Wall clock time and date at job start Tue Mar 31 2020 23:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00716 * 2 1 4 4 H 1.48494 * 109.47413 * 240.00548 * 3 2 1 5 5 H 1.48508 * 109.46784 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47169 * 119.99881 * 3 2 1 7 7 C 1.38818 * 119.99392 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99847 * 179.97438 * 7 2 1 9 9 N 1.36929 * 120.00195 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99978 * 179.97438 * 9 7 2 11 11 H 1.08996 * 110.47811 * 32.33660 * 10 9 7 12 12 C 1.55054 * 110.53915 * 269.51618 * 10 9 7 13 13 C 1.55053 * 102.11450 * 201.32770 * 12 10 9 14 14 C 1.54324 * 103.93221 * 40.06308 * 13 12 10 15 15 H 1.08996 * 112.36694 * 97.60945 * 14 13 12 16 16 C 1.55748 * 109.23605 * 223.04124 * 14 13 12 17 17 N 1.47213 * 106.44525 * 132.61905 * 16 14 13 18 18 C 1.34782 * 126.69937 * 148.31747 * 17 16 14 19 19 O 1.21613 * 119.99908 * 354.82599 * 18 17 16 20 20 C 1.47380 * 119.99818 * 174.82239 * 18 17 16 21 21 C 1.39259 * 120.83333 * 324.86999 * 20 18 17 22 22 N 1.31911 * 120.96462 * 179.73527 * 21 20 18 23 23 C 1.31916 * 122.71958 * 0.56021 * 22 21 20 24 24 C 1.38692 * 120.79585 * 359.72635 * 23 22 21 25 25 N 1.37756 * 134.30925 * 180.02562 * 24 23 22 26 26 H 0.96995 * 125.55695 * 359.97438 * 25 24 23 27 27 C 1.36557 * 108.88242 * 179.97438 * 25 24 23 28 28 C 1.34644 * 109.66142 * 359.97438 * 27 25 24 29 29 C 1.40982 * 118.83997 * 359.97438 * 24 23 22 30 30 C 1.47213 * 106.59935 * 328.30081 * 17 16 14 31 31 C 1.53780 * 106.37689 * 31.27599 * 30 17 16 32 32 H 1.09001 * 111.70516 * 103.62853 * 31 30 17 33 33 H 0.97003 * 119.99296 * 359.97438 * 1 2 3 34 34 H 0.97002 * 120.00056 * 0.02562 * 9 7 2 35 35 H 1.08998 * 110.90511 * 319.53659 * 12 10 9 36 36 H 1.09010 * 110.90060 * 83.12650 * 12 10 9 37 37 H 1.08997 * 110.53862 * 281.45066 * 13 12 10 38 38 H 1.09005 * 110.65507 * 158.72871 * 13 12 10 39 39 H 1.08996 * 110.39481 * 13.17403 * 16 14 13 40 40 H 1.09004 * 109.68623 * 251.67849 * 16 14 13 41 41 H 1.08001 * 119.51648 * 359.97438 * 21 20 18 42 42 H 1.07997 * 119.60341 * 179.70800 * 23 22 21 43 43 H 1.07994 * 125.16962 * 180.02562 * 27 25 24 44 44 H 1.08001 * 126.09059 * 179.97438 * 28 27 25 45 45 H 1.09001 * 110.06882 * 272.05511 * 30 17 16 46 46 H 1.08996 * 110.12455 * 150.53209 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2854 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0101 -1.2023 -0.0005 8 1 3.0902 -1.2024 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0578 -3.6568 -0.0017 11 1 2.9961 -3.5560 0.5438 12 6 2.3181 -4.1335 -1.4540 13 6 2.5603 -5.6526 -1.2595 14 6 1.5172 -6.0623 -0.1986 15 1 0.6217 -6.4962 -0.6433 16 6 2.1856 -7.0139 0.8375 17 7 1.8046 -6.5141 2.1688 18 6 1.6173 -7.2501 3.2822 19 8 1.6710 -8.4637 3.2251 20 6 1.3476 -6.5841 4.5690 21 6 1.9460 -5.3661 4.8816 22 7 1.7024 -4.7653 6.0304 23 6 0.9000 -5.2744 6.9453 24 6 0.2595 -6.4862 6.7331 25 7 -0.6119 -7.2563 7.4715 26 1 -0.9465 -7.0390 8.3555 27 6 -0.9278 -8.3756 6.7558 28 6 -0.2857 -8.3529 5.5725 29 6 0.4797 -7.1683 5.5191 30 6 1.6687 -5.0533 2.0465 31 6 1.1946 -4.7808 0.6092 32 1 0.1327 -4.5373 0.5743 33 1 -0.4849 0.8401 0.0004 34 1 0.3554 -2.3880 -0.0005 35 1 1.4462 -3.9561 -2.0837 36 1 3.2015 -3.6489 -1.8699 37 1 3.5704 -5.8348 -0.8928 38 1 2.3898 -6.1916 -2.1915 39 1 3.2697 -6.9946 0.7268 40 1 1.8127 -8.0286 0.6981 41 1 2.6163 -4.9049 4.1715 42 1 0.7400 -4.7414 7.8709 43 1 -1.5924 -9.1593 7.0879 44 1 -0.3451 -9.1073 4.8019 45 1 2.6311 -4.5722 2.2205 46 1 0.9318 -4.6843 2.7598 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026302662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:18 Heat of formation + Delta-G solvation = 56.761263 kcal Electronic energy + Delta-G solvation = -29399.833360 eV Core-core repulsion = 25483.101031 eV Total energy + Delta-G solvation = -3916.732329 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.00142 -40.24684 -38.53848 -37.90485 -35.13779 -33.48569 -32.75648 -31.08085 -30.25053 -30.04969 -29.27104 -28.24888 -25.17935 -24.95826 -23.14270 -22.97550 -22.64215 -21.27056 -20.32846 -19.73022 -19.08799 -18.16487 -17.61139 -17.07604 -16.75730 -16.02686 -15.46909 -15.25908 -15.17949 -14.94600 -14.74898 -14.28771 -14.03000 -13.77027 -13.49839 -13.10494 -13.02366 -12.89461 -12.76517 -12.52365 -12.45306 -12.01356 -11.87799 -11.62523 -11.18014 -10.83285 -10.75847 -10.69581 -10.42618 -10.34459 -10.29682 -10.21694 -10.16479 -9.94604 -9.66203 -9.45414 -8.87660 -8.86051 -8.61753 -8.15520 -6.94915 -5.76621 -3.05269 0.38666 1.25589 2.42728 2.67295 2.82610 3.02658 3.44980 3.49804 3.50206 3.78778 4.21296 4.41784 4.49396 4.56802 4.61976 4.71075 4.74688 4.91920 4.96613 5.02637 5.11620 5.33742 5.45072 5.47964 5.53699 5.58039 5.61601 5.68723 5.77672 5.87110 5.94621 5.98768 6.02242 6.09709 6.14763 6.22070 6.25390 6.31542 6.37128 6.44670 6.53883 6.62864 6.68005 6.80364 7.04063 7.07621 7.57299 7.70428 7.83247 8.17578 8.41802 9.53141 10.10289 10.44345 11.45805 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011456 B = 0.003275 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.442087 B = 8548.272285 C =10362.694423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.070 0.930 9 N -0.720 5.720 10 C 0.184 3.816 11 H 0.059 0.941 12 C -0.143 4.143 13 C -0.116 4.116 14 C -0.097 4.097 15 H 0.086 0.914 16 C 0.111 3.889 17 N -0.611 5.611 18 C 0.584 3.416 19 O -0.540 6.540 20 C -0.139 4.139 21 C 0.102 3.898 22 N -0.468 5.468 23 C 0.137 3.863 24 C 0.019 3.981 25 N -0.577 5.577 26 H 0.422 0.578 27 C 0.069 3.931 28 C -0.196 4.196 29 C -0.024 4.024 30 C 0.105 3.895 31 C -0.108 4.108 32 H 0.089 0.911 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.165 0.835 42 H 0.157 0.843 43 H 0.178 0.822 44 H 0.153 0.847 45 H 0.077 0.923 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.695 -17.540 12.090 21.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.371 4.371 8 H 0.088 0.912 9 N -0.360 5.360 10 C 0.073 3.927 11 H 0.077 0.923 12 C -0.184 4.184 13 C -0.154 4.154 14 C -0.117 4.117 15 H 0.105 0.895 16 C -0.011 4.011 17 N -0.344 5.344 18 C 0.373 3.627 19 O -0.418 6.418 20 C -0.144 4.144 21 C -0.049 4.049 22 N -0.176 5.176 23 C -0.030 4.030 24 C -0.091 4.091 25 N -0.180 5.180 26 H 0.260 0.740 27 C -0.062 4.062 28 C -0.221 4.221 29 C -0.036 4.036 30 C -0.017 4.017 31 C -0.128 4.128 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.218 0.782 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.182 0.818 42 H 0.174 0.826 43 H 0.195 0.805 44 H 0.171 0.829 45 H 0.095 0.905 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.173 -17.241 12.386 21.230 hybrid contribution -0.519 0.330 0.187 0.643 sum -0.692 -16.911 12.573 21.084 Atomic orbital electron populations 1.69649 1.05106 1.25762 1.57536 1.24727 0.95472 0.97656 1.02914 0.86300 0.78562 0.83661 0.77861 1.21318 1.21767 1.21204 1.19186 0.90950 0.84093 1.42888 0.91214 1.42431 1.05688 0.99689 1.88150 1.21245 0.93714 0.85081 0.92656 0.92325 1.23297 1.01442 0.92900 1.00715 1.22464 0.97700 0.97715 0.97534 1.22911 0.98679 0.94918 0.95202 0.89533 1.22558 0.99176 0.98585 0.80816 1.48510 1.67799 1.08896 1.09146 1.17544 0.76628 0.86093 0.82402 1.90760 1.52073 1.13158 1.85797 1.20262 1.01720 0.97134 0.95318 1.22918 0.97698 0.90330 0.93987 1.67653 1.14894 1.32923 1.02091 1.21970 0.92362 0.89958 0.98669 1.19328 0.99074 0.96873 0.93823 1.41747 1.39794 1.18494 1.17969 0.74030 1.22141 1.00944 0.90516 0.92579 1.20751 1.02616 0.99529 0.99227 1.18122 0.97407 0.95510 0.92536 1.22491 1.01663 0.79126 0.98427 1.22923 1.01564 0.95631 0.92704 0.89308 0.93485 0.78202 0.91576 0.92112 0.91625 0.92179 0.91032 0.90635 0.81811 0.82556 0.80466 0.82907 0.90523 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.60 13.06 55.49 0.72 -26.88 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 8 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 9 N -0.72 -17.07 5.21 -51.71 -0.27 -17.34 16 10 C 0.18 3.37 3.03 -66.15 -0.20 3.17 16 11 H 0.06 1.09 7.14 -51.93 -0.37 0.72 16 12 C -0.14 -2.35 6.60 -24.56 -0.16 -2.51 16 13 C -0.12 -1.48 6.37 -24.95 -0.16 -1.64 16 14 C -0.10 -1.28 4.01 -87.47 -0.35 -1.63 16 15 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 16 C 0.11 1.45 6.62 -2.19 -0.01 1.43 16 17 N -0.61 -8.84 3.32 -171.62 -0.57 -9.41 16 18 C 0.58 9.25 7.54 -12.54 -0.09 9.15 16 19 O -0.54 -9.72 16.45 5.27 0.09 -9.63 16 20 C -0.14 -2.05 5.47 -104.63 -0.57 -2.62 16 21 C 0.10 1.45 9.21 -17.14 -0.16 1.30 16 22 N -0.47 -6.53 10.30 -12.85 -0.13 -6.66 16 23 C 0.14 1.54 11.21 -17.35 -0.19 1.34 16 24 C 0.02 0.21 7.31 -84.00 -0.61 -0.41 16 25 N -0.58 -4.26 6.13 -10.64 -0.07 -4.33 16 26 H 0.42 1.52 8.96 -40.82 -0.37 1.16 16 27 C 0.07 0.52 11.83 -16.72 -0.20 0.33 16 28 C -0.20 -2.27 10.32 -39.75 -0.41 -2.68 16 29 C -0.02 -0.33 6.00 -106.59 -0.64 -0.97 16 30 C 0.11 1.54 4.78 -3.25 -0.02 1.53 16 31 C -0.11 -1.68 3.55 -88.53 -0.31 -1.99 16 32 H 0.09 1.49 7.81 -51.93 -0.41 1.09 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.38 9.79 7.62 -40.82 -0.31 9.47 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.03 8.14 -51.92 -0.42 0.60 16 37 H 0.07 0.78 7.22 -51.93 -0.37 0.41 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.87 7.20 -51.93 -0.37 0.49 16 40 H 0.08 0.99 7.88 -51.93 -0.41 0.58 16 41 H 0.16 2.20 5.92 -52.49 -0.31 1.89 16 42 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 43 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 44 H 0.15 1.83 7.81 -52.49 -0.41 1.42 16 45 H 0.08 1.10 6.39 -51.93 -0.33 0.77 16 46 H 0.08 1.20 6.78 -51.93 -0.35 0.84 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -33.89 370.20 -10.11 -44.00 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.10 Total: 10.80 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -4.34 Total: -3.18 kcal Atomic # 7 Polarization: -64.30 SS G_CDS: -0.31 Total: -64.61 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.09 Total: -9.63 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.89 -10.11 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026302662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.765 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds