Wall clock time and date at job start Tue Mar 31 2020 22:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21525 * 120.00174 * 179.97438 * 18 17 16 20 20 C 1.48064 * 119.99571 * 359.96575 * 18 17 16 21 21 C 1.39767 * 119.46783 * 179.72700 * 20 18 17 22 22 C 1.38137 * 119.57120 * 179.72708 * 21 20 18 23 23 C 1.39250 * 118.38062 * 0.53230 * 22 21 20 24 24 N 1.37348 * 133.61567 * 179.73594 * 23 22 21 25 25 H 0.97004 * 125.04995 * 0.02562 * 24 23 22 26 26 C 1.36719 * 109.89826 * 179.97438 * 24 23 22 27 27 C 1.34284 * 110.01948 * 359.97438 * 26 24 23 28 28 C 1.41194 * 119.09840 * 359.72728 * 23 22 21 29 29 N 1.32450 * 119.47336 * 359.97438 * 20 18 17 30 30 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 31 31 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 32 32 H 1.09001 * 109.99421 * 198.25759 * 31 10 9 33 33 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 34 34 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 35 35 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 36 36 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 37 37 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 38 38 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 39 39 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 40 40 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 41 41 H 1.07996 * 120.21517 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.80865 * 180.28855 * 22 21 20 43 43 H 1.08000 * 124.98938 * 179.97438 * 26 24 23 44 44 H 1.08003 * 126.48088 * 179.97438 * 27 26 24 45 45 H 1.09000 * 110.84547 * 216.66722 * 30 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9951 -3.5524 0.5609 12 6 2.3253 -4.1406 -1.4447 13 6 1.4374 -5.4132 -1.6402 14 6 0.3419 -5.1772 -0.6282 15 1 -0.2834 -4.3444 -0.9503 16 6 -0.5069 -6.2439 0.0062 17 7 -0.7350 -5.7712 1.4029 18 6 -1.5540 -6.3405 2.3093 19 8 -1.6562 -5.8613 3.4215 20 6 -2.3293 -7.5496 1.9500 21 6 -3.1710 -8.1343 2.9003 22 6 -3.8997 -9.2591 2.5656 23 6 -3.7587 -9.7814 1.2825 24 7 -4.3099 -10.8582 0.6320 25 1 -4.9485 -11.4766 1.0205 26 6 -3.8257 -10.9285 -0.6446 27 6 -2.9631 -9.9232 -0.8651 28 6 -2.8864 -9.1438 0.3736 29 7 -2.2105 -8.0627 0.7347 30 6 0.1077 -4.5529 1.6194 31 6 1.2163 -4.7473 0.6142 32 1 1.8479 -5.5839 0.9131 33 1 -0.4850 0.8400 -0.0004 34 1 0.3556 -2.3880 0.0068 35 1 2.0364 -3.3673 -2.1565 36 1 3.3781 -4.3937 -1.5700 37 1 1.9964 -6.3193 -1.4067 38 1 1.0326 -5.4561 -2.6513 39 1 0.0221 -7.1970 0.0100 40 1 -1.4557 -6.3396 -0.5216 41 1 -3.2542 -7.7071 3.8887 42 1 -4.5596 -9.7244 3.2828 43 1 -4.0972 -11.6818 -1.3693 44 1 -2.4263 -9.7271 -1.7815 45 1 0.5040 -4.5308 2.6345 46 1 -0.4556 -3.6448 1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026311823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:45 Heat of formation + Delta-G solvation = 78.921800 kcal Electronic energy + Delta-G solvation = -29258.650979 eV Core-core repulsion = 25342.879603 eV Total energy + Delta-G solvation = -3915.771376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.85620 -40.34898 -38.87688 -37.38579 -35.11064 -33.32061 -33.02496 -30.79160 -30.68339 -29.76818 -28.93019 -28.31567 -25.45511 -24.75857 -23.28615 -23.16953 -22.36959 -21.19388 -19.81553 -19.53583 -18.76019 -18.54208 -17.39361 -17.06006 -16.96608 -15.88554 -15.49648 -15.01636 -14.95701 -14.86557 -14.28095 -14.19717 -13.85205 -13.68046 -13.50894 -13.46778 -13.18860 -12.98460 -12.75846 -12.54336 -12.35177 -12.07206 -11.70692 -11.40970 -11.05961 -10.85926 -10.77065 -10.66219 -10.50761 -10.40327 -10.14016 -10.10192 -10.02449 -9.53444 -9.44731 -9.30130 -8.85728 -8.74949 -8.46789 -8.28563 -6.90665 -5.71533 -3.00153 0.62124 0.80859 2.27083 2.59791 2.90103 3.07503 3.47522 3.52918 3.54591 3.80677 3.88584 4.31600 4.33654 4.60085 4.62906 4.64250 4.74489 4.96136 5.15747 5.25416 5.34490 5.41652 5.53305 5.59878 5.62847 5.74681 5.74987 5.79064 5.91275 5.96877 5.99544 6.03266 6.10998 6.17930 6.19944 6.28865 6.40547 6.45467 6.53151 6.56435 6.64219 6.66692 6.78482 6.94874 6.97248 7.14612 7.63991 7.76151 7.78409 8.35672 8.47025 9.58213 10.15606 10.50229 11.50968 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002607 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.536702 B =10739.239415 C =11496.977197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.905 3.095 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.195 3.805 11 H 0.056 0.944 12 C -0.145 4.145 13 C -0.094 4.094 14 C -0.133 4.133 15 H 0.086 0.914 16 C 0.143 3.857 17 N -0.603 5.603 18 C 0.583 3.417 19 O -0.542 6.542 20 C 0.081 3.919 21 C -0.096 4.096 22 C -0.095 4.095 23 C 0.062 3.938 24 N -0.590 5.590 25 H 0.419 0.581 26 C 0.064 3.936 27 C -0.181 4.181 28 C 0.086 3.914 29 N -0.409 5.409 30 C 0.131 3.869 31 C -0.122 4.122 32 H 0.074 0.926 33 H 0.255 0.745 34 H 0.384 0.616 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.179 0.821 44 H 0.158 0.842 45 H 0.077 0.923 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 -26.784 -1.148 28.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.219 1.219 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.083 3.917 11 H 0.074 0.926 12 C -0.186 4.186 13 C -0.132 4.132 14 C -0.152 4.152 15 H 0.105 0.895 16 C 0.021 3.979 17 N -0.336 5.336 18 C 0.370 3.630 19 O -0.420 6.420 20 C -0.067 4.067 21 C -0.119 4.119 22 C -0.123 4.123 23 C -0.049 4.049 24 N -0.194 5.194 25 H 0.256 0.744 26 C -0.064 4.064 27 C -0.206 4.206 28 C -0.050 4.050 29 N -0.121 5.121 30 C 0.010 3.990 31 C -0.142 4.142 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.219 0.781 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.170 0.830 42 H 0.156 0.844 43 H 0.197 0.803 44 H 0.175 0.825 45 H 0.095 0.905 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.858 -26.092 -1.088 27.271 hybrid contribution -0.814 0.158 0.605 1.026 sum -8.672 -25.934 -0.483 27.350 Atomic orbital electron populations 1.69651 1.05069 1.25625 1.57690 1.24728 0.95471 0.97624 1.03075 0.86218 0.78672 0.84060 0.77398 1.21854 1.21881 1.20808 1.19252 0.91005 0.84101 1.42577 0.91141 1.42445 1.05723 0.99575 1.88207 1.20135 0.93993 0.85295 0.92241 0.92617 1.23855 0.97816 0.96241 1.00651 1.21678 0.95565 0.98395 0.97551 1.22354 0.96937 0.99241 0.96663 0.89549 1.21263 0.99823 0.96181 0.80654 1.49676 1.42060 1.28549 1.13276 1.17395 0.79179 0.82505 0.83886 1.90784 1.66202 1.64026 1.20985 1.20961 0.98830 0.96994 0.89909 1.21751 0.94637 0.94430 1.01032 1.20415 1.01589 0.97038 0.93303 1.19291 0.98693 0.91450 0.95432 1.41611 1.40554 1.25481 1.11777 0.74409 1.21955 0.97658 1.00653 0.86110 1.21627 1.04788 0.96675 0.97540 1.20124 0.96392 0.93671 0.94769 1.67233 1.19622 1.08538 1.16674 1.21489 0.91042 0.86906 0.99534 1.22473 0.96247 1.00412 0.95088 0.90797 0.93538 0.78104 0.90650 0.92964 0.92160 0.92146 0.91371 0.90236 0.82970 0.84431 0.80343 0.82455 0.90451 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 3 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 9 N -0.72 -17.54 4.80 -53.20 -0.26 -17.80 16 10 C 0.19 3.79 3.46 -67.70 -0.23 3.56 16 11 H 0.06 1.11 8.09 -51.93 -0.42 0.69 16 12 C -0.14 -2.47 6.73 -23.33 -0.16 -2.62 16 13 C -0.09 -1.34 6.71 -25.91 -0.17 -1.51 16 14 C -0.13 -2.09 2.73 -90.27 -0.25 -2.34 16 15 H 0.09 1.58 7.64 -51.93 -0.40 1.18 16 16 C 0.14 2.13 5.25 -3.86 -0.02 2.11 16 17 N -0.60 -10.34 3.43 -172.59 -0.59 -10.94 16 18 C 0.58 10.28 7.86 -12.23 -0.10 10.19 16 19 O -0.54 -10.91 16.63 5.34 0.09 -10.82 16 20 C 0.08 1.19 6.72 -83.00 -0.56 0.64 16 21 C -0.10 -1.16 9.60 -39.05 -0.37 -1.54 16 22 C -0.09 -0.87 10.18 -39.24 -0.40 -1.27 16 23 C 0.06 0.59 7.29 -83.90 -0.61 -0.02 16 24 N -0.59 -3.45 6.05 -10.58 -0.06 -3.52 16 25 H 0.42 1.03 8.96 -40.82 -0.37 0.66 16 26 C 0.06 0.35 11.81 -16.77 -0.20 0.15 16 27 C -0.18 -1.54 11.08 -37.63 -0.42 -1.95 16 28 C 0.09 1.02 7.52 -83.10 -0.62 0.39 16 29 N -0.41 -5.73 6.96 -6.43 -0.04 -5.77 16 30 C 0.13 2.42 6.53 -3.31 -0.02 2.40 16 31 C -0.12 -2.09 2.60 -90.34 -0.23 -2.32 16 32 H 0.07 1.17 8.13 -51.93 -0.42 0.75 16 33 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.38 10.03 6.19 -40.82 -0.25 9.78 16 35 H 0.07 1.47 7.98 -51.93 -0.41 1.05 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.97 7.92 -51.93 -0.41 0.56 16 40 H 0.08 1.20 7.12 -51.93 -0.37 0.83 16 41 H 0.15 1.72 7.61 -52.49 -0.40 1.32 16 42 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 43 H 0.18 0.25 8.06 -52.49 -0.42 -0.18 16 44 H 0.16 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 46 H 0.09 1.83 6.96 -51.93 -0.36 1.47 16 LS Contribution 372.76 15.07 5.62 5.62 Total: -1.00 -34.26 372.76 -10.48 -44.74 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.32 Total: 9.72 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -4.61 Total: -1.27 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.23 Total: -65.48 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.26 -10.48 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.662 kcal (2) G-P(sol) polarization free energy of solvation -34.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds