * 179.97438 * 18 17 16 21 21 C 1.40210 * 119.21713 * 179.73034 * 20 18 17 22 22 C 1.36646 * 119.90726 * 179.71897 * 21 20 18 23 23 C 1.40559 * 118.10282 * 0.53899 * 22 21 20 24 24 C 1.40405 * 122.05806 * 179.74859 * 23 22 21 25 25 N 1.31239 * 119.87714 * 179.97438 * 24 23 22 26 26 C 1.32607 * 122.68234 * 359.97438 * 25 24 23 27 27 C 1.36105 * 121.99146 * 0.02562 * 26 25 24 28 28 C 1.40939 * 118.77025 * 359.97438 * 27 26 25 29 29 N 1.31983 * 119.21861 * 0.02562 * 20 18 17 30 30 H 0.97000 * 119.99266 * 359.97438 * 1 2 3 31 31 H 1.08996 * 109.58293 * 246.15513 * 10 9 7 32 32 H 1.09003 * 109.58310 * 6.43453 * 10 9 7 33 33 H 1.08997 * 109.50138 * 174.58818 * 11 10 9 34 34 H 1.09002 * 109.49661 * 294.68475 * 11 10 9 35 35 H 1.09001 * 109.46030 * 58.65440 * 12 11 10 36 36 H 1.09001 * 109.46002 * 178.62923 * 12 11 10 37 37 H 1.09004 * 109.49554 * 181.31474 * 13 12 11 38 38 H 1.08993 * 109.49817 * 301.41279 * 13 12 11 39 39 H 1.09005 * 109.46834 * 180.11171 * 16 14 9 40 40 H 1.08998 * 109.47292 * 300.10971 * 16 14 9 41 41 H 0.97006 * 120.00021 * 359.97438 * 17 16 14 42 42 H 1.08006 * 120.04754 * 359.97438 * 21 20 18 43 43 H 1.07993 * 120.95113 * 180.26575 * 22 21 20 44 44 H 1.08002 * 120.06021 * 359.95348 * 24 23 22 45 45 H 1.07998 * 119.00314 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.61295 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0773 -1.2096 0.1673 9 7 1.3420 -2.3786 -0.2105 10 6 0.1675 -2.4248 -1.0920 11 6 0.3857 -3.5132 -2.1476 12 6 0.7007 -4.8386 -1.4504 13 6 1.9863 -4.6940 -0.6329 14 6 1.7896 -3.6201 0.4356 15 1 1.0362 -3.9526 1.1495 16 6 3.1138 -3.3722 1.1608 17 7 2.9262 -2.3362 2.1794 18 6 3.9641 -1.9512 2.9482 19 8 5.0551 -2.4638 2.7968 20 6 3.7743 -0.9014 3.9794 21 6 4.8639 -0.5175 4.7740 22 6 4.7063 0.4519 5.7240 23 6 3.4333 1.0278 5.8775 24 6 3.1771 2.0262 6.8309 25 7 1.9719 2.5348 6.9372 26 6 0.9606 2.1459 6.1727 27 6 1.1051 1.1853 5.2193 28 6 2.3702 0.5895 5.0430 29 7 2.5823 -0.3553 4.1311 30 1 -0.4849 0.8401 0.0004 31 1 -0.7209 -2.6578 -0.5050 32 1 0.0394 -1.4590 -1.5808 33 1 -0.5171 -3.6237 -2.7483 34 1 1.2196 -3.2336 -2.7914 35 1 -0.1228 -5.1052 -0.7880 36 1 0.8324 -5.6202 -2.1987 37 1 2.2227 -5.6450 -0.1554 38 1 2.8051 -4.4033 -1.2909 39 1 3.4450 -4.2948 1.6377 40 1 3.8654 -3.0442 0.4429 41 1 2.0550 -1.9271 2.3005 42 1 5.8274 -0.9845 4.6325 43 1 5.5350 0.7636 6.3423 44 1 3.9702 2.3747 7.4758 45 1 -0.0071 2.6052 6.3107 46 1 0.2662 0.8858 4.6087 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024677555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = 52.921219 kcal Electronic energy + Delta-G solvation = -29993.263065 eV Core-core repulsion = 26076.364218 eV Total energy + Delta-G solvation = -3916.898846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.25869 -39.41596 -38.04484 -37.37148 -34.36226 -33.65120 -33.07263 -31.81902 -30.67411 -30.41541 -29.90948 -26.57780 -25.49158 -24.57978 -23.95494 -22.71444 -22.15340 -20.97159 -20.33065 -19.16636 -18.62717 -17.92781 -17.26638 -16.48547 -15.82739 -15.66106 -15.42163 -14.97669 -14.82124 -14.32089 -14.28821 -14.10680 -13.93579 -13.72653 -13.40929 -13.24936 -12.99546 -12.85498 -12.63839 -12.40418 -12.25465 -12.04212 -11.75899 -11.23253 -10.96040 -10.81283 -10.77763 -10.57249 -10.29473 -10.15282 -10.07819 -9.99599 -9.83661 -9.55528 -9.43708 -9.32608 -9.26070 -8.61151 -8.57956 -8.26773 -6.63395 -5.84468 -3.32055 0.03631 0.51077 1.78269 2.55681 3.30175 3.39540 3.41655 3.44544 3.54763 4.07271 4.11983 4.23021 4.40634 4.42482 4.58778 4.65927 4.88135 5.18426 5.22638 5.24561 5.32999 5.49498 5.54898 5.60135 5.63828 5.67538 5.69553 5.83022 5.93756 5.97112 6.04272 6.12267 6.25822 6.29944 6.35153 6.39284 6.52947 6.58230 6.70336 6.72911 6.85208 6.95007 7.07559 7.38838 7.62103 7.67170 7.77840 7.78206 8.19393 8.41529 8.70484 9.16787 9.77027 10.35462 11.22421 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012760 B = 0.004065 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.847524 B = 6886.957690 C = 7932.925323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.018 3.982 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.250 4.250 8 H 0.067 0.933 9 N -0.588 5.588 10 C 0.174 3.826 11 C -0.145 4.145 12 C -0.107 4.107 13 C -0.127 4.127 14 C 0.160 3.840 15 H 0.032 0.968 16 C 0.131 3.869 17 N -0.664 5.664 18 C 0.554 3.446 19 O -0.553 6.553 20 C 0.146 3.854 21 C -0.130 4.130 22 C -0.046 4.046 23 C -0.157 4.157 24 C 0.152 3.848 25 N -0.485 5.485 26 C 0.080 3.920 27 C -0.124 4.124 28 C 0.153 3.847 29 N -0.430 5.430 30 H 0.253 0.747 31 H 0.018 0.982 32 H 0.086 0.914 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.427 0.573 42 H 0.154 0.846 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.160 0.840 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.023 -1.683 9.694 10.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.085 0.915 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.184 4.184 12 C -0.145 4.145 13 C -0.167 4.167 14 C 0.053 3.947 15 H 0.050 0.950 16 C 0.007 3.993 17 N -0.314 5.314 18 C 0.337 3.663 19 O -0.432 6.432 20 C -0.010 4.010 21 C -0.151 4.151 22 C -0.074 4.074 23 C -0.162 4.162 24 C -0.022 4.022 25 N -0.193 5.193 26 C -0.064 4.064 27 C -0.144 4.144 28 C 0.025 3.975 29 N -0.141 5.141 30 H 0.063 0.937 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.267 0.733 42 H 0.172 0.828 43 H 0.168 0.832 44 H 0.183 0.817 45 H 0.178 0.822 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 3.531 -1.477 9.628 10.360 hybrid contribution 0.788 0.837 -0.269 1.181 sum 4.319 -0.639 9.359 10.327 Atomic orbital electron populations 1.69978 1.05036 1.25242 1.53653 1.25033 0.95155 0.97818 1.00216 0.86435 0.79661 0.84777 0.77342 1.20386 1.21529 1.21631 1.19147 0.91012 0.83502 1.44267 0.91538 1.44052 1.33043 1.03189 1.50958 1.20771 0.88059 0.96903 0.89429 1.22203 0.99829 0.96827 0.99530 1.21359 0.97375 0.97416 0.98333 1.21869 0.98136 0.98072 0.98627 1.20646 0.92846 0.88785 0.92407 0.95006 1.21421 0.98683 0.89415 0.89807 1.45982 1.13779 1.38477 1.33124 1.17842 0.84944 0.82065 0.81430 1.90722 1.25234 1.56693 1.70594 1.21756 0.89332 0.94912 0.94968 1.21842 1.00681 0.97490 0.95091 1.21379 0.95745 0.93811 0.96460 1.19951 0.95719 1.00534 0.99949 1.23160 0.94391 0.90681 0.93931 1.67454 1.00250 1.26598 1.24976 1.22233 0.97928 0.94521 0.91698 1.21934 0.96743 0.96648 0.99074 1.18941 0.93803 0.93195 0.91545 1.68030 1.22457 1.07327 1.16288 0.93690 0.96390 0.89584 0.93558 0.92865 0.92869 0.93721 0.92975 0.92067 0.92220 0.91178 0.73270 0.82842 0.83222 0.81680 0.82245 0.82960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.28 11.12 55.49 0.62 -23.66 16 2 C 0.02 0.46 5.05 -17.43 -0.09 0.37 16 3 Si 0.89 21.71 29.57 -169.99 -5.03 16.69 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.25 -6.27 6.91 -15.06 -0.10 -6.37 16 8 H 0.07 1.74 5.91 -52.49 -0.31 1.42 16 9 N -0.59 -13.43 2.98 -165.03 -0.49 -13.92 16 10 C 0.17 3.90 5.25 -3.71 -0.02 3.88 16 11 C -0.14 -2.66 6.08 -26.61 -0.16 -2.83 16 12 C -0.11 -1.74 5.89 -26.69 -0.16 -1.89 16 13 C -0.13 -2.10 5.35 -26.83 -0.14 -2.25 16 14 C 0.16 3.08 3.00 -67.82 -0.20 2.88 16 15 H 0.03 0.64 8.14 -51.94 -0.42 0.21 16 16 C 0.13 2.46 4.42 -4.05 -0.02 2.44 16 17 N -0.66 -13.20 3.85 -61.08 -0.24 -13.44 16 18 C 0.55 10.78 7.82 -12.09 -0.09 10.69 16 19 O -0.55 -11.42 16.28 5.38 0.09 -11.33 16 20 C 0.15 2.57 6.75 -82.89 -0.56 2.01 16 21 C -0.13 -1.82 9.54 -39.42 -0.38 -2.19 16 22 C -0.05 -0.52 9.92 -39.28 -0.39 -0.91 16 23 C -0.16 -2.09 5.75 -106.73 -0.61 -2.71 16 24 C 0.15 1.73 11.05 -16.99 -0.19 1.55 16 25 N -0.48 -6.29 10.30 -13.18 -0.14 -6.43 16 26 C 0.08 1.02 11.06 -17.98 -0.20 0.82 16 27 C -0.12 -1.83 10.08 -39.33 -0.40 -2.23 16 28 C 0.15 2.50 6.63 -84.86 -0.56 1.94 16 29 N -0.43 -7.89 9.50 -7.49 -0.07 -7.96 16 30 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 2.19 6.18 -51.93 -0.32 1.87 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.42 7.42 -51.93 -0.39 1.04 16 41 H 0.43 9.18 6.68 -40.82 -0.27 8.91 16 42 H 0.15 1.92 7.60 -52.48 -0.40 1.52 16 43 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 45 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 46 H 0.15 2.23 8.06 -52.49 -0.42 1.81 16 LS Contribution 373.06 15.07 5.62 5.62 Total: -1.00 -30.15 373.06 -10.23 -40.37 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -6.32 Total: 8.86 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -4.27 Total: 5.19 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.32 Total: -65.40 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: 0.09 Total: -11.33 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.15 -10.23 -40.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024677555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.295 kcal (2) G-P(sol) polarization free energy of solvation -30.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds