Wall clock time and date at job start Tue Mar 31 2020 22:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86793 * 120.00369 * 2 1 4 4 H 1.48495 * 109.47444 * 270.00100 * 3 2 1 5 5 H 1.48505 * 109.46953 * 30.00163 * 3 2 1 6 6 H 1.48503 * 109.47094 * 149.99968 * 3 2 1 7 7 C 1.38817 * 119.99601 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36940 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.46491 * 120.00019 * 179.97438 * 9 7 2 11 11 H 1.08999 * 110.06435 * 324.57353 * 10 9 7 12 12 C 1.54733 * 111.52950 * 203.74628 * 10 9 7 13 13 C 1.54116 * 106.76060 * 242.34176 * 12 10 9 14 14 C 1.54452 * 104.73125 * 335.69103 * 13 12 10 15 15 H 1.08990 * 113.74246 * 272.41065 * 14 13 12 16 16 C 1.54895 * 109.70501 * 143.79820 * 14 13 12 17 17 N 1.47354 * 105.01229 * 288.54128 * 16 14 13 18 18 C 1.34777 * 125.70042 * 155.08365 * 17 16 14 19 19 O 1.21527 * 120.00162 * 179.69174 * 18 17 16 20 20 C 1.48062 * 120.00179 * 359.97419 * 18 17 16 21 21 C 1.39760 * 119.47221 * 179.44426 * 20 18 17 22 22 C 1.38140 * 119.57445 * 179.76426 * 21 20 18 23 23 C 1.39254 * 118.37615 * 0.50415 * 22 21 20 24 24 N 1.37351 * 133.61311 * 179.74641 * 23 22 21 25 25 H 0.96997 * 125.05037 * 0.02562 * 24 23 22 26 26 C 1.36713 * 109.89661 * 179.97438 * 24 23 22 27 27 C 1.34293 * 110.02353 * 0.02562 * 26 24 23 28 28 C 1.41191 * 119.09839 * 359.74559 * 23 22 21 29 29 N 1.32445 * 119.46658 * 359.72126 * 20 18 17 30 30 C 1.47029 * 108.59923 * 334.82907 * 17 16 14 31 31 C 1.53913 * 109.91396 * 85.77091 * 10 9 7 32 32 H 1.09000 * 112.92035 * 265.08412 * 31 10 9 33 33 H 0.96997 * 120.00126 * 0.02562 * 1 2 3 34 34 H 0.97005 * 119.99509 * 359.97438 * 9 7 2 35 35 H 1.08995 * 110.72302 * 122.59664 * 12 10 9 36 36 H 1.08997 * 109.25870 * 1.28259 * 12 10 9 37 37 H 1.09000 * 110.38270 * 216.87552 * 13 12 10 38 38 H 1.09004 * 110.47867 * 94.55275 * 13 12 10 39 39 H 1.09005 * 110.44656 * 169.62872 * 16 14 13 40 40 H 1.09002 * 110.28873 * 47.37944 * 16 14 13 41 41 H 1.07998 * 120.21904 * 0.02562 * 21 20 18 42 42 H 1.08000 * 120.81293 * 180.24857 * 22 21 20 43 43 H 1.08006 * 124.98946 * 180.02562 * 26 24 23 44 44 H 1.07996 * 126.48390 * 179.97438 * 27 26 24 45 45 H 1.08990 * 109.83313 * 122.04418 * 30 17 16 46 46 H 1.09004 * 109.82721 * 242.92743 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3255 -2.3881 -0.0016 10 6 2.0579 -3.6568 -0.0027 11 1 2.9674 -3.5630 -0.5961 12 6 1.2008 -4.8068 -0.5834 13 6 1.0166 -5.8382 0.5469 14 6 2.2196 -5.6085 1.4880 15 1 3.1078 -6.1763 1.2114 16 6 1.7797 -5.8176 2.9584 17 7 0.9306 -4.6548 3.2718 18 6 -0.0324 -4.6153 4.2139 19 8 -0.6692 -3.5953 4.3895 20 6 -0.3103 -5.8128 5.0393 21 6 -1.3034 -5.7559 6.0210 22 6 -1.5678 -6.8734 6.7889 23 6 -0.8191 -8.0252 6.5610 24 7 -0.8119 -9.2775 7.1251 25 1 -1.3948 -9.5681 7.8439 26 6 0.1383 -10.0539 6.5223 27 6 0.7685 -9.3508 5.5673 28 6 0.1729 -8.0118 5.5564 29 7 0.3901 -6.9189 4.8390 30 6 1.3135 -3.5430 2.3893 31 6 2.4124 -4.0588 1.4401 32 1 3.4127 -3.7419 1.7354 33 1 -0.4850 0.8400 -0.0004 34 1 0.3554 -2.3880 -0.0016 35 1 1.7019 -5.2701 -1.4332 36 1 0.2320 -4.4132 -0.8908 37 1 1.0377 -6.8508 0.1439 38 1 0.0807 -5.6605 1.0766 39 1 2.6485 -5.8400 3.6163 40 1 1.2078 -6.7406 3.0542 41 1 -1.8635 -4.8455 6.1755 42 1 -2.3335 -6.8529 7.5503 43 1 0.3508 -11.0818 6.7766 44 1 1.5639 -9.7050 4.9285 45 1 0.4496 -3.2153 1.8112 46 1 1.6965 -2.7138 2.9842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026311821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:38 Heat of formation + Delta-G solvation = 47.152768 kcal Electronic energy + Delta-G solvation = -29658.442313 eV Core-core repulsion = 25741.293329 eV Total energy + Delta-G solvation = -3917.148985 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.59606 -41.54499 -39.90095 -38.37388 -36.59690 -34.95605 -33.87678 -32.65025 -31.58145 -30.47379 -30.07457 -29.76984 -27.00189 -26.00586 -25.01074 -24.22463 -23.47899 -21.85462 -21.03280 -20.62776 -20.15781 -19.33539 -19.27800 -18.25493 -17.77036 -17.23118 -16.78745 -16.61912 -16.29884 -15.77950 -15.66858 -15.51223 -14.98452 -14.88081 -14.64025 -14.39401 -14.20875 -13.97969 -13.96982 -13.74527 -13.60175 -13.34861 -13.22261 -13.05618 -12.88005 -12.45408 -12.31875 -12.09077 -11.82656 -11.56803 -11.56198 -11.46578 -11.40174 -11.37975 -11.27059 -10.85002 -10.25785 -9.70851 -9.38812 -9.07308 -8.95585 -7.91769 -5.19682 -0.27954 0.01728 1.44741 1.47486 1.55154 1.66585 1.79175 1.93286 2.09942 2.56842 2.89958 2.96574 3.40206 3.46661 3.56736 3.69344 3.78489 3.82579 3.97632 4.00491 4.22993 4.34033 4.39808 4.43771 4.47465 4.54711 4.56267 4.68201 4.76642 4.77629 4.81659 4.93590 4.98593 4.99839 5.08135 5.11713 5.24086 5.29817 5.32248 5.39595 5.44628 5.49608 5.52169 5.59103 5.60554 5.88582 6.29963 6.52758 6.59255 6.74734 7.11039 7.35053 8.12671 8.33923 9.31980 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.002895 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.549174 B = 9670.460700 C =10629.722098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.080 4.080 3 Si 0.969 3.031 4 H -0.284 1.284 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.231 4.231 8 H 0.079 0.921 9 N -0.729 5.729 10 C 0.171 3.829 11 H 0.057 0.943 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.089 4.089 15 H 0.140 0.860 16 C 0.114 3.886 17 N -0.595 5.595 18 C 0.566 3.434 19 O -0.588 6.588 20 C 0.055 3.945 21 C -0.118 4.118 22 C -0.078 4.078 23 C 0.060 3.940 24 N -0.573 5.573 25 H 0.439 0.561 26 C 0.101 3.899 27 C -0.213 4.213 28 C 0.059 3.941 29 N -0.425 5.425 30 C 0.138 3.862 31 C -0.113 4.113 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.368 0.632 35 H 0.091 0.909 36 H 0.040 0.960 37 H 0.095 0.905 38 H 0.035 0.965 39 H 0.070 0.930 40 H 0.113 0.887 41 H 0.143 0.857 42 H 0.175 0.825 43 H 0.231 0.769 44 H 0.170 0.830 45 H 0.049 0.951 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.672 -30.129 15.394 33.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.211 1.211 5 H -0.230 1.230 6 H -0.193 1.193 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.368 5.368 10 C 0.062 3.938 11 H 0.075 0.925 12 C -0.160 4.160 13 C -0.141 4.141 14 C -0.108 4.108 15 H 0.158 0.842 16 C -0.008 4.008 17 N -0.325 5.325 18 C 0.355 3.645 19 O -0.469 6.469 20 C -0.091 4.091 21 C -0.140 4.140 22 C -0.106 4.106 23 C -0.053 4.053 24 N -0.177 5.177 25 H 0.280 0.720 26 C -0.027 4.027 27 C -0.238 4.238 28 C -0.078 4.078 29 N -0.137 5.137 30 C 0.016 3.984 31 C -0.135 4.135 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.200 0.800 35 H 0.109 0.891 36 H 0.059 0.941 37 H 0.114 0.886 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.131 0.869 41 H 0.161 0.839 42 H 0.193 0.807 43 H 0.247 0.753 44 H 0.187 0.813 45 H 0.067 0.933 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.043 -29.559 14.951 33.188 hybrid contribution -1.232 2.118 0.808 2.580 sum 0.811 -27.441 15.759 31.654 Atomic orbital electron populations 1.69839 1.06747 1.25730 1.59947 1.25555 0.96242 1.01133 1.04258 0.85196 0.77689 0.79845 0.77425 1.21128 1.22975 1.19341 1.19613 0.91421 0.85055 1.40167 0.90273 1.42750 1.05118 1.01070 1.87895 1.21140 0.94755 0.85223 0.92717 0.92509 1.22489 0.99372 0.95335 0.98820 1.22124 0.96833 0.99560 0.95552 1.23371 0.99610 0.94153 0.93647 0.84245 1.22750 0.94065 0.89045 0.94934 1.48518 1.34263 1.15663 1.34094 1.18150 0.79311 0.87153 0.79885 1.90765 1.51743 1.33970 1.70452 1.20506 0.98088 0.91916 0.98588 1.21740 0.97290 1.00184 0.94808 1.20679 1.00201 0.88892 1.00829 1.19345 0.99464 0.88865 0.97592 1.41727 1.34146 1.07947 1.33925 0.72004 1.22756 0.88635 0.98474 0.92810 1.21927 1.06788 0.89389 1.05693 1.20855 0.97584 0.94508 0.94813 1.67066 1.24202 0.98140 1.24252 1.21623 0.98502 0.87653 0.90655 1.23448 0.96785 0.96317 0.96951 0.89554 0.94372 0.79951 0.89061 0.94113 0.88646 0.94606 0.91217 0.86935 0.83947 0.80719 0.75253 0.81269 0.93287 0.95879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -63.45 13.06 21.65 0.28 -63.17 16 2 C -0.08 -4.84 5.50 84.86 0.47 -4.37 16 3 Si 0.97 48.77 29.55 68.60 2.03 50.80 16 4 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 5 H -0.30 -15.62 7.11 99.48 0.71 -14.92 16 6 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.23 -13.19 9.95 84.03 0.84 -12.35 16 8 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 9 N -0.73 -38.13 3.61 -318.70 -1.15 -39.28 16 10 C 0.17 6.78 3.24 45.89 0.15 6.93 16 11 H 0.06 2.19 8.10 -2.39 -0.02 2.17 16 12 C -0.12 -4.00 6.64 31.56 0.21 -3.79 16 13 C -0.10 -2.90 5.90 31.47 0.19 -2.71 16 14 C -0.09 -2.36 4.22 -8.53 -0.04 -2.39 16 15 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 16 C 0.11 3.30 5.26 86.86 0.46 3.76 16 17 N -0.59 -23.15 2.88 -815.59 -2.35 -25.50 16 18 C 0.57 23.59 7.84 86.85 0.68 24.27 16 19 O -0.59 -29.54 16.63 -3.80 -0.06 -29.60 16 20 C 0.05 1.80 6.72 42.03 0.28 2.08 16 21 C -0.12 -3.19 9.60 22.61 0.22 -2.97 16 22 C -0.08 -1.40 10.18 22.49 0.23 -1.17 16 23 C 0.06 1.00 7.29 39.25 0.29 1.29 16 24 N -0.57 -4.02 6.05 -187.39 -1.13 -5.15 16 25 H 0.44 -0.14 8.96 -92.71 -0.83 -0.97 16 26 C 0.10 0.52 11.81 83.03 0.98 1.50 16 27 C -0.21 -2.76 11.08 23.54 0.26 -2.50 16 28 C 0.06 1.29 7.52 41.93 0.32 1.61 16 29 N -0.42 -12.02 6.60 -174.25 -1.15 -13.17 16 30 C 0.14 6.19 5.42 86.65 0.47 6.65 16 31 C -0.11 -4.08 3.92 -8.99 -0.04 -4.11 16 32 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.37 21.45 6.93 -92.70 -0.64 20.80 16 35 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.04 1.54 7.69 -2.39 -0.02 1.52 16 37 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.04 1.21 7.39 -2.39 -0.02 1.20 16 39 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.11 3.12 5.79 -2.39 -0.01 3.10 16 41 H 0.14 4.00 7.61 -2.91 -0.02 3.97 16 42 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 43 H 0.23 -1.18 8.06 -2.91 -0.02 -1.21 16 44 H 0.17 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.05 2.60 6.16 -2.39 -0.01 2.58 16 46 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -86.57 369.59 1.98 -84.60 By element: Atomic # 1 Polarization: 29.20 SS G_CDS: -0.44 Total: 28.76 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 5.95 Total: 11.72 kcal Atomic # 7 Polarization: -140.77 SS G_CDS: -5.50 Total: -146.27 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.06 Total: -29.60 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 2.03 Total: 50.80 kcal Total: -86.57 1.98 -84.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.749 kcal (2) G-P(sol) polarization free energy of solvation -86.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds