Wall clock time and date at job start Tue Mar 31 2020 22:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99864 * 2 1 4 4 H 1.48499 * 109.46901 * 270.00022 * 3 2 1 5 5 H 1.48502 * 109.47017 * 30.00109 * 3 2 1 6 6 H 1.48503 * 109.46644 * 150.00045 * 3 2 1 7 7 C 1.38809 * 119.99862 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99727 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00357 * 359.97438 * 7 2 1 10 10 C 1.47662 * 134.45923 * 180.02562 * 9 7 2 11 11 C 1.53515 * 85.98165 * 204.29658 * 10 9 7 12 12 C 1.47675 * 134.45573 * 359.97438 * 9 7 2 13 13 C 1.52672 * 113.57149 * 91.01587 * 11 10 9 14 14 C 1.53332 * 109.11218 * 73.81412 * 13 11 10 15 15 N 1.46884 * 108.76119 * 52.40814 * 14 13 11 16 16 C 1.34779 * 120.46798 * 124.47408 * 15 14 13 17 17 O 1.21533 * 119.99574 * 359.91386 * 16 15 14 18 18 C 1.48055 * 120.00179 * 179.97438 * 16 15 14 19 19 C 1.39765 * 119.46997 * 156.72564 * 18 16 15 20 20 C 1.38141 * 119.57203 * 180.23191 * 19 18 16 21 21 C 1.39256 * 118.37770 * 359.49875 * 20 19 18 22 22 N 1.37345 * 133.61096 * 180.11940 * 21 20 19 23 23 H 0.96992 * 125.05485 * 0.36571 * 22 21 20 24 24 C 1.36719 * 109.89483 * 180.34350 * 22 21 20 25 25 C 1.34286 * 110.02480 * 0.02562 * 24 22 21 26 26 C 1.41192 * 119.09577 * 0.49489 * 21 20 19 27 27 N 1.32443 * 119.46897 * 336.69463 * 18 16 15 28 28 C 1.46881 * 119.06785 * 304.73965 * 15 14 13 29 29 C 1.52668 * 113.56650 * 222.23175 * 11 10 9 30 30 H 0.97001 * 120.00112 * 359.97438 * 1 2 3 31 31 H 1.09004 * 113.79268 * 90.03537 * 10 9 7 32 32 H 1.09005 * 113.79459 * 318.56624 * 10 9 7 33 33 H 1.08998 * 113.79013 * 41.43094 * 12 9 7 34 34 H 1.08998 * 113.79141 * 269.96566 * 12 9 7 35 35 H 1.09003 * 109.53290 * 313.92682 * 13 11 10 36 36 H 1.08998 * 109.53313 * 193.71041 * 13 11 10 37 37 H 1.09005 * 109.59332 * 292.62311 * 14 13 11 38 38 H 1.09007 * 109.59092 * 172.18962 * 14 13 11 39 39 H 1.08000 * 120.21483 * 359.94674 * 19 18 16 40 40 H 1.08003 * 120.80848 * 179.74532 * 20 19 18 41 41 H 1.07996 * 124.99311 * 179.97438 * 24 22 21 42 42 H 1.08005 * 126.48704 * 180.02562 * 25 24 22 43 43 H 1.09005 * 109.59068 * 175.04184 * 28 15 14 44 44 H 1.09001 * 109.59272 * 295.48276 * 28 15 14 45 45 H 1.09001 * 109.52682 * 46.07685 * 29 11 10 46 46 H 1.08998 * 109.52753 * 166.22097 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 1.7212 -3.8107 -0.0005 11 6 0.3477 -4.0810 -0.6306 12 6 -0.1044 -2.7567 0.0004 13 6 0.3612 -4.0585 -2.1571 14 6 1.0379 -5.3345 -2.6720 15 7 0.3921 -6.4967 -2.0478 16 6 -0.1302 -7.4789 -2.8087 17 8 -0.0700 -7.4060 -4.0203 18 6 -0.7784 -8.6460 -2.1686 19 6 -1.7190 -9.3897 -2.8866 20 6 -2.3286 -10.4762 -2.2897 21 6 -1.9716 -10.8003 -0.9833 22 7 -2.3637 -11.7859 -0.1109 23 1 -3.0162 -12.4763 -0.3070 24 6 -1.6973 -11.6496 1.0751 25 6 -0.8679 -10.5950 1.0179 26 6 -1.0137 -10.0061 -0.3162 27 7 -0.4570 -8.9689 -0.9249 28 6 0.3181 -6.5705 -0.5827 29 6 -0.3580 -5.3057 -0.0538 30 1 -0.4850 0.8400 0.0004 31 1 1.8385 -4.2345 0.9969 32 1 2.5595 -4.0340 -0.6606 33 1 -0.7174 -2.1421 -0.6588 34 1 -0.5293 -2.8675 0.9980 35 1 0.9158 -3.1866 -2.5039 36 1 -0.6620 -4.0128 -2.5300 37 1 2.0956 -5.3190 -2.4089 38 1 0.9295 -5.3941 -3.7551 39 1 -1.9710 -9.1140 -3.8999 40 1 -3.0612 -11.0623 -2.8247 41 1 -1.8204 -12.2948 1.9324 42 1 -0.2160 -10.2473 1.8057 43 1 -0.2643 -7.4441 -0.2897 44 1 1.3240 -6.6437 -0.1692 45 1 -0.2941 -5.2844 1.0341 46 1 -1.4048 -5.2997 -0.3575 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035747751.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:57 Heat of formation + Delta-G solvation = 91.327123 kcal Electronic energy + Delta-G solvation = -29459.164191 eV Core-core repulsion = 25543.930749 eV Total energy + Delta-G solvation = -3915.233441 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62300 -41.52836 -40.23897 -38.48058 -37.12091 -34.45722 -33.91078 -32.42693 -32.05453 -30.85876 -30.41133 -28.65873 -26.77606 -25.99513 -24.72056 -24.45714 -23.52852 -22.82950 -21.86235 -20.90828 -19.48108 -19.00350 -18.68296 -17.97273 -17.79903 -17.06931 -16.79825 -16.52471 -16.10744 -15.81058 -15.68276 -15.58197 -15.36916 -15.14695 -14.56457 -14.42145 -14.10265 -14.03774 -13.94225 -13.81405 -13.70460 -13.41291 -13.21936 -12.93219 -12.85885 -12.78695 -12.63455 -12.17846 -12.10732 -11.64581 -11.54851 -11.41667 -11.33646 -11.19248 -11.01616 -10.80594 -9.93868 -9.68794 -9.38493 -9.03366 -8.86245 -7.87126 -5.19592 -0.23709 0.05119 1.44577 1.46964 1.55157 1.66752 1.77068 1.94174 2.12462 2.49029 2.82664 3.02065 3.32889 3.44314 3.56038 3.64612 3.70416 3.96984 4.01556 4.05007 4.08419 4.21377 4.36173 4.41403 4.49002 4.58791 4.67748 4.70286 4.71730 4.78366 4.88798 4.92148 4.98309 5.03171 5.04701 5.14335 5.18439 5.22660 5.29595 5.35555 5.44137 5.47487 5.60386 5.62944 5.77595 5.93793 5.97753 6.38763 6.61090 6.74377 6.95406 7.10592 7.64331 8.62304 9.29699 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022468 B = 0.002536 C = 0.002381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.892985 B =11038.090284 C =11754.773166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.295 1.295 6 H -0.269 1.269 7 C -0.230 4.230 8 H 0.081 0.919 9 N -0.637 5.637 10 C 0.131 3.869 11 C -0.084 4.084 12 C 0.170 3.830 13 C -0.087 4.087 14 C 0.120 3.880 15 N -0.585 5.585 16 C 0.568 3.432 17 O -0.576 6.576 18 C 0.052 3.948 19 C -0.113 4.113 20 C -0.076 4.076 21 C 0.060 3.940 22 N -0.573 5.573 23 H 0.439 0.561 24 C 0.101 3.899 25 C -0.218 4.218 26 C 0.056 3.944 27 N -0.427 5.427 28 C 0.088 3.912 29 C -0.110 4.110 30 H 0.246 0.754 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.085 0.915 39 H 0.152 0.848 40 H 0.176 0.824 41 H 0.228 0.772 42 H 0.165 0.835 43 H 0.148 0.852 44 H 0.071 0.929 45 H 0.083 0.917 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.549 -31.413 1.399 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.194 1.194 7 C -0.358 4.358 8 H 0.099 0.901 9 N -0.363 5.363 10 C 0.006 3.994 11 C -0.085 4.085 12 C 0.044 3.956 13 C -0.125 4.125 14 C -0.002 4.002 15 N -0.315 5.315 16 C 0.356 3.644 17 O -0.456 6.456 18 C -0.093 4.093 19 C -0.135 4.135 20 C -0.104 4.104 21 C -0.052 4.052 22 N -0.178 5.178 23 H 0.280 0.720 24 C -0.028 4.028 25 C -0.243 4.243 26 C -0.080 4.080 27 N -0.139 5.139 28 C -0.033 4.033 29 C -0.149 4.149 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.169 0.831 40 H 0.194 0.806 41 H 0.244 0.756 42 H 0.182 0.818 43 H 0.164 0.836 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.894 -30.649 1.261 31.440 hybrid contribution -0.364 1.162 -0.420 1.288 sum -7.257 -29.487 0.841 30.379 Atomic orbital electron populations 1.70025 1.06424 1.25365 1.58570 1.25599 0.96526 1.00763 1.03360 0.85101 0.77641 0.79286 0.77449 1.21356 1.22154 1.19396 1.19415 0.90742 0.83532 1.42145 0.90074 1.46323 1.03457 1.00505 1.86060 1.22731 0.95600 0.83599 0.97426 1.22136 0.96638 0.94658 0.95111 1.22157 0.86966 0.90771 0.95661 1.21338 1.00390 0.96925 0.93876 1.21578 0.96529 0.83593 0.98484 1.48035 1.55188 1.19912 1.08331 1.18272 0.77727 0.82503 0.85868 1.90722 1.60710 1.79702 1.14503 1.20688 0.99853 0.97610 0.91183 1.21759 0.95591 0.94822 1.01369 1.20740 1.00956 0.97245 0.91505 1.19346 0.98919 0.93289 0.93690 1.41721 1.38481 1.26432 1.11131 0.71988 1.22696 0.92245 0.98171 0.89654 1.21923 1.07608 0.99828 0.94929 1.20796 0.96877 0.93145 0.97155 1.66766 1.24828 1.14339 1.07996 1.22793 1.02975 1.00389 0.77181 1.21718 0.99062 0.93276 1.00814 0.94457 0.93530 0.93225 0.94678 0.96753 0.92181 0.92631 0.90517 0.89655 0.83066 0.80625 0.75574 0.81790 0.83637 0.91075 0.89856 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.71 11.39 21.65 0.25 -59.46 16 2 C -0.07 -4.13 5.50 84.86 0.47 -3.66 16 3 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 4 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 5 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.23 -13.36 10.70 84.03 0.90 -12.46 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 N -0.64 -33.87 3.53 -722.53 -2.55 -36.42 16 10 C 0.13 5.45 7.72 86.32 0.67 6.11 16 11 C -0.08 -3.27 0.77 -52.03 -0.04 -3.31 16 12 C 0.17 8.48 6.64 86.32 0.57 9.05 16 13 C -0.09 -3.30 5.22 30.60 0.16 -3.14 16 14 C 0.12 4.00 6.30 86.42 0.54 4.54 16 15 N -0.58 -18.56 2.95 -822.64 -2.43 -20.99 16 16 C 0.57 18.54 7.59 86.85 0.66 19.20 16 17 O -0.58 -21.55 15.92 -3.82 -0.06 -21.61 16 18 C 0.05 1.41 6.42 42.03 0.27 1.68 16 19 C -0.11 -2.40 9.59 22.62 0.22 -2.18 16 20 C -0.08 -1.08 10.18 22.49 0.23 -0.85 16 21 C 0.06 0.87 7.29 39.25 0.29 1.16 16 22 N -0.57 -3.42 6.05 -187.40 -1.13 -4.56 16 23 H 0.44 -0.61 8.96 -92.71 -0.83 -1.44 16 24 C 0.10 0.52 11.81 83.03 0.98 1.50 16 25 C -0.22 -2.87 11.08 23.54 0.26 -2.61 16 26 C 0.06 1.13 7.52 41.94 0.32 1.45 16 27 N -0.43 -10.88 6.44 -174.25 -1.12 -12.00 16 28 C 0.09 2.53 5.85 86.26 0.50 3.03 16 29 C -0.11 -3.46 5.24 30.44 0.16 -3.30 16 30 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 31 H 0.05 1.83 8.07 -2.38 -0.02 1.81 16 32 H 0.05 1.97 7.41 -2.38 -0.02 1.95 16 33 H 0.03 1.98 7.12 -2.39 -0.02 1.97 16 34 H 0.01 0.75 8.09 -2.39 -0.02 0.73 16 35 H 0.06 2.60 8.01 -2.39 -0.02 2.58 16 36 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.43 7.49 -2.38 -0.02 2.41 16 38 H 0.09 2.90 6.97 -2.38 -0.02 2.89 16 39 H 0.15 3.05 7.79 -2.91 -0.02 3.02 16 40 H 0.18 1.05 8.06 -2.91 -0.02 1.02 16 41 H 0.23 -1.02 8.06 -2.91 -0.02 -1.05 16 42 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.15 4.01 3.95 -56.70 -0.22 3.78 16 44 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 45 H 0.08 2.47 8.12 -2.39 -0.02 2.45 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -81.22 369.26 2.11 -79.11 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -0.03 Total: 10.28 kcal Atomic # 6 Polarization: 9.07 SS G_CDS: 7.15 Total: 16.22 kcal Atomic # 7 Polarization: -126.44 SS G_CDS: -6.99 Total: -133.43 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.06 Total: -21.61 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -81.22 2.11 -79.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035747751.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.440 kcal (2) G-P(sol) polarization free energy of solvation -81.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds