Wall clock time and date at job start Tue Mar 31 2020 22:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99741 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99902 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99702 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 H 1.09001 * 110.44040 * 32.43658 * 10 9 7 12 12 C 1.55947 * 110.48996 * 269.73257 * 10 9 7 13 13 C 1.56398 * 105.78962 * 248.87230 * 12 10 9 14 14 C 1.51000 * 101.59328 * 25.02347 * 13 12 10 15 15 H 1.09003 * 109.72709 * 69.23846 * 14 13 12 16 16 C 1.50351 * 125.55340 * 203.98719 * 14 13 12 17 17 N 1.49212 * 104.86393 * 144.30755 * 16 14 13 18 18 C 1.34776 * 126.06141 * 172.96855 * 17 16 14 19 19 O 1.21525 * 120.00174 * 179.97438 * 18 17 16 20 20 C 1.48064 * 119.99571 * 359.96575 * 18 17 16 21 21 C 1.39767 * 119.46783 * 179.72700 * 20 18 17 22 22 C 1.38137 * 119.57120 * 179.72708 * 21 20 18 23 23 C 1.39250 * 118.38062 * 0.53230 * 22 21 20 24 24 N 1.37348 * 133.61567 * 179.73594 * 23 22 21 25 25 H 0.97004 * 125.04995 * 0.02562 * 24 23 22 26 26 C 1.36719 * 109.89826 * 179.97438 * 24 23 22 27 27 C 1.34284 * 110.01948 * 359.97438 * 26 24 23 28 28 C 1.41194 * 119.09840 * 359.72728 * 23 22 21 29 29 N 1.32450 * 119.47336 * 359.97438 * 20 18 17 30 30 C 1.49702 * 107.88254 * 352.93997 * 17 16 14 31 31 C 1.50293 * 110.49293 * 155.00395 * 10 9 7 32 32 H 1.09001 * 109.99421 * 198.25759 * 31 10 9 33 33 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 34 34 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 35 35 H 1.09000 * 110.18730 * 7.95849 * 12 10 9 36 36 H 1.09000 * 110.18179 * 129.79550 * 12 10 9 37 37 H 1.08995 * 111.00692 * 266.94409 * 13 12 10 38 38 H 1.08997 * 111.03286 * 143.11333 * 13 12 10 39 39 H 1.09007 * 110.35675 * 25.46544 * 16 14 13 40 40 H 1.08995 * 110.45453 * 263.20530 * 16 14 13 41 41 H 1.07996 * 120.21517 * 359.97438 * 21 20 18 42 42 H 1.08005 * 120.80865 * 180.28855 * 22 21 20 43 43 H 1.08000 * 124.98938 * 179.97438 * 26 24 23 44 44 H 1.08003 * 126.48088 * 179.97438 * 27 26 24 45 45 H 1.09000 * 110.84547 * 216.66722 * 30 17 16 46 46 H 1.08998 * 111.01935 * 93.13449 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5476 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 2.0582 -3.6567 0.0135 11 1 2.9951 -3.5524 0.5609 12 6 2.3253 -4.1406 -1.4447 13 6 1.4374 -5.4132 -1.6402 14 6 0.3419 -5.1772 -0.6282 15 1 -0.2834 -4.3444 -0.9503 16 6 -0.5069 -6.2439 0.0062 17 7 -0.7350 -5.7712 1.4029 18 6 -1.5540 -6.3405 2.3093 19 8 -1.6562 -5.8613 3.4215 20 6 -2.3293 -7.5496 1.9500 21 6 -3.1710 -8.1343 2.9003 22 6 -3.8997 -9.2591 2.5656 23 6 -3.7587 -9.7814 1.2825 24 7 -4.3099 -10.8582 0.6320 25 1 -4.9485 -11.4766 1.0205 26 6 -3.8257 -10.9285 -0.6446 27 6 -2.9631 -9.9232 -0.8651 28 6 -2.8864 -9.1438 0.3736 29 7 -2.2105 -8.0627 0.7347 30 6 0.1077 -4.5529 1.6194 31 6 1.2163 -4.7473 0.6142 32 1 1.8479 -5.5839 0.9131 33 1 -0.4850 0.8400 -0.0004 34 1 0.3556 -2.3880 0.0068 35 1 2.0364 -3.3673 -2.1565 36 1 3.3781 -4.3937 -1.5700 37 1 1.9964 -6.3193 -1.4067 38 1 1.0326 -5.4561 -2.6513 39 1 0.0221 -7.1970 0.0100 40 1 -1.4557 -6.3396 -0.5216 41 1 -3.2542 -7.7071 3.8887 42 1 -4.5596 -9.7244 3.2828 43 1 -4.0972 -11.6818 -1.3693 44 1 -2.4263 -9.7271 -1.7815 45 1 0.5040 -4.5308 2.6345 46 1 -0.4556 -3.6448 1.4049 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026311823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:48:44 Heat of formation + Delta-G solvation = 56.084874 kcal Electronic energy + Delta-G solvation = -29259.641262 eV Core-core repulsion = 25342.879603 eV Total energy + Delta-G solvation = -3916.761660 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.58519 -41.69257 -40.09701 -38.38625 -36.69826 -35.05955 -33.88450 -32.57695 -31.71507 -30.49559 -30.18794 -29.82596 -27.02740 -25.78816 -25.14384 -24.22914 -23.43540 -21.83518 -21.12142 -20.67872 -20.30078 -19.43719 -19.17319 -18.24773 -17.82590 -17.25466 -16.76690 -16.53450 -16.02549 -15.83282 -15.75705 -15.63295 -15.20633 -14.92556 -14.82731 -14.47237 -14.18272 -13.95424 -13.78081 -13.66249 -13.53215 -13.35600 -13.21503 -13.10000 -12.82494 -12.63407 -12.33571 -12.20754 -12.03232 -11.83471 -11.50143 -11.40619 -11.39197 -11.36476 -10.90908 -10.84612 -10.33199 -9.81828 -9.43465 -9.07870 -8.95285 -7.90242 -5.17811 -0.26955 0.02840 1.47936 1.49644 1.57797 1.65324 1.74952 1.78519 2.07665 2.58894 2.90039 2.91095 3.05501 3.43742 3.57494 3.70583 3.78013 3.95474 3.98585 4.01547 4.05743 4.25460 4.35954 4.43545 4.50104 4.52427 4.56347 4.63743 4.68216 4.72822 4.83368 4.86492 4.95756 4.98849 5.00053 5.05764 5.13281 5.23926 5.26268 5.39262 5.40148 5.46648 5.48165 5.56855 5.70355 5.87418 6.31867 6.41240 6.58969 6.72259 7.06340 7.37737 8.15137 8.37526 9.33402 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019379 B = 0.002607 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.536702 B =10739.239415 C =11496.977197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.079 4.079 3 Si 0.970 3.030 4 H -0.287 1.287 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.232 4.232 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.184 3.816 11 H 0.054 0.946 12 C -0.136 4.136 13 C -0.079 4.079 14 C -0.119 4.119 15 H 0.053 0.947 16 C 0.156 3.844 17 N -0.607 5.607 18 C 0.576 3.424 19 O -0.581 6.581 20 C 0.050 3.950 21 C -0.113 4.113 22 C -0.079 4.079 23 C 0.060 3.940 24 N -0.572 5.572 25 H 0.439 0.561 26 C 0.101 3.899 27 C -0.216 4.216 28 C 0.058 3.942 29 N -0.429 5.429 30 C 0.134 3.866 31 C -0.118 4.118 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.372 0.628 35 H 0.047 0.953 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.149 0.851 42 H 0.177 0.823 43 H 0.230 0.770 44 H 0.165 0.835 45 H 0.065 0.935 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.488 -31.034 -2.654 32.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.800 3.200 4 H -0.215 1.215 5 H -0.228 1.228 6 H -0.194 1.194 7 C -0.364 4.364 8 H 0.096 0.904 9 N -0.370 5.370 10 C 0.075 3.925 11 H 0.072 0.928 12 C -0.177 4.177 13 C -0.117 4.117 14 C -0.138 4.138 15 H 0.072 0.928 16 C 0.036 3.964 17 N -0.339 5.339 18 C 0.365 3.635 19 O -0.462 6.462 20 C -0.096 4.096 21 C -0.136 4.136 22 C -0.107 4.107 23 C -0.052 4.052 24 N -0.177 5.177 25 H 0.280 0.720 26 C -0.027 4.027 27 C -0.241 4.241 28 C -0.079 4.079 29 N -0.141 5.141 30 C 0.012 3.988 31 C -0.138 4.138 32 H 0.116 0.884 33 H 0.057 0.943 34 H 0.204 0.796 35 H 0.066 0.934 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.167 0.833 42 H 0.194 0.806 43 H 0.246 0.754 44 H 0.183 0.817 45 H 0.084 0.916 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.951 -30.411 -2.610 31.541 hybrid contribution -0.857 1.259 1.020 1.833 sum -8.808 -29.152 -1.590 30.495 Atomic orbital electron populations 1.69827 1.06654 1.25753 1.60098 1.25523 0.96265 1.00998 1.04324 0.85179 0.77693 0.79840 0.77308 1.21465 1.22786 1.19410 1.19661 0.91491 0.85183 1.40083 0.90375 1.42620 1.05329 1.00756 1.88319 1.20437 0.93728 0.84013 0.94337 0.92820 1.23648 0.99896 0.96761 0.97360 1.21646 0.94283 0.98024 0.97784 1.22289 0.96684 0.98353 0.96460 0.92824 1.21224 0.99751 0.96259 0.79206 1.49763 1.41932 1.27912 1.14254 1.18029 0.78846 0.83256 0.83349 1.90732 1.67449 1.65487 1.22532 1.20561 1.00605 0.96928 0.91512 1.21769 0.95422 0.95829 1.00550 1.20709 1.00557 0.95502 0.93962 1.19377 0.98321 0.92243 0.95276 1.41718 1.39939 1.24342 1.11708 0.71958 1.22717 0.94503 0.99574 0.85931 1.21918 1.07194 0.97839 0.97153 1.20769 0.96784 0.93517 0.96843 1.67061 1.20873 1.09860 1.16261 1.21237 0.91533 0.86584 0.99404 1.22338 0.96061 1.00147 0.95260 0.88377 0.94324 0.79571 0.93418 0.90532 0.89028 0.90580 0.89651 0.90364 0.83321 0.80579 0.75371 0.81696 0.91644 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.48 13.06 21.65 0.28 -61.20 16 2 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 3 Si 0.97 47.48 29.55 68.60 2.03 49.50 16 4 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 5 H -0.30 -15.01 7.11 99.48 0.71 -14.31 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.23 -13.01 9.96 84.03 0.84 -12.17 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 9 N -0.73 -37.14 4.80 -322.23 -1.55 -38.69 16 10 C 0.18 7.24 3.46 45.14 0.16 7.40 16 11 H 0.05 2.12 8.09 -2.39 -0.02 2.10 16 12 C -0.14 -4.48 6.73 32.80 0.22 -4.26 16 13 C -0.08 -2.08 6.71 31.13 0.21 -1.87 16 14 C -0.12 -3.74 2.73 -10.56 -0.03 -3.77 16 15 H 0.05 2.06 7.64 -2.39 -0.02 2.04 16 16 C 0.16 4.72 5.25 85.00 0.45 5.16 16 17 N -0.61 -22.01 3.43 -818.24 -2.80 -24.82 16 18 C 0.58 21.72 7.86 86.85 0.68 22.41 16 19 O -0.58 -25.32 16.63 -3.79 -0.06 -25.38 16 20 C 0.05 1.54 6.72 42.03 0.28 1.82 16 21 C -0.11 -2.77 9.60 22.62 0.22 -2.55 16 22 C -0.08 -1.30 10.18 22.49 0.23 -1.07 16 23 C 0.06 0.99 7.29 39.25 0.29 1.27 16 24 N -0.57 -4.02 6.05 -187.40 -1.13 -5.15 16 25 H 0.44 -0.22 8.96 -92.71 -0.83 -1.05 16 26 C 0.10 0.59 11.81 83.03 0.98 1.57 16 27 C -0.22 -3.04 11.08 23.53 0.26 -2.78 16 28 C 0.06 1.27 7.52 41.93 0.32 1.59 16 29 N -0.43 -12.05 6.96 -174.25 -1.21 -13.26 16 30 C 0.13 5.34 6.53 85.07 0.56 5.90 16 31 C -0.12 -4.10 2.60 -10.61 -0.03 -4.13 16 32 H 0.10 2.98 8.13 -2.39 -0.02 2.96 16 33 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 34 H 0.37 20.69 6.19 -92.71 -0.57 20.12 16 35 H 0.05 1.84 7.98 -2.39 -0.02 1.82 16 36 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.09 2.32 7.92 -2.38 -0.02 2.30 16 40 H 0.08 2.41 7.12 -2.39 -0.02 2.39 16 41 H 0.15 3.59 7.61 -2.91 -0.02 3.56 16 42 H 0.18 1.41 8.06 -2.91 -0.02 1.38 16 43 H 0.23 -0.97 8.06 -2.91 -0.02 -1.00 16 44 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.07 2.70 8.09 -2.39 -0.02 2.68 16 46 H 0.05 2.36 6.96 -2.39 -0.02 2.35 16 Total: -1.00 -80.93 372.76 1.26 -79.67 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -0.38 Total: 29.02 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.09 Total: 10.31 kcal Atomic # 7 Polarization: -136.71 SS G_CDS: -6.42 Total: -143.12 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.06 Total: -25.38 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.50 kcal Total: -80.93 1.26 -79.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026311823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.756 kcal (2) G-P(sol) polarization free energy of solvation -80.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds