Wall clock time and date at job start Tue Mar 31 2020 23:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40157 * 119.84686 * 2 1 4 4 C 1.36440 * 119.41487 * 179.97438 * 3 2 1 5 5 C 1.40099 * 119.25455 * 0.25068 * 4 3 2 6 6 C 1.40849 * 132.86920 * 179.74914 * 5 4 3 7 7 C 1.46565 * 126.57786 * 359.97438 * 6 5 4 8 8 O 1.21720 * 120.00428 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00034 * 179.97438 * 7 6 5 10 10 C 1.47869 * 126.94507 * 0.03060 * 9 7 6 11 11 C 1.56014 * 105.10831 * 181.97707 * 10 9 7 12 12 H 1.09002 * 116.25233 * 158.83421 * 11 10 9 13 13 C 1.57089 * 99.60501 * 32.79977 * 11 10 9 14 14 C 1.49290 * 126.94864 * 179.70582 * 9 7 6 15 15 H 1.09000 * 116.14802 * 15.86828 * 14 9 7 16 16 C 1.58424 * 103.70453 * 246.55257 * 14 9 7 17 17 N 1.47873 * 104.83199 * 288.54407 * 16 14 9 18 18 C 1.36934 * 126.94340 * 182.30300 * 17 16 14 19 19 H 1.08004 * 119.99778 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.00567 * 0.02562 * 18 17 16 21 21 N 1.31625 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00398 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.46964 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47144 * 119.99733 * 22 20 18 25 25 H 1.48507 * 109.46989 * 239.99879 * 22 20 18 26 26 C 1.40552 * 106.83990 * 179.97438 * 6 5 4 27 27 N 1.30741 * 108.74614 * 359.56139 * 26 6 5 28 28 N 1.36573 * 120.22524 * 359.50859 * 5 4 3 29 29 C 1.35190 * 119.83876 * 180.02562 * 2 1 3 30 30 C 1.50705 * 119.64636 * 359.97438 * 29 2 1 31 31 H 1.09000 * 109.47577 * 95.72118 * 1 2 3 32 32 H 1.09008 * 109.47615 * 215.72514 * 1 2 3 33 33 H 1.09002 * 109.47166 * 335.71718 * 1 2 3 34 34 H 1.08007 * 120.29130 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.37502 * 179.97438 * 4 3 2 36 36 H 1.09006 * 110.31232 * 300.88062 * 10 9 7 37 37 H 1.08994 * 110.31657 * 62.96290 * 10 9 7 38 38 H 1.08998 * 112.36225 * 64.28044 * 13 11 10 39 39 H 1.09005 * 112.36897 * 191.71387 * 13 11 10 40 40 H 1.09004 * 110.19296 * 169.85380 * 16 14 9 41 41 H 1.09000 * 110.79233 * 47.53691 * 16 14 9 42 42 H 0.96996 * 120.00344 * 180.02562 * 21 20 18 43 43 H 1.08005 * 125.62714 * 179.97438 * 26 6 5 44 44 H 1.08998 * 109.46586 * 84.28340 * 30 29 2 45 45 H 1.09004 * 109.47007 * 204.28145 * 30 29 2 46 46 H 1.08997 * 109.46753 * 324.27750 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2045 1.2157 0.0000 4 6 3.5688 1.2054 0.0005 5 6 4.2443 -0.0220 -0.0043 6 6 5.6106 -0.3639 -0.0096 7 6 6.7436 0.5659 -0.0121 8 8 6.5454 1.7669 -0.0090 9 7 8.0050 0.0912 -0.0168 10 6 8.4205 -1.3279 -0.0206 11 6 9.9796 -1.2952 0.0267 12 1 10.4702 -2.2005 0.3842 13 6 10.1886 0.0022 0.8873 14 6 9.2650 0.8918 -0.0260 15 1 9.1671 1.9447 0.2383 16 6 9.9031 0.5711 -1.4402 17 7 10.3747 -0.8264 -1.3345 18 6 11.0395 -1.5453 -2.2918 19 1 11.3338 -2.5654 -2.0938 20 6 11.3362 -0.9627 -3.5163 21 7 10.9780 0.2807 -3.7574 22 14 12.2424 -1.9436 -4.8224 23 1 12.5298 -3.3064 -4.3074 24 1 11.3997 -2.0420 -6.0412 25 1 13.5187 -1.2619 -5.1567 26 6 5.6791 -1.7677 -0.0121 27 7 4.4631 -2.2478 0.0008 28 7 3.5419 -1.1933 0.0007 29 6 2.1796 -1.1727 -0.0005 30 6 1.4144 -2.4710 -0.0005 31 1 -0.3634 -0.1024 -1.0225 32 1 -0.3634 -0.8343 0.6001 33 1 -0.3633 0.9368 0.4226 34 1 1.6667 2.1523 -0.0004 35 1 4.1220 2.1330 0.0001 36 1 8.0260 -1.8400 0.8571 37 1 8.0782 -1.8200 -0.9309 38 1 9.7978 -0.1040 1.8992 39 1 11.2247 0.3407 0.8826 40 1 10.7416 1.2398 -1.6350 41 1 9.1575 0.6602 -2.2303 42 1 11.1849 0.6878 -4.6132 43 1 6.5866 -2.3533 -0.0167 44 1 1.1413 -2.7317 -1.0230 45 1 2.0371 -3.2598 0.4217 46 1 0.5114 -2.3604 0.5999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032454452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:44 Heat of formation + Delta-G solvation = 134.607433 kcal Electronic energy + Delta-G solvation = -29715.425036 eV Core-core repulsion = 25802.068370 eV Total energy + Delta-G solvation = -3913.356666 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.25663 -39.85536 -38.13612 -37.33784 -33.96410 -33.64731 -32.67631 -31.42559 -29.81047 -28.79033 -28.62530 -28.43273 -26.19439 -25.25655 -24.08969 -22.91791 -22.46655 -21.45329 -20.25729 -19.68714 -18.58345 -17.78292 -16.88285 -16.49680 -16.11251 -16.01837 -15.50584 -15.24595 -14.82450 -14.48021 -14.19692 -14.04813 -13.85709 -13.60328 -13.33128 -13.18499 -12.96023 -12.94618 -12.59775 -12.16005 -11.94117 -11.89307 -11.78542 -11.62628 -11.47857 -11.28190 -10.97428 -10.84906 -10.79508 -10.70361 -10.54260 -10.32369 -10.15931 -10.03560 -9.61689 -9.38203 -9.33441 -8.68788 -7.97144 -7.54486 -6.89977 -5.74674 -3.09197 0.54389 0.88259 2.04906 2.29969 3.07338 3.38499 3.43483 3.46516 3.47356 3.90436 4.00277 4.39283 4.43604 4.47500 4.57086 4.66839 4.93364 5.02727 5.04700 5.18284 5.21527 5.22701 5.28852 5.30086 5.35959 5.40536 5.47209 5.54244 5.59328 5.64905 5.71750 5.76217 5.90914 5.97316 6.05720 6.19032 6.27360 6.33170 6.39340 6.45962 6.58231 6.61818 6.75223 6.79055 7.43362 7.45846 7.55086 7.75853 8.12054 8.21790 8.77541 9.12439 9.73216 10.42765 11.37274 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002930 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.512713 B = 9553.944631 C =10005.134037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.135 4.135 3 C -0.076 4.076 4 C -0.103 4.103 5 C 0.158 3.842 6 C -0.295 4.295 7 C 0.611 3.389 8 O -0.567 6.567 9 N -0.602 5.602 10 C 0.077 3.923 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.099 3.901 15 H 0.115 0.885 16 C 0.176 3.824 17 N -0.597 5.597 18 C -0.230 4.230 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.109 3.891 27 N -0.323 5.323 28 N -0.264 5.264 29 C 0.134 3.866 30 C -0.115 4.115 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.055 0.945 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.253 0.747 43 H 0.208 0.792 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.387 -2.196 10.981 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.138 4.138 3 C -0.100 4.100 4 C -0.123 4.123 5 C 0.037 3.963 6 C -0.310 4.310 7 C 0.402 3.598 8 O -0.448 6.448 9 N -0.334 5.334 10 C -0.049 4.049 11 C 0.032 3.968 12 H 0.123 0.877 13 C -0.191 4.191 14 C -0.003 4.003 15 H 0.132 0.868 16 C 0.051 3.949 17 N -0.321 5.321 18 C -0.358 4.358 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C -0.071 4.071 27 N -0.145 5.145 28 N -0.028 5.028 29 C 0.026 3.974 30 C -0.172 4.172 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.179 0.821 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.224 0.776 44 H 0.104 0.896 45 H 0.102 0.898 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.060 -2.724 10.708 22.902 hybrid contribution 1.036 0.205 -0.955 1.424 sum -19.024 -2.519 9.752 21.526 Atomic orbital electron populations 1.20728 0.88729 1.03452 1.02865 1.19322 0.97323 0.90950 1.06246 1.21215 0.93648 0.98039 0.97049 1.20884 0.94014 0.96781 1.00588 1.19288 0.91425 0.87146 0.98453 1.19781 0.91414 0.93518 1.26249 1.16399 0.80645 0.86630 0.76116 1.90710 1.84789 1.15522 1.53793 1.48868 1.04491 1.08352 1.71702 1.23539 0.99389 0.82141 0.99793 1.23163 0.90210 0.95926 0.87483 0.87656 1.24183 0.99826 0.98074 0.96979 1.24855 0.81053 0.95350 0.99067 0.86751 1.22384 0.96890 0.85842 0.89806 1.45222 1.66142 1.10562 1.10195 1.19086 1.28936 0.95371 0.92394 0.90083 1.24824 1.01135 0.96488 0.97891 1.69923 1.50933 1.12165 1.23482 0.86048 0.79052 0.78899 0.81738 1.20460 1.21827 1.21766 1.24813 0.96094 0.93755 0.92405 1.77531 0.97817 1.07384 1.31731 1.45983 1.05043 1.06149 1.45640 1.19941 0.79164 0.97895 1.00371 1.20936 0.99759 0.92577 1.03952 0.90666 0.90862 0.90801 0.83856 0.82095 0.92658 0.90822 0.91528 0.89812 0.92709 0.93337 0.93649 0.77560 0.89581 0.89806 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.52 9.45 36.00 0.34 -0.18 16 2 C -0.13 -1.25 5.84 -104.99 -0.61 -1.86 16 3 C -0.08 -0.77 9.73 -39.51 -0.38 -1.15 16 4 C -0.10 -1.42 9.73 -39.53 -0.38 -1.81 16 5 C 0.16 2.57 6.76 -84.07 -0.57 2.01 16 6 C -0.30 -5.29 6.14 -104.68 -0.64 -5.93 16 7 C 0.61 12.31 7.86 -12.90 -0.10 12.21 16 8 O -0.57 -12.57 16.05 5.17 0.08 -12.48 16 9 N -0.60 -11.63 2.95 -156.63 -0.46 -12.09 16 10 C 0.08 1.33 4.36 -1.68 -0.01 1.32 16 11 C 0.14 2.61 5.47 -62.55 -0.34 2.27 16 12 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 13 C -0.15 -2.57 6.86 -22.10 -0.15 -2.72 16 14 C 0.10 1.96 5.35 -60.98 -0.33 1.63 16 15 H 0.11 2.20 8.05 -51.93 -0.42 1.78 16 16 C 0.18 4.27 4.89 -0.29 0.00 4.27 16 17 N -0.60 -14.36 3.03 -154.76 -0.47 -14.83 16 18 C -0.23 -6.11 10.37 -15.06 -0.16 -6.27 16 19 H 0.08 2.05 7.83 -52.48 -0.41 1.64 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.94 10.56 55.49 0.59 -26.35 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 C 0.11 1.74 10.55 -17.14 -0.18 1.56 16 27 N -0.32 -5.12 12.18 30.75 0.37 -4.75 16 28 N -0.26 -3.93 3.85 -6.84 -0.03 -3.96 16 29 C 0.13 1.51 6.81 -81.72 -0.56 0.95 16 30 C -0.12 -0.91 9.49 36.01 0.34 -0.57 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.29 6.15 -51.92 -0.32 -0.03 16 33 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 34 H 0.14 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.16 2.30 7.12 -52.49 -0.37 1.93 16 36 H 0.06 0.78 6.90 -51.93 -0.36 0.42 16 37 H 0.07 1.38 7.19 -51.93 -0.37 1.01 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.05 1.46 7.46 -51.93 -0.39 1.07 16 41 H 0.05 1.37 7.67 -51.93 -0.40 0.97 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.21 2.92 4.51 -52.48 -0.24 2.68 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.76 7.89 -51.93 -0.41 0.35 16 46 H 0.09 0.45 6.15 -51.93 -0.32 0.13 16 LS Contribution 366.67 15.07 5.53 5.53 Total: -1.00 -34.42 366.67 -9.34 -43.76 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -6.09 Total: 2.91 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -3.83 Total: 5.45 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.00 Total: -61.98 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.08 Total: -12.48 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.42 -9.34 -43.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032454452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.363 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds