Wall clock time and date at job start Tue Mar 31 2020 22:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00304 * 2 1 4 4 H 1.48502 * 109.46817 * 240.00224 * 3 2 1 5 5 H 1.48496 * 109.47339 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46960 * 120.00361 * 3 2 1 7 7 C 1.38819 * 119.99363 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99688 * 179.97438 * 7 2 1 9 9 N 1.36930 * 120.00340 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00065 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.58156 * 32.28241 * 10 9 7 12 12 C 1.56007 * 110.52349 * 269.56306 * 10 9 7 13 13 C 1.57075 * 106.03120 * 233.95607 * 12 10 9 14 14 C 1.51554 * 101.47676 * 335.33068 * 13 12 10 15 15 H 1.09000 * 111.11078 * 287.58951 * 14 13 12 16 16 C 1.51516 * 123.36426 * 151.80391 * 14 13 12 17 17 N 1.49621 * 102.49042 * 207.62120 * 16 14 13 18 18 C 1.34777 * 126.07302 * 205.64982 * 17 16 14 19 19 O 1.21553 * 119.99924 * 180.02562 * 18 17 16 20 20 C 1.47948 * 120.00182 * 0.30503 * 18 17 16 21 21 C 1.39790 * 119.31895 * 179.71812 * 20 18 17 22 22 C 1.37019 * 119.45527 * 179.97438 * 21 20 18 23 23 C 1.39777 * 118.23571 * 0.02562 * 22 21 20 24 24 C 1.46148 * 134.24653 * 179.97438 * 23 22 21 25 25 C 1.34437 * 106.92276 * 180.02562 * 24 23 22 26 26 N 1.36729 * 110.00109 * 0.02562 * 25 24 23 27 27 H 0.97001 * 124.99544 * 180.02562 * 26 25 24 28 28 C 1.37554 * 110.00137 * 359.97438 * 26 25 24 29 29 N 1.32174 * 133.20309 * 180.29750 * 28 26 25 30 30 C 1.49284 * 107.85606 * 25.92145 * 17 16 14 31 31 C 1.49649 * 104.71197 * 5.97584 * 30 17 16 32 32 H 1.09000 * 107.62603 * 78.67180 * 31 30 17 33 33 H 0.97002 * 119.99515 * 359.97438 * 1 2 3 34 34 H 0.96999 * 119.99825 * 359.97438 * 9 7 2 35 35 H 1.08996 * 110.19104 * 353.48208 * 12 10 9 36 36 H 1.08991 * 110.19114 * 115.26344 * 12 10 9 37 37 H 1.09000 * 111.31918 * 217.22682 * 13 12 10 38 38 H 1.08998 * 110.91654 * 93.25866 * 13 12 10 39 39 H 1.09003 * 110.80052 * 89.37451 * 16 14 13 40 40 H 1.08997 * 110.96987 * 325.95126 * 16 14 13 41 41 H 1.07995 * 120.27718 * 359.97438 * 21 20 18 42 42 H 1.07998 * 120.88548 * 179.97438 * 22 21 20 43 43 H 1.08001 * 126.53686 * 0.02753 * 24 23 22 44 44 H 1.07997 * 124.99962 * 180.02562 * 25 24 23 45 45 H 1.09003 * 110.39913 * 124.91928 * 30 17 16 46 46 H 1.09001 * 110.39335 * 247.31866 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1039 1.6962 -1.2126 5 1 1.2854 2.7464 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0578 -3.6569 -0.0016 11 1 2.9961 -3.5577 0.5442 12 6 2.3228 -4.1355 -1.4626 13 6 1.7570 -5.5982 -1.5492 14 6 1.8218 -6.0330 -0.0988 15 1 2.8514 -6.2101 0.2123 16 6 0.8845 -7.0580 0.5065 17 7 0.8458 -6.6510 1.9458 18 6 0.5755 -7.4571 2.9915 19 8 0.5733 -7.0075 4.1208 20 6 0.2875 -8.8906 2.7655 21 6 0.0148 -9.7150 3.8609 22 6 -0.2527 -11.0429 3.6548 23 6 -0.2413 -11.5238 2.3424 24 6 -0.4691 -12.8330 1.7340 25 6 -0.3195 -12.6791 0.4069 26 7 -0.0140 -11.3780 0.1184 27 1 0.1394 -11.0270 -0.7728 28 6 0.0426 -10.6398 1.2777 29 7 0.2896 -9.3657 1.5280 30 6 1.1533 -5.1919 2.0172 31 6 1.2194 -4.7471 0.5899 32 1 0.1962 -4.6301 0.2329 33 1 -0.4849 0.8401 0.0004 34 1 0.3554 -2.3880 -0.0016 35 1 1.8081 -3.4858 -2.1705 36 1 3.3931 -4.1420 -1.6681 37 1 2.3874 -6.2306 -2.1744 38 1 0.7286 -5.5970 -1.9103 39 1 1.2900 -8.0642 0.3996 40 1 -0.1071 -6.9923 0.0588 41 1 0.0150 -9.3088 4.8616 42 1 -0.4660 -11.7008 4.4843 43 1 -0.7115 -13.7492 2.2518 44 1 -0.4251 -13.4673 -0.3239 45 1 0.3608 -4.6621 2.5459 46 1 2.1129 -5.0295 2.5080 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026289343.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:05 Heat of formation + Delta-G solvation = 61.901814 kcal Electronic energy + Delta-G solvation = -28978.013439 eV Core-core repulsion = 25061.504021 eV Total energy + Delta-G solvation = -3916.509418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.60074 -41.66872 -40.10235 -38.39402 -36.84202 -35.12751 -34.09490 -32.68692 -31.49097 -31.03740 -30.02444 -29.66210 -27.08104 -25.73561 -24.89807 -24.33164 -23.45344 -21.76429 -21.40640 -20.78107 -20.51943 -19.43209 -19.12922 -18.31146 -17.61214 -17.35336 -16.75713 -16.60213 -16.19558 -15.87078 -15.79544 -15.60395 -15.37785 -14.97950 -14.77575 -14.53348 -14.13176 -14.06211 -13.96063 -13.67105 -13.25981 -13.14375 -13.08806 -13.01045 -12.97047 -12.60109 -12.48763 -12.19997 -12.16845 -11.84432 -11.62837 -11.54230 -11.48872 -11.38309 -11.01933 -10.88995 -10.30619 -9.87581 -9.51554 -9.00808 -8.99768 -7.93282 -5.21551 -0.47030 0.25565 1.46708 1.49839 1.51822 1.55590 1.60583 1.84385 1.90948 2.56692 2.85537 2.94219 3.18430 3.40568 3.59209 3.63243 3.81058 3.88237 3.93241 4.02180 4.11666 4.25036 4.29088 4.37034 4.45431 4.51769 4.57546 4.66852 4.70803 4.73099 4.73738 4.81330 4.88503 4.91623 4.98169 5.03154 5.17577 5.20394 5.23452 5.35557 5.45117 5.48133 5.50591 5.51845 5.62331 5.92477 6.23372 6.28581 6.37860 6.77130 6.99560 7.34387 8.10433 8.33424 9.30074 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022679 B = 0.002383 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.310068 B =11747.387440 C =12618.004229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.078 4.078 3 Si 0.971 3.029 4 H -0.276 1.276 5 H -0.298 1.298 6 H -0.280 1.280 7 C -0.237 4.237 8 H 0.076 0.924 9 N -0.733 5.733 10 C 0.191 3.809 11 H 0.049 0.951 12 C -0.135 4.135 13 C -0.084 4.084 14 C -0.108 4.108 15 H 0.091 0.909 16 C 0.134 3.866 17 N -0.605 5.605 18 C 0.577 3.423 19 O -0.575 6.575 20 C 0.095 3.905 21 C -0.150 4.150 22 C -0.035 4.035 23 C -0.141 4.141 24 C -0.219 4.219 25 C 0.098 3.902 26 N -0.573 5.573 27 H 0.433 0.567 28 C 0.251 3.749 29 N -0.468 5.468 30 C 0.135 3.865 31 C -0.121 4.121 32 H 0.060 0.940 33 H 0.250 0.750 34 H 0.371 0.629 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.146 0.854 42 H 0.172 0.828 43 H 0.178 0.822 44 H 0.228 0.772 45 H 0.053 0.947 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.516 -33.637 -2.068 33.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.270 4.270 3 Si 0.800 3.200 4 H -0.202 1.202 5 H -0.224 1.224 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.094 0.906 9 N -0.373 5.373 10 C 0.082 3.918 11 H 0.067 0.933 12 C -0.176 4.176 13 C -0.122 4.122 14 C -0.128 4.128 15 H 0.109 0.891 16 C 0.014 3.986 17 N -0.337 5.337 18 C 0.366 3.634 19 O -0.455 6.455 20 C -0.051 4.051 21 C -0.173 4.173 22 C -0.061 4.061 23 C -0.149 4.149 24 C -0.243 4.243 25 C -0.029 4.029 26 N -0.181 5.181 27 H 0.273 0.727 28 C 0.015 3.985 29 N -0.184 5.184 30 C 0.013 3.987 31 C -0.141 4.141 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.203 0.797 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.163 0.837 42 H 0.190 0.810 43 H 0.195 0.805 44 H 0.244 0.756 45 H 0.071 0.929 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.833 -32.730 -2.264 32.819 hybrid contribution -0.317 1.521 0.596 1.664 sum 0.516 -31.209 -1.667 31.258 Atomic orbital electron populations 1.69817 1.06620 1.25972 1.59786 1.25548 0.96339 1.01060 1.04053 0.85242 0.77185 0.79369 0.78169 1.20177 1.22409 1.20658 1.19599 0.91418 0.85227 1.40644 0.90579 1.42685 1.05248 1.00904 1.88425 1.20190 0.93666 0.83636 0.94318 0.93277 1.23705 1.00722 0.95853 0.97317 1.21882 1.01837 0.94811 0.93658 1.22631 0.99738 0.93340 0.97052 0.89117 1.22071 0.99399 0.99572 0.77571 1.49742 1.66943 1.08907 1.08109 1.17949 0.76861 0.85301 0.83319 1.90763 1.54999 1.76306 1.23464 1.20368 1.02825 0.92833 0.89045 1.21574 1.01565 0.94408 0.99776 1.20983 0.94589 0.94106 0.96386 1.20587 1.03944 0.96731 0.93658 1.22064 1.12542 0.96183 0.93512 1.22832 0.97203 0.84888 0.97989 1.41762 1.61191 1.07936 1.07199 0.72655 1.18705 1.02292 0.89072 0.88441 1.66418 1.15941 1.13614 1.22422 1.20861 1.00546 0.79986 0.97303 1.21848 1.00894 0.97353 0.94025 0.92125 0.94169 0.79667 0.93206 0.91358 0.88753 0.91342 0.86648 0.91282 0.83665 0.81029 0.80502 0.75566 0.92873 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.97 47.01 29.55 68.60 2.03 49.04 16 4 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 5 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.24 -13.28 9.96 84.04 0.84 -12.44 16 8 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 9 N -0.73 -37.38 5.10 -322.99 -1.65 -39.03 16 10 C 0.19 7.51 3.45 44.98 0.16 7.67 16 11 H 0.05 1.98 8.09 -2.39 -0.02 1.96 16 12 C -0.14 -4.42 6.75 33.07 0.22 -4.19 16 13 C -0.08 -2.02 6.71 31.55 0.21 -1.80 16 14 C -0.11 -2.78 3.10 -10.04 -0.03 -2.81 16 15 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 16 C 0.13 3.43 5.73 85.29 0.49 3.92 16 17 N -0.61 -19.43 3.42 -818.51 -2.80 -22.24 16 18 C 0.58 19.67 7.86 86.82 0.68 20.35 16 19 O -0.58 -23.18 16.65 -3.88 -0.06 -23.25 16 20 C 0.09 2.63 6.72 41.99 0.28 2.92 16 21 C -0.15 -3.50 9.55 22.36 0.21 -3.29 16 22 C -0.03 -0.59 10.17 22.36 0.23 -0.37 16 23 C -0.14 -2.36 6.39 -20.11 -0.13 -2.49 16 24 C -0.22 -1.95 11.08 23.45 0.26 -1.69 16 25 C 0.10 0.49 11.82 83.06 0.98 1.47 16 26 N -0.57 -5.77 6.05 -192.17 -1.16 -6.93 16 27 H 0.43 2.35 8.96 -92.71 -0.83 1.52 16 28 C 0.25 4.75 8.43 134.15 1.13 5.88 16 29 N -0.47 -11.22 6.60 -181.83 -1.20 -12.43 16 30 C 0.13 4.80 6.82 84.77 0.58 5.38 16 31 C -0.12 -4.15 2.20 -11.21 -0.02 -4.17 16 32 H 0.06 2.25 7.76 -2.39 -0.02 2.23 16 33 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.37 20.57 7.66 -92.71 -0.71 19.86 16 35 H 0.05 1.88 7.98 -2.39 -0.02 1.86 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.12 2.66 5.90 -2.39 -0.01 2.65 16 40 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.15 3.37 7.60 -2.91 -0.02 3.35 16 42 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 44 H 0.23 -1.10 8.06 -2.91 -0.02 -1.12 16 45 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -77.96 375.25 1.47 -76.49 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.51 Total: 28.49 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 6.55 Total: 10.22 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -6.53 Total: -140.99 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.06 Total: -23.25 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.03 Total: 49.04 kcal Total: -77.96 1.47 -76.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026289343.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.387 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds