Wall clock time and date at job start Tue Mar 31 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99509 * 2 1 4 4 H 1.48497 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46964 * 300.00294 * 3 2 1 6 6 H 1.48498 * 109.46981 * 59.99921 * 3 2 1 7 7 C 1.38804 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99800 * 198.34779 * 7 2 1 9 9 N 1.37142 * 120.00236 * 18.34704 * 7 2 1 10 10 C 1.44789 * 119.94245 * 205.54411 * 9 7 2 11 11 C 1.51452 * 113.00799 * 267.32867 * 10 9 7 12 12 C 1.51229 * 114.05805 * 294.65525 * 11 10 9 13 13 H 1.09681 * 110.75086 * 179.84289 * 12 11 10 14 14 C 1.54142 * 108.43498 * 301.85809 * 12 11 10 15 15 C 1.54003 * 104.77532 * 92.38095 * 14 12 11 16 16 C 1.52093 * 105.53896 * 11.62089 * 15 14 12 17 17 H 1.09461 * 108.20645 * 123.07624 * 16 15 14 18 18 C 1.49252 * 120.00180 * 25.22441 * 9 7 2 19 19 N 1.47724 * 109.51079 * 5.40320 * 16 15 14 20 20 C 1.34977 * 127.17689 * 158.57978 * 19 16 15 21 21 O 1.21588 * 119.99955 * 181.90011 * 20 19 16 22 22 C 1.47606 * 120.00072 * 1.90239 * 20 19 16 23 23 C 1.38563 * 119.73611 * 4.93390 * 22 20 19 24 24 N 1.33778 * 122.04975 * 179.97438 * 23 22 20 25 25 H 0.97003 * 119.62418 * 180.02562 * 24 23 22 26 26 C 1.37222 * 120.74024 * 0.02562 * 24 23 22 27 27 N 1.32004 * 134.47002 * 180.02562 * 26 24 23 28 28 C 1.33412 * 110.93330 * 179.27781 * 27 26 24 29 29 C 1.35790 * 110.88719 * 0.63590 * 28 27 26 30 30 C 1.41380 * 106.45268 * 359.49108 * 29 28 27 31 31 C 1.38762 * 135.65590 * 179.97438 * 30 29 28 32 32 H 0.97001 * 120.00851 * 0.02562 * 1 2 3 33 33 H 1.09358 * 108.42911 * 27.66871 * 10 9 7 34 34 H 1.08843 * 109.28834 * 145.32531 * 10 9 7 35 35 H 1.09169 * 108.71359 * 56.21860 * 11 10 9 36 36 H 1.09256 * 108.55028 * 173.44239 * 11 10 9 37 37 H 1.09337 * 110.59289 * 211.45909 * 14 12 11 38 38 H 1.09291 * 110.67829 * 333.16304 * 14 12 11 39 39 H 1.09044 * 110.67042 * 252.00739 * 15 14 12 40 40 H 1.09291 * 110.26091 * 130.53200 * 15 14 12 41 41 H 1.09156 * 109.49345 * 16.36379 * 18 9 7 42 42 H 1.09158 * 109.51396 * 256.84362 * 18 9 7 43 43 H 1.07996 * 118.97766 * 359.97438 * 23 22 20 44 44 H 1.07991 * 124.55755 * 180.12757 * 28 27 26 45 45 H 1.08003 * 126.77090 * 179.53179 * 29 28 27 46 46 H 1.08006 * 120.73331 * 0.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0492 -1.2259 0.2939 9 7 1.3769 -2.3594 -0.3749 10 6 1.8512 -3.6351 0.1192 11 6 2.8475 -4.2965 -0.8101 12 6 2.2687 -4.7013 -2.1473 13 1 3.0348 -5.1708 -2.7763 14 6 1.0923 -5.6656 -1.8974 15 6 -0.1521 -4.7602 -1.8397 16 6 0.3093 -3.4008 -2.3420 17 1 -0.3167 -3.1210 -3.1953 18 6 0.1955 -2.3028 -1.2852 19 7 1.7076 -3.4960 -2.8089 20 6 2.3395 -2.6667 -3.6660 21 8 3.4904 -2.8885 -3.9894 22 6 1.6335 -1.4904 -4.2108 23 6 0.3590 -1.1848 -3.7611 24 7 -0.3227 -0.1302 -4.2224 25 1 -1.2129 0.0513 -3.8826 26 6 0.2234 0.6976 -5.1709 27 7 -0.1899 1.7817 -5.8006 28 6 0.7447 2.2308 -6.6400 29 6 1.8437 1.4336 -6.6124 30 6 1.5745 0.4131 -5.6718 31 6 2.2584 -0.6905 -5.1819 32 1 -0.4851 0.8400 -0.0004 33 1 2.3337 -3.4732 1.0872 34 1 1.0028 -4.3000 0.2706 35 1 3.6779 -3.6085 -0.9804 36 1 3.2435 -5.1878 -0.3176 37 1 1.0046 -6.3853 -2.7158 38 1 1.2241 -6.1983 -0.9523 39 1 -0.5255 -4.6840 -0.8180 40 1 -0.9375 -5.1546 -2.4893 41 1 0.1582 -1.3272 -1.7733 42 1 -0.7184 -2.4465 -0.7058 43 1 -0.0983 -1.8176 -3.0149 44 1 0.6382 3.1056 -7.2641 45 1 2.7457 1.5557 -7.1937 46 1 3.2516 -0.9258 -5.5350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039390607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:54 Heat of formation + Delta-G solvation = 132.777363 kcal Electronic energy + Delta-G solvation = -31767.006586 eV Core-core repulsion = 27853.570562 eV Total energy + Delta-G solvation = -3913.436024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49541 -40.38724 -38.06615 -37.60777 -34.84745 -33.79852 -33.15338 -31.50478 -31.36422 -29.12989 -28.62223 -27.40185 -26.02153 -24.27924 -23.97858 -23.34951 -21.86915 -21.30903 -20.57954 -19.54035 -18.61605 -18.00602 -17.14840 -16.77901 -16.21108 -15.91857 -15.62615 -15.31915 -15.04763 -14.90941 -14.33644 -14.02809 -13.77559 -13.63396 -13.37832 -13.18649 -12.83771 -12.56191 -12.43446 -12.15340 -12.06065 -11.85249 -11.73973 -11.43070 -11.41865 -11.00442 -10.86635 -10.84584 -10.62470 -10.45888 -10.29165 -10.20651 -10.00965 -9.68887 -9.59810 -9.21860 -8.68749 -8.28873 -7.84247 -7.51702 -6.95451 -6.04041 -3.40781 0.49710 1.28350 2.59577 3.11172 3.25310 3.28268 3.39054 3.41723 3.70113 3.92755 4.30727 4.41727 4.50437 4.59793 4.72934 4.82190 4.94362 5.04702 5.10654 5.19879 5.30329 5.38411 5.40500 5.48733 5.54808 5.65526 5.80149 5.86022 5.88646 5.96256 6.01621 6.05686 6.18311 6.22858 6.24776 6.29383 6.40938 6.47952 6.55629 6.68101 6.70697 6.80782 6.85742 7.02893 7.10353 7.38762 7.64524 7.88230 8.18356 8.32981 8.50625 8.95535 9.62195 10.11470 11.05994 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.006031 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.324734 B = 4641.544950 C = 6003.481644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.007 3.993 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.288 1.288 7 C -0.244 4.244 8 H 0.068 0.932 9 N -0.576 5.576 10 C 0.156 3.844 11 C -0.156 4.156 12 C 0.148 3.852 13 H 0.084 0.916 14 C -0.125 4.125 15 C -0.118 4.118 16 C 0.078 3.922 17 H 0.071 0.929 18 C 0.133 3.867 19 N -0.587 5.587 20 C 0.609 3.391 21 O -0.549 6.549 22 C -0.228 4.228 23 C 0.143 3.857 24 N -0.484 5.484 25 H 0.427 0.573 26 C 0.244 3.756 27 N -0.536 5.536 28 C 0.045 3.955 29 C -0.227 4.227 30 C -0.179 4.179 31 C 0.084 3.916 32 H 0.254 0.746 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.238 0.762 44 H 0.155 0.845 45 H 0.135 0.865 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -9.809 -6.056 11.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.373 4.373 8 H 0.085 0.915 9 N -0.298 5.298 10 C 0.029 3.971 11 C -0.197 4.197 12 C 0.045 3.955 13 H 0.102 0.898 14 C -0.163 4.163 15 C -0.156 4.156 16 C -0.028 4.028 17 H 0.089 0.911 18 C 0.008 3.992 19 N -0.319 5.319 20 C 0.399 3.601 21 O -0.428 6.428 22 C -0.237 4.237 23 C 0.000 4.000 24 N -0.076 5.076 25 H 0.265 0.735 26 C -0.004 4.004 27 N -0.255 5.255 28 C -0.099 4.099 29 C -0.250 4.250 30 C -0.187 4.187 31 C 0.060 3.940 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.069 0.931 43 H 0.253 0.747 44 H 0.172 0.828 45 H 0.152 0.848 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.218 -9.109 -6.246 11.504 hybrid contribution 0.944 0.968 0.101 1.356 sum -2.274 -8.141 -6.144 10.450 Atomic orbital electron populations 1.69998 1.04996 1.25540 1.54892 1.24846 0.95280 0.98104 1.00853 0.86414 0.79977 0.84228 0.77566 1.20057 1.21366 1.21488 1.19238 0.93380 0.84895 1.39773 0.91453 1.43768 1.33156 1.01381 1.51490 1.20049 0.94970 0.87584 0.94519 1.22095 1.01298 1.00444 0.95854 1.21556 0.95540 0.84635 0.93731 0.89766 1.22484 0.94231 0.97144 1.02430 1.22035 0.97592 0.93147 1.02784 1.22693 0.83092 0.98813 0.98152 0.91147 1.22229 0.91711 0.95276 0.90016 1.48490 1.12533 1.27099 1.43792 1.16982 0.85145 0.80680 0.77305 1.90737 1.16779 1.73881 1.61417 1.19198 0.95632 1.02488 1.06409 1.25287 0.93900 0.87448 0.93382 1.40443 1.18000 1.19662 1.29461 0.73536 1.20520 0.92040 0.94029 0.93829 1.69480 1.32842 1.10200 1.13013 1.22219 0.90296 0.99513 0.97849 1.21295 1.01391 0.98097 1.04181 1.20048 0.95302 0.99467 1.03835 1.21363 0.97679 0.87766 0.87214 0.93633 0.93409 0.94638 0.91943 0.92289 0.91478 0.89903 0.89511 0.91011 0.88834 0.93135 0.74737 0.82761 0.84751 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.08 11.24 55.49 0.62 -22.46 16 2 C 0.01 0.18 4.88 -17.43 -0.09 0.09 16 3 Si 0.89 21.56 29.59 -169.99 -5.03 16.53 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.08 9.55 -14.97 -0.14 -6.22 16 8 H 0.07 1.76 7.90 -52.48 -0.41 1.34 16 9 N -0.58 -12.12 2.63 -173.07 -0.46 -12.58 16 10 C 0.16 2.76 5.25 -5.74 -0.03 2.73 16 11 C -0.16 -2.45 5.03 -28.41 -0.14 -2.59 16 12 C 0.15 2.13 3.57 -67.12 -0.24 1.89 16 13 H 0.08 1.23 8.07 -51.54 -0.42 0.82 16 14 C -0.12 -1.34 5.98 -25.61 -0.15 -1.49 16 15 C -0.12 -1.30 5.73 -26.67 -0.15 -1.45 16 16 C 0.08 1.10 2.24 -67.81 -0.15 0.95 16 17 H 0.07 0.85 5.70 -51.67 -0.29 0.56 16 18 C 0.13 2.43 3.77 -2.60 -0.01 2.42 16 19 N -0.59 -9.55 2.33 -160.81 -0.37 -9.93 16 20 C 0.61 11.40 7.84 -12.35 -0.10 11.30 16 21 O -0.55 -11.62 16.68 5.29 0.09 -11.53 16 22 C -0.23 -4.05 5.86 -105.11 -0.62 -4.66 16 23 C 0.14 2.29 7.86 -16.58 -0.13 2.16 16 24 N -0.48 -7.62 5.27 -10.37 -0.05 -7.67 16 25 H 0.43 5.52 8.91 -40.82 -0.36 5.15 16 26 C 0.24 4.52 8.64 -153.91 -1.33 3.19 16 27 N -0.54 -10.30 11.16 -11.08 -0.12 -10.42 16 28 C 0.04 0.77 11.69 -17.74 -0.21 0.56 16 29 C -0.23 -3.86 10.99 -39.26 -0.43 -4.29 16 30 C -0.18 -3.28 6.41 -105.01 -0.67 -3.96 16 31 C 0.08 1.49 9.71 -38.54 -0.37 1.11 16 32 H 0.25 6.41 8.31 -40.82 -0.34 6.07 16 33 H 0.05 0.89 7.99 -51.73 -0.41 0.48 16 34 H 0.04 0.56 5.44 -52.02 -0.28 0.27 16 35 H 0.06 1.19 8.16 -51.83 -0.42 0.77 16 36 H 0.06 0.77 8.16 -51.78 -0.42 0.34 16 37 H 0.07 0.62 8.17 -51.74 -0.42 0.20 16 38 H 0.08 0.79 7.64 -51.76 -0.40 0.39 16 39 H 0.09 0.99 6.47 -51.90 -0.34 0.66 16 40 H 0.07 0.63 8.17 -51.76 -0.42 0.20 16 41 H 0.09 1.86 3.26 -51.84 -0.17 1.70 16 42 H 0.05 0.96 7.91 -51.84 -0.41 0.55 16 43 H 0.24 3.49 1.46 -56.65 -0.08 3.41 16 44 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 45 H 0.13 1.91 8.06 -52.48 -0.42 1.49 16 46 H 0.15 2.39 7.68 -52.48 -0.40 1.99 16 LS Contribution 350.71 15.07 5.29 5.29 Total: -1.00 -32.10 350.71 -10.66 -42.76 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.65 Total: 8.27 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -4.97 Total: 1.74 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: -0.38 Total: -63.06 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.10 -10.66 -42.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039390607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.540 kcal (2) G-P(sol) polarization free energy of solvation -32.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds