Wall clock time and date at job start Tue Mar 31 2020 22:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48497 * 109.47162 * 270.00065 * 3 2 1 5 5 H 1.48498 * 109.47451 * 30.00534 * 3 2 1 6 6 H 1.48507 * 109.46680 * 150.00156 * 3 2 1 7 7 C 1.38814 * 119.99790 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99377 * 180.02562 * 7 2 1 9 9 N 1.36928 * 120.00076 * 359.97438 * 7 2 1 10 10 C 1.46508 * 119.99800 * 179.97438 * 9 7 2 11 11 H 1.08994 * 109.89026 * 33.93525 * 10 9 7 12 12 C 1.53705 * 110.05288 * 272.77067 * 10 9 7 13 13 C 1.56554 * 106.91786 * 241.78454 * 12 10 9 14 14 C 1.54486 * 103.65234 * 336.72045 * 13 12 10 15 15 H 1.08999 * 113.37749 * 272.19573 * 14 13 12 16 16 C 1.54115 * 108.73055 * 145.09357 * 14 13 12 17 17 N 1.47067 * 107.53074 * 271.54349 * 16 14 13 18 18 C 1.34770 * 125.71017 * 181.97026 * 17 16 14 19 19 O 1.21635 * 120.00192 * 184.75587 * 18 17 16 20 20 C 1.47309 * 120.00045 * 4.75343 * 18 17 16 21 21 C 1.46606 * 120.61404 * 352.21375 * 20 18 17 22 22 C 1.34230 * 119.81370 * 179.97438 * 21 20 18 23 23 N 1.37390 * 120.95582 * 0.02921 * 22 21 20 24 24 C 1.34891 * 132.31259 * 179.97438 * 23 22 21 25 25 N 1.30991 * 109.50538 * 180.02562 * 24 23 22 26 26 C 1.33127 * 109.93405 * 359.97438 * 25 24 23 27 27 C 1.38191 * 120.82445 * 359.66544 * 23 22 21 28 28 C 1.38584 * 120.61842 * 172.19762 * 20 18 17 29 29 C 1.47399 * 108.58312 * 2.23794 * 17 16 14 30 30 C 1.53794 * 109.90007 * 155.00421 * 10 9 7 31 31 H 1.09008 * 113.27821 * 264.82823 * 30 10 9 32 32 H 0.97006 * 120.00207 * 359.97438 * 1 2 3 33 33 H 0.97002 * 120.00181 * 0.02562 * 9 7 2 34 34 H 1.09004 * 110.01545 * 1.04519 * 12 10 9 35 35 H 1.08994 * 110.01387 * 122.38336 * 12 10 9 36 36 H 1.09002 * 110.58510 * 218.44243 * 13 12 10 37 37 H 1.09002 * 111.28675 * 95.34211 * 13 12 10 38 38 H 1.09000 * 109.83699 * 152.05020 * 16 14 13 39 39 H 1.08995 * 109.92298 * 31.09080 * 16 14 13 40 40 H 1.08001 * 120.09621 * 0.02562 * 21 20 18 41 41 H 1.07996 * 119.52537 * 179.97438 * 22 21 20 42 42 H 1.07999 * 125.24666 * 0.02562 * 24 23 22 43 43 H 1.08001 * 126.30951 * 179.97438 * 26 25 24 44 44 H 1.07998 * 120.48890 * 0.02562 * 28 20 18 45 45 H 1.08996 * 110.32729 * 93.72131 * 29 17 16 46 46 H 1.09003 * 110.32656 * 215.94810 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3255 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0017 11 1 2.9804 -3.5530 0.5698 12 6 2.3809 -4.0777 -1.4443 13 6 1.6576 -5.4436 -1.6931 14 6 1.4734 -6.0227 -0.2727 15 1 2.3255 -6.6104 0.0686 16 6 0.1392 -6.7925 -0.2213 17 7 -0.9118 -5.8330 0.1494 18 6 -2.2142 -6.1257 0.3352 19 8 -3.0123 -5.2348 0.5564 20 6 -2.6712 -7.5246 0.2704 21 6 -1.7596 -8.5886 -0.1610 22 6 -2.1928 -9.8580 -0.2136 23 7 -3.4834 -10.1791 0.1313 24 6 -4.1499 -11.3515 0.1630 25 7 -5.3792 -11.1449 0.5655 26 6 -5.5650 -9.8496 0.8105 27 6 -4.3685 -9.2034 0.5485 28 6 -3.9707 -7.8594 0.6165 29 6 -0.3038 -4.4963 0.2773 30 6 1.1853 -4.7658 0.6096 31 1 1.3729 -4.9257 1.6714 32 1 -0.4851 0.8401 0.0004 33 1 0.3555 -2.3880 -0.0005 34 1 2.0089 -3.3288 -2.1436 35 1 3.4573 -4.1988 -1.5655 36 1 2.2825 -6.1043 -2.2940 37 1 0.6892 -5.2972 -2.1716 38 1 0.1976 -7.5842 0.5256 39 1 -0.0797 -7.2218 -1.1989 40 1 -0.7420 -8.3520 -0.4349 41 1 -1.5174 -10.6381 -0.5325 42 1 -3.7340 -12.3122 -0.1024 43 1 -6.4791 -9.3885 1.1541 44 1 -4.6656 -7.0977 0.9380 45 1 -0.3918 -3.9489 -0.6611 46 1 -0.7775 -3.9408 1.0868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026305335.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:04 Heat of formation + Delta-G solvation = 102.339103 kcal Electronic energy + Delta-G solvation = -29251.128398 eV Core-core repulsion = 25336.372472 eV Total energy + Delta-G solvation = -3914.755926 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.03029 -40.66306 -38.67866 -37.07745 -35.28754 -33.58318 -33.30530 -31.44199 -30.98857 -29.38789 -28.63790 -28.34304 -25.90266 -24.63941 -23.76947 -23.33454 -22.58852 -22.15776 -19.90592 -19.71144 -18.96426 -18.23688 -18.04655 -17.29370 -16.26867 -16.06717 -16.03851 -15.50663 -15.14003 -14.94320 -14.75755 -14.65327 -14.08634 -13.99644 -13.72833 -13.58721 -13.14527 -12.94135 -12.61673 -12.51357 -12.21778 -12.10543 -11.89473 -11.63567 -11.30855 -10.93225 -10.83789 -10.71915 -10.67511 -10.60468 -10.49854 -10.29780 -10.20538 -9.97263 -9.81111 -9.64244 -9.62178 -8.93416 -8.59858 -7.85577 -6.99492 -5.77979 -3.08232 0.24416 0.78442 2.25740 2.51020 2.75372 2.92902 3.39782 3.42253 3.47295 3.49568 4.00799 4.16650 4.27013 4.28296 4.41136 4.53618 4.61152 4.63023 4.68112 4.83268 5.10629 5.14085 5.25913 5.27034 5.29584 5.37297 5.45244 5.57176 5.59128 5.69736 5.72998 5.75964 5.87150 5.90671 5.97059 6.10236 6.15996 6.19395 6.28570 6.39863 6.43613 6.46196 6.60193 6.73617 6.79311 7.04272 7.50024 7.53204 7.68836 8.14988 8.39934 9.50875 10.07276 10.40453 11.44096 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022941 B = 0.002468 C = 0.002266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.255279 B =11342.371379 C =12355.102151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.070 0.930 9 N -0.725 5.725 10 C 0.183 3.817 11 H 0.055 0.945 12 C -0.144 4.144 13 C -0.117 4.117 14 C -0.105 4.105 15 H 0.102 0.898 16 C 0.095 3.905 17 N -0.608 5.608 18 C 0.574 3.426 19 O -0.529 6.529 20 C -0.143 4.143 21 C -0.140 4.140 22 C 0.036 3.964 23 N -0.365 5.365 24 C 0.149 3.851 25 N -0.461 5.461 26 C 0.006 3.994 27 C -0.017 4.017 28 C 0.007 3.993 29 C 0.117 3.883 30 C -0.104 4.104 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.386 0.614 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.183 0.817 41 H 0.169 0.831 42 H 0.212 0.788 43 H 0.185 0.815 44 H 0.161 0.839 45 H 0.085 0.915 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -24.400 -1.207 24.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.375 4.375 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.072 3.928 11 H 0.073 0.927 12 C -0.184 4.184 13 C -0.155 4.155 14 C -0.125 4.125 15 H 0.120 0.880 16 C -0.028 4.028 17 N -0.341 5.341 18 C 0.363 3.637 19 O -0.407 6.407 20 C -0.149 4.149 21 C -0.160 4.160 22 C -0.082 4.082 23 N -0.037 5.037 24 C -0.127 4.127 25 N -0.174 5.174 26 C -0.151 4.151 27 C -0.125 4.125 28 C -0.014 4.014 29 C -0.004 4.004 30 C -0.124 4.124 31 H 0.108 0.892 32 H 0.066 0.934 33 H 0.223 0.777 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.200 0.800 41 H 0.186 0.814 42 H 0.228 0.772 43 H 0.202 0.798 44 H 0.178 0.822 45 H 0.103 0.897 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.038 -24.503 -1.020 24.609 hybrid contribution 0.864 1.427 -0.221 1.683 sum -1.174 -23.076 -1.240 23.139 Atomic orbital electron populations 1.69659 1.05073 1.25809 1.57211 1.24760 0.95485 0.97716 1.02829 0.86216 0.78639 0.83977 0.77476 1.21759 1.21792 1.20792 1.19224 0.90981 0.84103 1.43174 0.91161 1.42697 1.05932 0.99652 1.88514 1.20623 0.93972 0.85571 0.92625 0.92733 1.23376 0.98800 0.95551 1.00716 1.22762 1.00687 0.97405 0.94635 1.23131 0.95500 0.96371 0.97451 0.88023 1.22548 0.88256 0.92545 0.99458 1.48395 1.06463 1.10975 1.68246 1.17460 0.81007 0.87560 0.77639 1.90864 1.52549 1.48029 1.49273 1.20968 0.94407 0.93405 1.06111 1.23326 1.02412 0.90510 0.99714 1.21571 0.84092 0.98442 1.04115 1.42995 1.09649 1.09163 1.41866 1.24956 0.88821 0.90111 1.08771 1.69985 1.15017 1.17632 1.14812 1.22801 0.96803 0.89051 1.06406 1.19606 0.92612 0.89900 1.10375 1.20989 0.95048 0.92687 0.92715 1.22355 0.92023 0.82747 1.03280 1.23352 0.94564 0.95148 0.99302 0.89168 0.93383 0.77741 0.90782 0.92920 0.92159 0.91696 0.90896 0.90707 0.80020 0.81391 0.77170 0.79766 0.82167 0.89741 0.89851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 4 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.24 -6.53 9.95 -15.06 -0.15 -6.68 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -17.17 4.81 -52.67 -0.25 -17.42 16 10 C 0.18 3.28 3.23 -67.15 -0.22 3.07 16 11 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 12 C -0.14 -2.26 6.62 -24.45 -0.16 -2.42 16 13 C -0.12 -1.40 5.77 -24.04 -0.14 -1.54 16 14 C -0.11 -1.12 4.07 -87.52 -0.36 -1.47 16 15 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 16 C 0.09 0.91 4.14 -3.15 -0.01 0.90 16 17 N -0.61 -8.49 3.32 -172.11 -0.57 -9.06 16 18 C 0.57 8.82 7.80 -12.57 -0.10 8.72 16 19 O -0.53 -10.33 16.69 5.25 0.09 -10.24 16 20 C -0.14 -1.71 6.04 -102.71 -0.62 -2.33 16 21 C -0.14 -1.17 8.62 -37.62 -0.32 -1.50 16 22 C 0.04 0.25 10.92 -16.47 -0.18 0.07 16 23 N -0.37 -3.37 2.94 -62.50 -0.18 -3.56 16 24 C 0.15 1.28 12.70 -90.10 -1.14 0.14 16 25 N -0.46 -5.09 11.18 -13.90 -0.16 -5.24 16 26 C 0.01 0.06 12.03 -16.90 -0.20 -0.14 16 27 C -0.02 -0.18 6.77 -84.12 -0.57 -0.75 16 28 C 0.01 0.08 9.70 -38.67 -0.38 -0.30 16 29 C 0.12 1.98 4.42 -2.53 -0.01 1.97 16 30 C -0.10 -1.52 4.08 -87.45 -0.36 -1.87 16 31 H 0.09 1.27 8.14 -51.92 -0.42 0.85 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.39 9.80 5.36 -40.82 -0.22 9.58 16 34 H 0.07 1.39 7.91 -51.93 -0.41 0.98 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.85 7.40 -51.93 -0.38 0.47 16 38 H 0.07 0.55 6.58 -51.93 -0.34 0.20 16 39 H 0.08 0.59 6.46 -51.93 -0.34 0.26 16 40 H 0.18 1.14 3.03 -52.72 -0.16 0.98 16 41 H 0.17 0.50 8.06 -52.49 -0.42 0.08 16 42 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.19 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.16 1.78 7.70 -52.49 -0.40 1.38 16 45 H 0.08 1.63 6.45 -51.93 -0.34 1.29 16 46 H 0.08 1.63 8.04 -51.93 -0.42 1.22 16 LS Contribution 365.15 15.07 5.50 5.50 Total: -1.00 -34.74 365.15 -10.82 -45.57 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.93 Total: 9.11 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -5.02 Total: -4.56 kcal Atomic # 7 Polarization: -62.03 SS G_CDS: -0.44 Total: -62.47 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.74 -10.82 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026305335.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.905 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds