Wall clock time and date at job start Tue Mar 31 2020 23:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.40157 * 119.84686 * 2 1 4 4 C 1.36440 * 119.41487 * 179.97438 * 3 2 1 5 5 C 1.40099 * 119.25455 * 0.25068 * 4 3 2 6 6 C 1.40849 * 132.86920 * 179.74914 * 5 4 3 7 7 C 1.46565 * 126.57786 * 359.97438 * 6 5 4 8 8 O 1.21720 * 120.00428 * 0.02562 * 7 6 5 9 9 N 1.34778 * 120.00034 * 179.97438 * 7 6 5 10 10 C 1.47869 * 126.94507 * 0.03060 * 9 7 6 11 11 C 1.56014 * 105.10831 * 181.97707 * 10 9 7 12 12 H 1.09002 * 116.25233 * 158.83421 * 11 10 9 13 13 C 1.57089 * 99.60501 * 32.79977 * 11 10 9 14 14 C 1.49290 * 126.94864 * 179.70582 * 9 7 6 15 15 H 1.09000 * 116.14802 * 15.86828 * 14 9 7 16 16 C 1.58424 * 103.70453 * 246.55257 * 14 9 7 17 17 N 1.47873 * 104.83199 * 288.54407 * 16 14 9 18 18 C 1.36934 * 126.94340 * 182.30300 * 17 16 14 19 19 H 1.08004 * 119.99778 * 179.97438 * 18 17 16 20 20 C 1.38806 * 120.00567 * 0.02562 * 18 17 16 21 21 N 1.31625 * 119.99854 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00398 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.46964 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47144 * 119.99733 * 22 20 18 25 25 H 1.48507 * 109.46989 * 239.99879 * 22 20 18 26 26 C 1.40552 * 106.83990 * 179.97438 * 6 5 4 27 27 N 1.30741 * 108.74614 * 359.56139 * 26 6 5 28 28 N 1.36573 * 120.22524 * 359.50859 * 5 4 3 29 29 C 1.35190 * 119.83876 * 180.02562 * 2 1 3 30 30 C 1.50705 * 119.64636 * 359.97438 * 29 2 1 31 31 H 1.09000 * 109.47577 * 95.72118 * 1 2 3 32 32 H 1.09008 * 109.47615 * 215.72514 * 1 2 3 33 33 H 1.09002 * 109.47166 * 335.71718 * 1 2 3 34 34 H 1.08007 * 120.29130 * 359.97438 * 3 2 1 35 35 H 1.08000 * 120.37502 * 179.97438 * 4 3 2 36 36 H 1.09006 * 110.31232 * 300.88062 * 10 9 7 37 37 H 1.08994 * 110.31657 * 62.96290 * 10 9 7 38 38 H 1.08998 * 112.36225 * 64.28044 * 13 11 10 39 39 H 1.09005 * 112.36897 * 191.71387 * 13 11 10 40 40 H 1.09004 * 110.19296 * 169.85380 * 16 14 9 41 41 H 1.09000 * 110.79233 * 47.53691 * 16 14 9 42 42 H 0.96996 * 120.00344 * 180.02562 * 21 20 18 43 43 H 1.08005 * 125.62714 * 179.97438 * 26 6 5 44 44 H 1.08998 * 109.46586 * 84.28340 * 30 29 2 45 45 H 1.09004 * 109.47007 * 204.28145 * 30 29 2 46 46 H 1.08997 * 109.46753 * 324.27750 * 30 29 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2045 1.2157 0.0000 4 6 3.5688 1.2054 0.0005 5 6 4.2443 -0.0220 -0.0043 6 6 5.6106 -0.3639 -0.0096 7 6 6.7436 0.5659 -0.0121 8 8 6.5454 1.7669 -0.0090 9 7 8.0050 0.0912 -0.0168 10 6 8.4205 -1.3279 -0.0206 11 6 9.9796 -1.2952 0.0267 12 1 10.4702 -2.2005 0.3842 13 6 10.1886 0.0022 0.8873 14 6 9.2650 0.8918 -0.0260 15 1 9.1671 1.9447 0.2383 16 6 9.9031 0.5711 -1.4402 17 7 10.3747 -0.8264 -1.3345 18 6 11.0395 -1.5453 -2.2918 19 1 11.3338 -2.5654 -2.0938 20 6 11.3362 -0.9627 -3.5163 21 7 10.9780 0.2807 -3.7574 22 14 12.2424 -1.9436 -4.8224 23 1 12.5298 -3.3064 -4.3074 24 1 11.3997 -2.0420 -6.0412 25 1 13.5187 -1.2619 -5.1567 26 6 5.6791 -1.7677 -0.0121 27 7 4.4631 -2.2478 0.0008 28 7 3.5419 -1.1933 0.0007 29 6 2.1796 -1.1727 -0.0005 30 6 1.4144 -2.4710 -0.0005 31 1 -0.3634 -0.1024 -1.0225 32 1 -0.3634 -0.8343 0.6001 33 1 -0.3633 0.9368 0.4226 34 1 1.6667 2.1523 -0.0004 35 1 4.1220 2.1330 0.0001 36 1 8.0260 -1.8400 0.8571 37 1 8.0782 -1.8200 -0.9309 38 1 9.7978 -0.1040 1.8992 39 1 11.2247 0.3407 0.8826 40 1 10.7416 1.2398 -1.6350 41 1 9.1575 0.6602 -2.2303 42 1 11.1849 0.6878 -4.6132 43 1 6.5866 -2.3533 -0.0167 44 1 1.1413 -2.7317 -1.0230 45 1 2.0371 -3.2598 0.4217 46 1 0.5114 -2.3604 0.5999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032454452.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:43 Heat of formation + Delta-G solvation = 113.009881 kcal Electronic energy + Delta-G solvation = -29716.361576 eV Core-core repulsion = 25802.068370 eV Total energy + Delta-G solvation = -3914.293206 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.33731 -41.40169 -39.29510 -38.72641 -35.48051 -34.87926 -33.82573 -33.02064 -31.17988 -30.27020 -30.12008 -29.32558 -27.13232 -26.94983 -25.67223 -24.20974 -23.47840 -22.67040 -21.71200 -21.27466 -20.13445 -19.06025 -18.48709 -17.65664 -17.47208 -17.18245 -16.93432 -16.56334 -16.12080 -16.02520 -15.66683 -15.24070 -14.92216 -14.83707 -14.60585 -14.43306 -13.84315 -13.67828 -13.62454 -13.47250 -13.27365 -13.24542 -13.10450 -12.97858 -12.78352 -12.74186 -12.46785 -12.40393 -12.27088 -12.11041 -11.98259 -11.88610 -11.84249 -11.52556 -11.37038 -10.96057 -10.71373 -10.30554 -9.53206 -8.90229 -8.66588 -7.83238 -5.19238 -0.43976 -0.11481 1.01427 1.04979 1.46622 1.47357 1.57594 2.00576 2.08307 2.48729 2.52379 3.02265 3.34158 3.41143 3.48242 3.60731 3.70400 3.71866 3.87526 3.88772 3.96522 4.01121 4.17507 4.22266 4.24984 4.40812 4.52850 4.54725 4.55211 4.66416 4.74392 4.86081 4.88632 4.92798 5.00443 5.03714 5.09215 5.14592 5.17313 5.22027 5.24766 5.27844 5.46176 5.51194 5.59293 5.67388 5.74661 6.10730 6.30422 6.70541 7.03838 7.25403 7.71854 8.43019 9.27941 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.002930 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.512713 B = 9553.944631 C =10005.134037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.122 4.122 3 C -0.044 4.044 4 C -0.143 4.143 5 C 0.146 3.854 6 C -0.342 4.342 7 C 0.605 3.395 8 O -0.602 6.602 9 N -0.607 5.607 10 C 0.084 3.916 11 C 0.137 3.863 12 H 0.139 0.861 13 C -0.127 4.127 14 C 0.103 3.897 15 H 0.115 0.885 16 C 0.189 3.811 17 N -0.616 5.616 18 C -0.226 4.226 19 H 0.098 0.902 20 C -0.075 4.075 21 N -0.958 5.958 22 Si 0.977 3.023 23 H -0.257 1.257 24 H -0.302 1.302 25 H -0.296 1.296 26 C 0.113 3.887 27 N -0.338 5.338 28 N -0.266 5.266 29 C 0.114 3.886 30 C -0.112 4.112 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.183 0.817 35 H 0.145 0.855 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.019 0.981 41 H -0.006 1.006 42 H 0.243 0.757 43 H 0.220 0.780 44 H 0.098 0.902 45 H 0.068 0.932 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.460 -4.202 13.032 26.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.126 4.126 3 C -0.067 4.067 4 C -0.163 4.163 5 C 0.024 3.976 6 C -0.356 4.356 7 C 0.398 3.602 8 O -0.486 6.486 9 N -0.338 5.338 10 C -0.040 4.040 11 C 0.031 3.969 12 H 0.156 0.844 13 C -0.166 4.166 14 C 0.000 4.000 15 H 0.133 0.867 16 C 0.063 3.937 17 N -0.340 5.340 18 C -0.355 4.355 19 H 0.116 0.884 20 C -0.267 4.267 21 N -0.608 5.608 22 Si 0.806 3.194 23 H -0.181 1.181 24 H -0.230 1.230 25 H -0.224 1.224 26 C -0.066 4.066 27 N -0.159 5.159 28 N -0.029 5.029 29 C 0.006 3.994 30 C -0.169 4.169 31 H 0.108 0.892 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.201 0.799 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.037 0.963 41 H 0.012 0.988 42 H 0.052 0.948 43 H 0.236 0.764 44 H 0.116 0.884 45 H 0.087 0.913 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -23.141 -4.801 12.813 26.883 hybrid contribution 1.679 0.866 -1.560 2.450 sum -21.461 -3.935 11.253 24.550 Atomic orbital electron populations 1.20912 0.84919 1.05485 1.04363 1.19958 0.99670 0.89650 1.03310 1.21766 0.92188 1.00311 0.92468 1.20905 0.95717 0.95456 1.04202 1.19546 0.91386 0.88472 0.98148 1.19644 0.91520 0.93962 1.30519 1.16803 0.81310 0.86676 0.75382 1.90662 1.85342 1.17011 1.55584 1.48916 1.04135 1.09081 1.71681 1.23475 0.98430 0.81241 1.00868 1.23593 0.90824 0.97742 0.84764 0.84365 1.24089 0.99190 0.95572 0.97768 1.24700 0.82117 0.96384 0.96849 0.86729 1.21962 0.94333 0.86158 0.91279 1.45468 1.65843 1.10398 1.12278 1.19595 1.27166 0.95998 0.92699 0.88424 1.25685 1.03070 0.97488 1.00438 1.70174 1.53163 1.14083 1.23338 0.85013 0.77142 0.78519 0.78702 1.18053 1.22972 1.22369 1.24917 0.96761 0.93070 0.91833 1.77435 0.97822 1.07978 1.32713 1.46224 1.06202 1.05318 1.45159 1.20902 0.77970 1.00425 1.00071 1.21085 1.00273 0.90241 1.05282 0.89170 0.88895 0.88843 0.79927 0.83708 0.88333 0.92703 0.87890 0.89760 0.96285 0.98774 0.94813 0.76393 0.88369 0.91250 0.85640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 9.45 71.23 0.67 0.18 16 2 C -0.12 -1.82 5.84 -20.10 -0.12 -1.94 16 3 C -0.04 -0.78 9.73 22.32 0.22 -0.56 16 4 C -0.14 -3.98 9.73 22.30 0.22 -3.76 16 5 C 0.15 4.88 6.76 39.50 0.27 5.15 16 6 C -0.34 -12.76 6.14 -19.90 -0.12 -12.88 16 7 C 0.61 25.65 7.86 86.41 0.68 26.33 16 8 O -0.60 -28.49 16.05 -4.41 -0.07 -28.56 16 9 N -0.61 -24.10 2.95 -767.67 -2.26 -26.37 16 10 C 0.08 2.85 4.36 87.16 0.38 3.23 16 11 C 0.14 4.86 5.47 46.93 0.26 5.12 16 12 H 0.14 4.03 8.14 -2.39 -0.02 4.01 16 13 C -0.13 -4.12 6.86 33.59 0.23 -3.89 16 14 C 0.10 4.20 5.35 47.95 0.26 4.45 16 15 H 0.11 4.64 8.05 -2.39 -0.02 4.62 16 16 C 0.19 9.79 4.89 88.06 0.43 10.22 16 17 N -0.62 -30.21 3.03 -643.55 -1.95 -32.16 16 18 C -0.23 -12.13 10.37 84.03 0.87 -11.26 16 19 H 0.10 4.82 7.83 -2.91 -0.02 4.79 16 20 C -0.07 -4.26 5.49 84.86 0.47 -3.80 16 21 N -0.96 -59.74 10.56 21.65 0.23 -59.52 16 22 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 23 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 24 H -0.30 -14.63 7.11 99.48 0.71 -13.93 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 26 C 0.11 3.69 10.55 85.42 0.90 4.60 16 27 N -0.34 -10.67 12.18 -56.62 -0.69 -11.36 16 28 N -0.27 -7.77 3.85 -175.57 -0.68 -8.44 16 29 C 0.11 2.29 6.81 41.17 0.28 2.57 16 30 C -0.11 -1.40 9.49 71.24 0.68 -0.72 16 31 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.09 0.16 6.15 -2.38 -0.01 0.15 16 33 H 0.09 0.18 8.05 -2.39 -0.02 0.17 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.15 4.43 7.12 -2.91 -0.02 4.41 16 36 H 0.10 2.53 6.90 -2.38 -0.02 2.52 16 37 H 0.05 2.08 7.19 -2.39 -0.02 2.07 16 38 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 39 H 0.08 2.78 8.14 -2.38 -0.02 2.76 16 40 H 0.02 1.10 7.46 -2.38 -0.02 1.08 16 41 H -0.01 -0.37 7.67 -2.39 -0.02 -0.39 16 42 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 43 H 0.22 6.12 4.51 -2.91 -0.01 6.11 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.07 1.11 7.89 -2.38 -0.02 1.09 16 46 H 0.13 0.64 6.15 -2.39 -0.01 0.62 16 Total: -1.00 -83.28 366.67 4.19 -79.09 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 1.02 Total: 16.11 kcal Atomic # 6 Polarization: 16.47 SS G_CDS: 6.56 Total: 23.04 kcal Atomic # 7 Polarization: -132.50 SS G_CDS: -5.35 Total: -137.85 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.07 Total: -28.56 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -83.28 4.19 -79.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032454452.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.097 kcal (2) G-P(sol) polarization free energy of solvation -83.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds