Wall clock time and date at job start Tue Mar 31 2020 22:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 119.99980 * 2 1 4 4 H 1.48500 * 109.46795 * 239.99468 * 3 2 1 5 5 H 1.48498 * 109.47379 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47526 * 119.99679 * 3 2 1 7 7 C 1.38815 * 119.99803 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99602 * 159.28983 * 7 2 1 9 9 N 1.36934 * 120.00250 * 339.29301 * 7 2 1 10 10 C 1.50162 * 120.53701 * 332.74375 * 9 7 2 11 11 C 1.46233 * 107.53500 * 109.61116 * 10 9 7 12 12 C 1.52529 * 114.28037 * 58.40725 * 11 10 9 13 13 C 1.50128 * 105.41242 * 270.59319 * 12 11 10 14 14 C 1.54839 * 110.81556 * 97.68178 * 13 12 11 15 15 H 1.09001 * 109.35621 * 81.20287 * 14 13 12 16 16 N 1.46500 * 109.35779 * 200.92961 * 14 13 12 17 17 C 1.34783 * 119.99557 * 205.27799 * 16 14 13 18 18 O 1.21525 * 120.00324 * 359.97438 * 17 16 14 19 19 C 1.47999 * 119.99673 * 179.97438 * 17 16 14 20 20 C 1.38895 * 121.17311 * 0.47524 * 19 17 16 21 21 C 1.39341 * 119.67190 * 179.97438 * 20 19 17 22 22 N 1.31099 * 121.90864 * 0.04927 * 21 20 19 23 23 C 1.33284 * 121.61426 * 359.97110 * 22 21 20 24 24 C 1.40836 * 121.92067 * 180.02562 * 23 22 21 25 25 C 1.36168 * 118.77037 * 179.97438 * 24 23 22 26 26 N 1.32531 * 121.96124 * 0.02562 * 25 24 23 27 27 C 1.31339 * 122.60270 * 359.97438 * 26 25 24 28 28 C 1.40082 * 119.87653 * 0.02562 * 27 26 25 29 29 C 1.43128 * 120.56012 * 152.68810 * 9 7 2 30 30 H 0.96995 * 119.99958 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.84570 * 350.09929 * 10 9 7 32 32 H 1.09006 * 109.83984 * 229.11648 * 10 9 7 33 33 H 1.09000 * 108.52177 * 297.16377 * 11 10 9 34 34 H 1.09000 * 108.39978 * 179.55921 * 11 10 9 35 35 H 1.08995 * 110.25259 * 151.61988 * 12 11 10 36 36 H 1.09004 * 110.24633 * 29.56434 * 12 11 10 37 37 H 1.09003 * 109.20766 * 337.33627 * 13 12 11 38 38 H 1.09001 * 109.16736 * 218.00581 * 13 12 11 39 39 H 0.96991 * 120.00104 * 25.27304 * 16 14 13 40 40 H 1.08006 * 120.15853 * 359.97438 * 20 19 17 41 41 H 1.08002 * 119.04925 * 180.02562 * 21 20 19 42 42 H 1.07999 * 120.61586 * 0.02562 * 24 23 22 43 43 H 1.08008 * 119.01858 * 180.28434 * 25 24 23 44 44 H 1.07996 * 120.06193 * 179.97438 * 27 26 25 45 45 H 1.08999 * 108.12537 * 149.80181 * 29 9 7 46 46 H 1.09007 * 107.99796 * 33.33923 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0379 -1.2325 -0.3302 9 7 1.3919 -2.3496 0.4204 10 6 0.2653 -2.2904 1.4113 11 6 -0.9652 -2.6356 0.7005 12 6 -0.9438 -4.0107 0.0409 13 6 -0.3906 -3.7841 -1.3363 14 6 1.1228 -4.1079 -1.3815 15 1 1.2590 -5.1845 -1.4837 16 7 1.7303 -3.4303 -2.5296 17 6 2.8558 -3.9225 -3.0843 18 8 3.3669 -4.9279 -2.6319 19 6 3.4691 -3.2383 -4.2446 20 6 2.9111 -2.0824 -4.7751 21 6 3.5150 -1.4635 -5.8677 22 7 4.6042 -1.9406 -6.4197 23 6 5.1927 -3.0457 -5.9625 24 6 6.3631 -3.5636 -6.5502 25 6 6.9110 -4.6968 -6.0307 26 7 6.3754 -5.3230 -4.9927 27 6 5.2860 -4.8979 -4.3949 28 6 4.6451 -3.7397 -4.8534 29 6 1.8079 -3.6249 -0.0788 30 1 -0.4850 0.8400 -0.0004 31 1 0.1857 -1.2837 1.8215 32 1 0.4414 -3.0055 2.2149 33 1 -1.1425 -1.8849 -0.0696 34 1 -1.7924 -2.6046 1.4097 35 1 -1.9539 -4.4157 -0.0202 36 1 -0.2978 -4.6874 0.6003 37 1 -0.5430 -2.7418 -1.6168 38 1 -0.9161 -4.4262 -2.0432 39 1 1.3225 -2.6277 -2.8905 40 1 2.0135 -1.6653 -4.3427 41 1 3.0727 -0.5648 -6.2719 42 1 6.8181 -3.0707 -7.3965 43 1 7.8113 -5.0949 -6.4754 44 1 4.8845 -5.4408 -3.5521 45 1 1.6255 -4.3686 0.6969 46 1 2.8827 -3.5831 -0.2557 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034325897.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:20 Heat of formation + Delta-G solvation = 49.544154 kcal Electronic energy + Delta-G solvation = -30179.274298 eV Core-core repulsion = 26262.229012 eV Total energy + Delta-G solvation = -3917.045287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.46725 -40.81242 -39.31909 -39.02886 -35.95587 -34.91258 -34.60041 -32.89531 -32.63911 -32.01321 -30.97265 -27.96925 -26.81696 -25.60027 -25.23674 -24.85752 -24.08726 -22.14766 -21.28486 -20.79418 -19.59638 -19.09138 -18.54688 -18.30527 -17.21409 -17.07848 -16.83763 -16.36589 -16.23493 -15.88026 -15.73590 -15.61430 -15.37951 -15.25925 -14.91868 -14.55951 -14.13948 -14.02384 -13.87765 -13.77698 -13.40475 -13.24830 -13.18113 -13.03027 -12.65746 -12.36234 -12.30103 -11.92480 -11.83026 -11.71184 -11.45985 -11.27836 -11.07584 -10.88764 -10.87496 -10.47365 -10.46092 -10.35326 -10.07587 -9.58652 -8.54467 -7.79134 -5.21512 -1.17821 -0.42916 0.42377 1.46102 1.52744 1.56426 1.68180 2.00908 2.12902 2.54868 2.96849 3.06997 3.31737 3.33653 3.43077 3.45813 3.59510 3.63545 3.64368 3.98518 4.17082 4.20155 4.24704 4.34167 4.44438 4.54067 4.56353 4.63284 4.68942 4.70503 4.81622 4.84686 4.90610 4.94055 5.09629 5.25204 5.27585 5.32149 5.36867 5.46866 5.56775 5.63067 5.69449 5.73415 5.80857 6.26891 6.44961 6.52486 6.58470 6.84256 7.11992 7.22950 7.93560 8.46450 9.22765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012562 B = 0.003896 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2228.366354 B = 7185.375843 C = 8404.966132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.018 4.018 3 Si 0.937 3.063 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.296 1.296 7 C -0.252 4.252 8 H 0.043 0.957 9 N -0.589 5.589 10 C 0.169 3.831 11 C -0.128 4.128 12 C -0.104 4.104 13 C -0.100 4.100 14 C 0.123 3.877 15 H 0.082 0.918 16 N -0.679 5.679 17 C 0.553 3.447 18 O -0.564 6.564 19 C -0.060 4.060 20 C -0.129 4.129 21 C 0.156 3.844 22 N -0.476 5.476 23 C 0.133 3.867 24 C -0.145 4.145 25 C 0.086 3.914 26 N -0.507 5.507 27 C 0.142 3.858 28 C -0.149 4.149 29 C 0.154 3.846 30 H 0.249 0.751 31 H 0.048 0.952 32 H 0.019 0.981 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.407 0.593 40 H 0.168 0.832 41 H 0.211 0.789 42 H 0.173 0.827 43 H 0.195 0.805 44 H 0.185 0.815 45 H 0.048 0.952 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.789 -5.352 -11.323 12.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.216 4.216 3 Si 0.768 3.232 4 H -0.207 1.207 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.383 4.383 8 H 0.061 0.939 9 N -0.311 5.311 10 C 0.046 3.954 11 C -0.167 4.167 12 C -0.141 4.141 13 C -0.138 4.138 14 C 0.016 3.984 15 H 0.100 0.900 16 N -0.327 5.327 17 C 0.340 3.660 18 O -0.445 6.445 19 C -0.074 4.074 20 C -0.150 4.150 21 C -0.018 4.018 22 N -0.185 5.185 23 C 0.007 3.993 24 C -0.165 4.165 25 C -0.059 4.059 26 N -0.215 5.215 27 C -0.028 4.028 28 C -0.154 4.154 29 C 0.025 3.975 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.244 0.756 40 H 0.186 0.814 41 H 0.228 0.772 42 H 0.190 0.810 43 H 0.212 0.788 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 2.994 -6.299 -11.484 13.435 hybrid contribution -0.484 1.924 0.568 2.064 sum 2.510 -4.375 -10.915 12.024 Atomic orbital electron populations 1.70029 1.05369 1.25272 1.53801 1.25264 0.95632 0.99487 1.01170 0.85838 0.78071 0.81689 0.77625 1.20702 1.21846 1.22364 1.18967 0.93051 0.86667 1.39580 0.93919 1.44138 1.39884 1.01379 1.45675 1.20041 0.87287 0.98312 0.89757 1.20900 0.97157 0.97342 1.01304 1.20922 1.00570 0.97078 0.95576 1.21569 0.92452 1.01695 0.98116 1.22751 0.93669 0.95894 0.86128 0.89987 1.45886 1.25287 1.29658 1.31910 1.18186 0.81103 0.83967 0.82748 1.90535 1.62388 1.26904 1.64699 1.20413 0.94989 0.96462 0.95495 1.22889 1.01632 0.93699 0.96758 1.23794 0.89202 0.98625 0.90167 1.67942 1.10179 1.10608 1.29724 1.19260 0.95995 0.91817 0.92246 1.22023 0.94368 0.97746 1.02374 1.22950 0.99772 0.91772 0.91383 1.67724 1.11082 1.33066 1.09641 1.24294 0.89396 0.91697 0.97430 1.19762 0.97397 0.99380 0.98824 1.20730 0.95456 0.87969 0.93389 0.94127 0.93343 0.96263 0.89963 0.94840 0.90588 0.92023 0.92113 0.91636 0.75619 0.81429 0.77236 0.80982 0.78846 0.79841 0.93422 0.97013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -44.63 9.60 21.65 0.21 -44.43 16 2 C -0.02 -0.86 4.83 84.86 0.41 -0.45 16 3 Si 0.94 41.33 29.60 68.60 2.03 43.36 16 4 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 7 C -0.25 -12.46 9.57 84.03 0.80 -11.65 16 8 H 0.04 2.24 7.90 -2.91 -0.02 2.22 16 9 N -0.59 -26.23 2.58 -708.56 -1.83 -28.06 16 10 C 0.17 7.19 5.24 83.58 0.44 7.63 16 11 C -0.13 -4.80 5.04 28.35 0.14 -4.66 16 12 C -0.10 -3.15 5.76 29.51 0.17 -2.98 16 13 C -0.10 -3.09 5.23 30.30 0.16 -2.93 16 14 C 0.12 4.10 2.92 46.27 0.14 4.24 16 15 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 16 N -0.68 -21.81 5.04 -439.21 -2.22 -24.03 16 17 C 0.55 18.58 7.63 86.83 0.66 19.24 16 18 O -0.56 -21.47 13.24 -3.79 -0.05 -21.52 16 19 C -0.06 -1.81 5.93 -19.70 -0.12 -1.92 16 20 C -0.13 -3.05 9.61 22.69 0.22 -2.83 16 21 C 0.16 3.27 11.14 85.07 0.95 4.21 16 22 N -0.48 -12.06 10.33 -188.56 -1.95 -14.01 16 23 C 0.13 3.68 6.63 40.45 0.27 3.94 16 24 C -0.15 -3.26 10.08 22.42 0.23 -3.04 16 25 C 0.09 1.93 11.06 84.11 0.93 2.86 16 26 N -0.51 -14.95 10.31 -195.81 -2.02 -16.97 16 27 C 0.14 4.60 10.53 85.21 0.90 5.50 16 28 C -0.15 -4.60 5.76 -21.11 -0.12 -4.72 16 29 C 0.15 6.09 4.76 87.65 0.42 6.51 16 30 H 0.25 12.31 8.31 -92.71 -0.77 11.54 16 31 H 0.05 2.35 6.41 -2.39 -0.02 2.33 16 32 H 0.02 0.76 8.12 -2.38 -0.02 0.74 16 33 H 0.08 3.57 5.00 -2.39 -0.01 3.56 16 34 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 36 H 0.06 1.85 6.28 -2.39 -0.01 1.83 16 37 H 0.06 2.19 6.59 -2.39 -0.02 2.18 16 38 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.41 12.25 6.59 -92.71 -0.61 11.64 16 40 H 0.17 3.31 6.52 -2.91 -0.02 3.29 16 41 H 0.21 2.58 8.06 -2.91 -0.02 2.55 16 42 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 43 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 44 H 0.19 6.46 5.06 -2.91 -0.01 6.44 16 45 H 0.05 1.77 6.88 -2.39 -0.02 1.76 16 46 H 0.01 0.52 7.84 -2.38 -0.02 0.50 16 Total: -1.00 -60.83 361.40 1.19 -59.64 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: 0.42 Total: 27.07 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 6.59 Total: 18.94 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -7.80 Total: -127.49 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.36 kcal Total: -60.83 1.19 -59.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034325897.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.183 kcal (2) G-P(sol) polarization free energy of solvation -60.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds