Wall clock time and date at job start Tue Mar 31 2020 22:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86795 * 120.00233 * 2 1 4 4 H 1.48497 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.46704 * 299.99902 * 3 2 1 6 6 H 1.48501 * 109.47198 * 59.99562 * 3 2 1 7 7 C 1.38816 * 119.99949 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00164 * 195.68819 * 7 2 1 9 9 N 1.36933 * 119.99981 * 15.68584 * 7 2 1 10 10 C 1.47607 * 118.64337 * 26.49921 * 9 7 2 11 11 C 1.53950 * 112.14093 * 137.86707 * 10 9 7 12 12 C 1.50878 * 110.09348 * 319.43881 * 11 10 9 13 13 C 1.52570 * 109.35861 * 91.89095 * 12 11 10 14 14 C 1.47101 * 114.32389 * 274.98339 * 13 12 11 15 15 H 1.08997 * 109.32332 * 302.70600 * 14 13 12 16 16 N 1.46500 * 109.32420 * 183.05960 * 14 13 12 17 17 C 1.34782 * 119.99919 * 154.65402 * 16 14 13 18 18 O 1.21486 * 119.99821 * 359.97438 * 17 16 14 19 19 C 1.48372 * 120.00317 * 179.97438 * 17 16 14 20 20 C 1.40212 * 119.22035 * 179.97438 * 19 17 16 21 21 C 1.36637 * 119.90517 * 180.02562 * 20 19 17 22 22 C 1.40561 * 118.10987 * 0.02562 * 21 20 19 23 23 C 1.40405 * 122.06480 * 180.02562 * 22 21 20 24 24 N 1.31244 * 119.87600 * 179.97438 * 23 22 21 25 25 C 1.32599 * 122.68452 * 359.97438 * 24 23 22 26 26 C 1.36098 * 121.99067 * 0.25903 * 25 24 23 27 27 C 1.40948 * 118.77178 * 359.50334 * 26 25 24 28 28 N 1.31986 * 119.21880 * 359.97438 * 19 17 16 29 29 C 1.44662 * 118.81320 * 206.51038 * 9 7 2 30 30 H 0.97000 * 120.00347 * 0.02562 * 1 2 3 31 31 H 1.08994 * 108.94859 * 17.18547 * 10 9 7 32 32 H 1.08998 * 108.94850 * 258.55118 * 10 9 7 33 33 H 1.08997 * 109.36988 * 199.24150 * 11 10 9 34 34 H 1.09010 * 109.26203 * 79.56308 * 11 10 9 35 35 H 1.09003 * 109.49456 * 331.92280 * 12 11 10 36 36 H 1.09006 * 109.49126 * 211.85272 * 12 11 10 37 37 H 1.08995 * 108.51609 * 153.72596 * 13 12 11 38 38 H 1.08997 * 108.39025 * 36.14544 * 13 12 11 39 39 H 0.97002 * 120.00479 * 334.64455 * 16 14 13 40 40 H 1.07993 * 120.04767 * 0.04749 * 20 19 17 41 41 H 1.07999 * 120.94706 * 180.02562 * 21 20 19 42 42 H 1.08000 * 120.05733 * 359.97438 * 23 22 21 43 43 H 1.07997 * 119.00021 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.61653 * 179.71872 * 26 25 24 45 45 H 1.09010 * 109.61631 * 150.83345 * 29 9 7 46 46 H 1.08994 * 109.32479 * 30.89008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0600 -1.2195 0.2534 9 7 1.3638 -2.3661 -0.3196 10 6 0.1798 -2.2993 -1.1985 11 6 0.1721 -3.4254 -2.2482 12 6 1.5635 -3.6364 -2.7921 13 6 2.2714 -4.7078 -1.9683 14 6 2.9230 -4.2031 -0.7498 15 1 3.6395 -3.4270 -1.0190 16 7 3.6265 -5.3029 -0.0852 17 6 4.6793 -5.0434 0.7154 18 8 5.0452 -3.8975 0.8853 19 6 5.3914 -6.1572 1.3890 20 6 6.4849 -5.8686 2.2178 21 6 7.1512 -6.8835 2.8446 22 6 6.7068 -8.1996 2.6297 23 6 7.3295 -9.3043 3.2322 24 7 6.8784 -10.5151 3.0019 25 6 5.8407 -10.7544 2.2119 26 6 5.1715 -9.7533 1.5776 27 6 5.5918 -8.4230 1.7780 28 7 4.9805 -7.3962 1.1939 29 6 1.8662 -3.6126 0.2158 30 1 -0.4851 0.8400 -0.0004 31 1 0.1735 -1.3375 -1.7112 32 1 -0.7194 -2.3787 -0.5876 33 1 -0.4978 -3.1544 -3.0641 34 1 -0.1783 -4.3473 -1.7839 35 1 2.1229 -2.7029 -2.7324 36 1 1.5026 -3.9584 -3.8318 37 1 3.0274 -5.1822 -2.5939 38 1 1.5382 -5.4616 -1.6817 39 1 3.3345 -6.2179 -0.2211 40 1 6.7998 -4.8455 2.3608 41 1 7.9953 -6.6803 3.4870 42 1 8.1782 -9.1580 3.8839 43 1 5.5197 -11.7748 2.0637 44 1 4.3317 -9.9739 0.9353 45 1 1.0442 -4.3194 0.3304 46 1 2.3246 -3.4291 1.1874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034416957.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:24 Heat of formation + Delta-G solvation = 56.908041 kcal Electronic energy + Delta-G solvation = -29073.094768 eV Core-core repulsion = 25156.368803 eV Total energy + Delta-G solvation = -3916.725965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60017 -39.82030 -38.31537 -37.41861 -34.70394 -34.03344 -33.21553 -32.09482 -30.89618 -30.80101 -29.97161 -26.38341 -25.71817 -24.62269 -24.10706 -23.12116 -22.96964 -20.93233 -20.18919 -19.17199 -18.91231 -18.16350 -17.58506 -16.58707 -16.30391 -15.95862 -15.45895 -15.23466 -14.95749 -14.79773 -14.53743 -14.34491 -14.20898 -13.68554 -13.56101 -13.33646 -13.14745 -12.88952 -12.70059 -12.54529 -12.50892 -12.09957 -11.55170 -11.11050 -11.04817 -10.93279 -10.78651 -10.54115 -10.39495 -10.13988 -10.11862 -10.07300 -9.72396 -9.65187 -9.64816 -9.60232 -9.55873 -8.91929 -8.83607 -8.31098 -6.62360 -5.73018 -3.16369 -0.31432 0.19965 1.44067 2.25238 3.10285 3.19187 3.41860 3.49942 3.54786 3.69233 3.77448 3.92394 4.08932 4.27832 4.35030 4.52069 4.59454 4.82982 4.93916 5.17798 5.25524 5.27876 5.35594 5.36995 5.46622 5.53172 5.54359 5.66217 5.76862 5.94724 5.99411 6.03604 6.16418 6.19726 6.30892 6.39921 6.60500 6.62853 6.68071 6.73621 6.83454 6.93598 7.09176 7.21948 7.47087 7.47257 7.74738 7.75754 7.93859 8.36195 8.53229 9.29806 9.94785 10.38997 11.34666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017471 B = 0.002671 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.243190 B =10479.397650 C =11618.947545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.004 3.996 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.583 5.583 10 C 0.176 3.824 11 C -0.144 4.144 12 C -0.100 4.100 13 C -0.113 4.113 14 C 0.112 3.888 15 H 0.091 0.909 16 N -0.697 5.697 17 C 0.557 3.443 18 O -0.514 6.514 19 C 0.150 3.850 20 C -0.129 4.129 21 C -0.039 4.039 22 C -0.157 4.157 23 C 0.160 3.840 24 N -0.486 5.486 25 C 0.086 3.914 26 C -0.135 4.135 27 C 0.153 3.847 28 N -0.451 5.451 29 C 0.158 3.842 30 H 0.252 0.748 31 H 0.076 0.924 32 H 0.025 0.975 33 H 0.053 0.947 34 H 0.045 0.955 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.403 0.597 40 H 0.158 0.842 41 H 0.153 0.847 42 H 0.169 0.831 43 H 0.161 0.839 44 H 0.149 0.851 45 H 0.033 0.967 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.417 -19.959 1.884 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.304 5.304 10 C 0.051 3.949 11 C -0.183 4.183 12 C -0.138 4.138 13 C -0.151 4.151 14 C 0.006 3.994 15 H 0.109 0.891 16 N -0.347 5.347 17 C 0.339 3.661 18 O -0.388 6.388 19 C -0.005 4.005 20 C -0.150 4.150 21 C -0.067 4.067 22 C -0.162 4.162 23 C -0.014 4.014 24 N -0.194 5.194 25 C -0.057 4.057 26 C -0.155 4.155 27 C 0.024 3.976 28 N -0.163 5.163 29 C 0.028 3.972 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.238 0.762 40 H 0.175 0.825 41 H 0.171 0.829 42 H 0.186 0.814 43 H 0.178 0.822 44 H 0.167 0.833 45 H 0.051 0.949 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 11.076 -20.028 1.759 22.954 hybrid contribution 0.482 1.228 0.057 1.320 sum 11.558 -18.800 1.815 22.144 Atomic orbital electron populations 1.70088 1.05202 1.25230 1.54547 1.25022 0.95256 0.98347 1.00825 0.86254 0.79645 0.84014 0.77145 1.20089 1.21659 1.21815 1.19354 0.92725 0.84680 1.41630 0.91186 1.43619 1.32141 1.01490 1.53135 1.21063 0.88431 0.95829 0.89611 1.22085 0.95890 1.00659 0.99645 1.20826 0.97055 0.99373 0.96559 1.20579 0.99329 0.99016 0.96139 1.21391 0.96150 0.87903 0.93999 0.89134 1.46061 1.30452 1.11482 1.46725 1.17844 0.80994 0.87078 0.80145 1.90866 1.66005 1.20272 1.61659 1.21843 0.93346 0.91203 0.94099 1.21908 0.94955 1.02196 0.95942 1.21464 0.98329 0.90478 0.96400 1.19955 0.98758 0.96425 1.01025 1.23252 0.97045 0.86353 0.94705 1.67494 1.12698 1.24083 1.15117 1.22269 0.91129 0.99920 0.92427 1.21801 1.01845 0.90427 1.01435 1.18896 0.91842 0.93503 0.93317 1.67902 1.28499 0.98600 1.21249 1.20923 0.93390 0.88540 0.94374 0.93832 0.90608 0.95727 0.92875 0.93664 0.90429 0.93341 0.93323 0.92691 0.76241 0.82451 0.82919 0.81432 0.82200 0.83346 0.94882 0.93327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.34 11.01 55.49 0.61 -25.73 16 2 C 0.00 0.10 4.87 -17.43 -0.08 0.02 16 3 Si 0.90 22.22 29.58 -169.99 -5.03 17.20 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.25 -7.05 9.45 -15.06 -0.14 -7.19 16 8 H 0.07 2.00 7.88 -52.49 -0.41 1.59 16 9 N -0.58 -14.42 2.27 -172.03 -0.39 -14.81 16 10 C 0.18 4.13 4.66 -2.94 -0.01 4.11 16 11 C -0.14 -2.62 5.70 -27.30 -0.16 -2.78 16 12 C -0.10 -1.69 5.51 -28.02 -0.15 -1.85 16 13 C -0.11 -1.76 4.55 -29.78 -0.14 -1.89 16 14 C 0.11 2.01 2.34 -69.78 -0.16 1.85 16 15 H 0.09 1.92 7.57 -51.93 -0.39 1.53 16 16 N -0.70 -10.76 5.04 -56.40 -0.28 -11.04 16 17 C 0.56 9.12 7.77 -12.09 -0.09 9.03 16 18 O -0.51 -10.28 15.94 5.38 0.09 -10.19 16 19 C 0.15 2.01 6.75 -82.89 -0.56 1.45 16 20 C -0.13 -1.42 9.54 -39.42 -0.38 -1.80 16 21 C -0.04 -0.32 9.92 -39.28 -0.39 -0.71 16 22 C -0.16 -1.47 5.75 -106.74 -0.61 -2.09 16 23 C 0.16 1.25 11.05 -16.99 -0.19 1.06 16 24 N -0.49 -4.44 10.30 -13.18 -0.14 -4.58 16 25 C 0.09 0.69 11.05 -17.99 -0.20 0.49 16 26 C -0.13 -1.20 10.08 -39.33 -0.40 -1.60 16 27 C 0.15 1.68 6.63 -84.86 -0.56 1.12 16 28 N -0.45 -5.64 9.50 -7.49 -0.07 -5.71 16 29 C 0.16 3.37 5.24 -4.05 -0.02 3.35 16 30 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 31 H 0.08 1.99 6.33 -51.93 -0.33 1.66 16 32 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.04 0.77 7.31 -51.92 -0.38 0.39 16 35 H 0.08 1.53 7.48 -51.93 -0.39 1.15 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.05 0.79 7.34 -51.93 -0.38 0.41 16 39 H 0.40 5.30 7.88 -40.82 -0.32 4.98 16 40 H 0.16 1.66 7.60 -52.49 -0.40 1.27 16 41 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.17 0.73 8.06 -52.49 -0.42 0.30 16 43 H 0.16 0.83 8.06 -52.49 -0.42 0.40 16 44 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.03 0.67 8.06 -51.92 -0.42 0.25 16 46 H 0.05 1.14 7.97 -51.93 -0.41 0.73 16 LS Contribution 374.25 15.07 5.64 5.64 Total: -1.00 -32.89 374.25 -10.17 -43.06 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -6.35 Total: 3.57 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -4.25 Total: 2.59 kcal Atomic # 7 Polarization: -61.60 SS G_CDS: -0.27 Total: -61.87 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.89 -10.17 -43.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034416957.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.972 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds