Wall clock time and date at job start Tue Mar 31 2020 22:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46795 * 239.99468 * 3 2 1 5 5 H 1.48498 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47526 * 119.99679 * 3 2 1 7 7 C 1.38815 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99602 * 159.28983 * 7 2 1 9 9 N 1.36934 * 120.00250 * 339.29301 * 7 2 1 10 10 C 1.50162 * 120.53701 * 332.74375 * 9 7 2 11 11 C 1.46233 * 107.53500 * 109.61116 * 10 9 7 12 12 C 1.52529 * 114.28037 * 58.40725 * 11 10 9 13 13 C 1.50128 * 105.41242 * 270.59319 * 12 11 10 14 14 C 1.54839 * 110.81556 * 97.68178 * 13 12 11 15 15 H 1.09001 * 109.35621 * 81.20287 * 14 13 12 16 16 N 1.46500 * 109.35779 * 200.92961 * 14 13 12 17 17 C 1.34783 * 119.99557 * 205.27799 * 16 14 13 18 18 O 1.21525 * 120.00324 * 359.97438 * 17 16 14 19 19 C 1.47999 * 119.99673 * 179.97438 * 17 16 14 20 20 C 1.38895 * 121.17311 * 0.47524 * 19 17 16 21 21 C 1.39341 * 119.67190 * 179.97438 * 20 19 17 22 22 N 1.31099 * 121.90864 * 0.04927 * 21 20 19 23 23 C 1.33284 * 121.61426 * 359.97110 * 22 21 20 24 24 C 1.40836 * 121.92067 * 180.02562 * 23 22 21 25 25 C 1.36168 * 118.77037 * 179.97438 * 24 23 22 26 26 N 1.32531 * 121.96124 * 0.02562 * 25 24 23 27 27 C 1.31339 * 122.60270 * 359.97438 * 26 25 24 28 28 C 1.40082 * 119.87653 * 0.02562 * 27 26 25 29 29 C 1.43128 * 120.56012 * 152.68810 * 9 7 2 30 30 H 0.96995 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.84570 * 350.09929 * 10 9 7 32 32 H 1.09006 * 109.83984 * 229.11648 * 10 9 7 33 33 H 1.09000 * 108.52177 * 297.16377 * 11 10 9 34 34 H 1.09000 * 108.39978 * 179.55921 * 11 10 9 35 35 H 1.08995 * 110.25259 * 151.61988 * 12 11 10 36 36 H 1.09004 * 110.24633 * 29.56434 * 12 11 10 37 37 H 1.09003 * 109.20766 * 337.33627 * 13 12 11 38 38 H 1.09001 * 109.16736 * 218.00581 * 13 12 11 39 39 H 0.96991 * 120.00104 * 25.27304 * 16 14 13 40 40 H 1.08006 * 120.15853 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.04925 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.61586 * 0.02562 * 24 23 22 43 43 H 1.08008 * 119.01858 * 180.28434 * 25 24 23 44 44 H 1.07996 * 120.06193 * 179.97438 * 27 26 25 45 45 H 1.08999 * 108.12537 * 149.80181 * 29 9 7 46 46 H 1.09007 * 107.99796 * 33.33923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0379 -1.2325 -0.3302 9 7 1.3919 -2.3496 0.4204 10 6 0.2653 -2.2904 1.4113 11 6 -0.9652 -2.6356 0.7005 12 6 -0.9438 -4.0107 0.0409 13 6 -0.3906 -3.7841 -1.3363 14 6 1.1228 -4.1079 -1.3815 15 1 1.2590 -5.1845 -1.4837 16 7 1.7303 -3.4303 -2.5296 17 6 2.8558 -3.9225 -3.0843 18 8 3.3669 -4.9279 -2.6319 19 6 3.4691 -3.2383 -4.2446 20 6 2.9111 -2.0824 -4.7751 21 6 3.5150 -1.4635 -5.8677 22 7 4.6042 -1.9406 -6.4197 23 6 5.1927 -3.0457 -5.9625 24 6 6.3631 -3.5636 -6.5502 25 6 6.9110 -4.6968 -6.0307 26 7 6.3754 -5.3230 -4.9927 27 6 5.2860 -4.8979 -4.3949 28 6 4.6451 -3.7397 -4.8534 29 6 1.8079 -3.6249 -0.0788 30 1 -0.4850 0.8400 -0.0004 31 1 0.1857 -1.2837 1.8215 32 1 0.4414 -3.0055 2.2149 33 1 -1.1425 -1.8849 -0.0696 34 1 -1.7924 -2.6046 1.4097 35 1 -1.9539 -4.4157 -0.0202 36 1 -0.2978 -4.6874 0.6003 37 1 -0.5430 -2.7418 -1.6168 38 1 -0.9161 -4.4262 -2.0432 39 1 1.3225 -2.6277 -2.8905 40 1 2.0135 -1.6653 -4.3427 41 1 3.0727 -0.5648 -6.2719 42 1 6.8181 -3.0707 -7.3965 43 1 7.8113 -5.0949 -6.4754 44 1 4.8845 -5.4408 -3.5521 45 1 1.6255 -4.3686 0.6969 46 1 2.8827 -3.5831 -0.2557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034325897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:20 Heat of formation + Delta-G solvation = 65.443325 kcal Electronic energy + Delta-G solvation = -30178.584858 eV Core-core repulsion = 26262.229012 eV Total energy + Delta-G solvation = -3916.355847 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.39530 -39.50021 -38.06975 -37.75016 -34.47303 -33.64443 -33.20574 -31.60365 -31.19627 -30.72914 -29.68291 -26.33233 -25.57410 -24.28564 -24.19219 -23.37200 -22.72674 -20.83937 -19.82625 -19.33776 -18.53318 -17.95400 -17.24403 -16.72835 -16.05758 -15.76070 -15.32706 -14.98741 -14.89240 -14.75130 -14.59229 -14.29326 -14.04776 -13.86676 -13.41598 -13.29814 -13.08591 -12.83016 -12.45657 -12.30246 -12.07966 -11.86612 -11.65860 -11.41620 -10.90332 -10.84136 -10.66106 -10.57865 -10.29597 -10.20255 -10.11970 -9.82596 -9.75320 -9.51593 -9.42925 -9.31380 -9.21127 -8.81057 -8.58834 -8.44689 -6.77238 -5.92556 -3.33274 -0.11019 0.59019 1.50850 2.77356 3.21353 3.28270 3.33169 3.35440 3.39677 4.00165 4.03990 4.34903 4.39363 4.48007 4.56714 4.62830 4.64870 5.08588 5.19296 5.23519 5.27236 5.37461 5.42538 5.48286 5.56137 5.68445 5.80202 5.82482 5.89320 6.03472 6.10301 6.15290 6.29973 6.35871 6.42175 6.52252 6.58338 6.75579 6.81477 6.88445 6.93904 7.06500 7.17284 7.46132 7.59946 7.64225 7.79174 7.89739 7.91363 8.32796 8.40410 9.07437 9.74163 10.29577 11.12943 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003896 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.366354 B = 7185.375843 C = 8404.966132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.010 3.990 3 Si 0.893 3.107 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.248 4.248 8 H 0.061 0.939 9 N -0.580 5.580 10 C 0.167 3.833 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.111 4.111 14 C 0.114 3.886 15 H 0.077 0.923 16 N -0.681 5.681 17 C 0.553 3.447 18 O -0.540 6.540 19 C -0.037 4.037 20 C -0.143 4.143 21 C 0.152 3.848 22 N -0.470 5.470 23 C 0.152 3.848 24 C -0.153 4.153 25 C 0.090 3.910 26 N -0.493 5.493 27 C 0.164 3.836 28 C -0.134 4.134 29 C 0.151 3.849 30 H 0.254 0.746 31 H 0.079 0.921 32 H 0.008 0.992 33 H 0.107 0.893 34 H 0.024 0.976 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.403 0.597 40 H 0.151 0.849 41 H 0.170 0.830 42 H 0.144 0.856 43 H 0.157 0.843 44 H 0.202 0.798 45 H 0.039 0.961 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.061 -5.518 -9.575 11.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.189 4.189 3 Si 0.723 3.277 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.378 4.378 8 H 0.079 0.921 9 N -0.300 5.300 10 C 0.044 3.956 11 C -0.175 4.175 12 C -0.149 4.149 13 C -0.149 4.149 14 C 0.007 3.993 15 H 0.095 0.905 16 N -0.329 5.329 17 C 0.339 3.661 18 O -0.420 6.420 19 C -0.050 4.050 20 C -0.164 4.164 21 C -0.022 4.022 22 N -0.178 5.178 23 C 0.026 3.974 24 C -0.174 4.174 25 C -0.054 4.054 26 N -0.201 5.201 27 C -0.007 4.007 28 C -0.139 4.139 29 C 0.020 3.980 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.026 0.974 33 H 0.126 0.874 34 H 0.043 0.957 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.058 0.942 39 H 0.239 0.761 40 H 0.169 0.831 41 H 0.188 0.812 42 H 0.162 0.838 43 H 0.175 0.825 44 H 0.218 0.782 45 H 0.057 0.943 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.268 -6.447 -9.727 12.119 hybrid contribution -0.641 1.968 0.038 2.070 sum 2.627 -4.479 -9.689 10.992 Atomic orbital electron populations 1.69917 1.05032 1.25463 1.53393 1.24908 0.95089 0.98069 1.00810 0.86530 0.79145 0.83791 0.78246 1.21078 1.21679 1.21153 1.19052 0.93699 0.85494 1.39511 0.92119 1.44122 1.39548 1.01279 1.45081 1.20089 0.86410 0.99739 0.89397 1.21073 0.98164 0.96223 1.02019 1.20951 0.98932 0.98871 0.96122 1.21685 0.93190 1.02593 0.97400 1.22977 0.93229 0.95741 0.87334 0.90529 1.45954 1.25257 1.29508 1.32153 1.17902 0.81439 0.84280 0.82515 1.90542 1.61834 1.25796 1.63854 1.20499 0.94204 0.95103 0.95242 1.22604 1.01622 0.95009 0.97126 1.23129 0.90040 0.97970 0.91029 1.67854 1.09533 1.10898 1.29539 1.18913 0.95022 0.91338 0.92164 1.21663 0.95415 0.98083 1.02233 1.22370 0.98915 0.91859 0.92265 1.67754 1.11297 1.32348 1.08712 1.24557 0.88336 0.90921 0.96928 1.19684 0.97006 0.99163 0.98076 1.20766 0.96813 0.88684 0.91690 0.93607 0.90263 0.97412 0.87442 0.95717 0.93161 0.92399 0.89901 0.94180 0.76118 0.83122 0.81246 0.83795 0.82535 0.78169 0.94279 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.06 9.60 55.49 0.53 -21.52 16 2 C 0.01 0.25 4.83 -17.43 -0.08 0.16 16 3 Si 0.89 20.05 29.60 -169.99 -5.03 15.02 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.03 9.57 -15.06 -0.14 -6.17 16 8 H 0.06 1.55 7.90 -52.49 -0.41 1.13 16 9 N -0.58 -12.79 2.58 -175.31 -0.45 -13.24 16 10 C 0.17 3.55 5.24 -5.21 -0.03 3.52 16 11 C -0.14 -2.61 5.04 -30.19 -0.15 -2.76 16 12 C -0.11 -1.81 5.76 -28.40 -0.16 -1.97 16 13 C -0.11 -1.80 5.23 -27.19 -0.14 -1.94 16 14 C 0.11 1.94 2.92 -65.96 -0.19 1.75 16 15 H 0.08 1.29 7.57 -51.93 -0.39 0.90 16 16 N -0.68 -10.97 5.04 -52.79 -0.27 -11.23 16 17 C 0.55 9.12 7.63 -12.26 -0.09 9.03 16 18 O -0.54 -9.91 13.24 5.34 0.07 -9.84 16 19 C -0.04 -0.55 5.93 -104.37 -0.62 -1.17 16 20 C -0.14 -1.79 9.61 -38.93 -0.37 -2.16 16 21 C 0.15 1.78 11.14 -17.45 -0.19 1.59 16 22 N -0.47 -6.46 10.33 -10.95 -0.11 -6.57 16 23 C 0.15 2.20 6.63 -84.88 -0.56 1.64 16 24 C -0.15 -1.88 10.08 -39.34 -0.40 -2.28 16 25 C 0.09 1.09 11.06 -17.99 -0.20 0.89 16 26 N -0.49 -7.29 10.31 -13.24 -0.14 -7.43 16 27 C 0.16 2.56 10.53 -17.07 -0.18 2.38 16 28 C -0.13 -2.07 5.76 -106.55 -0.61 -2.68 16 29 C 0.15 2.97 4.76 -4.82 -0.02 2.94 16 30 H 0.25 6.26 8.31 -40.82 -0.34 5.92 16 31 H 0.08 1.89 6.41 -51.93 -0.33 1.56 16 32 H 0.01 0.16 8.12 -51.93 -0.42 -0.27 16 33 H 0.11 2.35 5.00 -51.93 -0.26 2.09 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.94 6.28 -51.93 -0.33 0.61 16 37 H 0.08 1.54 6.59 -51.93 -0.34 1.20 16 38 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.40 6.16 6.59 -40.82 -0.27 5.89 16 40 H 0.15 1.63 6.52 -52.48 -0.34 1.29 16 41 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 42 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 43 H 0.16 1.34 8.06 -52.48 -0.42 0.91 16 44 H 0.20 3.29 5.06 -52.49 -0.27 3.03 16 45 H 0.04 0.73 6.88 -51.93 -0.36 0.38 16 46 H 0.04 0.82 7.84 -51.93 -0.41 0.41 16 LS Contribution 361.40 15.07 5.45 5.45 Total: -1.00 -27.60 361.40 -9.92 -37.51 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -5.80 Total: 9.09 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -4.16 Total: 2.77 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.44 Total: -60.00 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -27.60 -9.92 -37.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034325897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.956 kcal (2) G-P(sol) polarization free energy of solvation -27.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds