Wall clock time and date at job start Tue Mar 31 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99509 * 2 1 4 4 H 1.48497 * 109.46917 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46964 * 300.00294 * 3 2 1 6 6 H 1.48498 * 109.46981 * 59.99921 * 3 2 1 7 7 C 1.38804 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99800 * 198.34779 * 7 2 1 9 9 N 1.37142 * 120.00236 * 18.34704 * 7 2 1 10 10 C 1.44789 * 119.94245 * 205.54411 * 9 7 2 11 11 C 1.51452 * 113.00799 * 267.32867 * 10 9 7 12 12 C 1.51229 * 114.05805 * 294.65525 * 11 10 9 13 13 H 1.09681 * 110.75086 * 179.84289 * 12 11 10 14 14 C 1.54142 * 108.43498 * 301.85809 * 12 11 10 15 15 C 1.54003 * 104.77532 * 92.38095 * 14 12 11 16 16 C 1.52093 * 105.53896 * 11.62089 * 15 14 12 17 17 H 1.09461 * 108.20645 * 123.07624 * 16 15 14 18 18 C 1.49252 * 120.00180 * 25.22441 * 9 7 2 19 19 N 1.47724 * 109.51079 * 5.40320 * 16 15 14 20 20 C 1.34977 * 127.17689 * 158.57978 * 19 16 15 21 21 O 1.21588 * 119.99955 * 181.90011 * 20 19 16 22 22 C 1.47606 * 120.00072 * 1.90239 * 20 19 16 23 23 C 1.38563 * 119.73611 * 4.93390 * 22 20 19 24 24 N 1.33778 * 122.04975 * 179.97438 * 23 22 20 25 25 H 0.97003 * 119.62418 * 180.02562 * 24 23 22 26 26 C 1.37222 * 120.74024 * 0.02562 * 24 23 22 27 27 N 1.32004 * 134.47002 * 180.02562 * 26 24 23 28 28 C 1.33412 * 110.93330 * 179.27781 * 27 26 24 29 29 C 1.35790 * 110.88719 * 0.63590 * 28 27 26 30 30 C 1.41380 * 106.45268 * 359.49108 * 29 28 27 31 31 C 1.38762 * 135.65590 * 179.97438 * 30 29 28 32 32 H 0.97001 * 120.00851 * 0.02562 * 1 2 3 33 33 H 1.09358 * 108.42911 * 27.66871 * 10 9 7 34 34 H 1.08843 * 109.28834 * 145.32531 * 10 9 7 35 35 H 1.09169 * 108.71359 * 56.21860 * 11 10 9 36 36 H 1.09256 * 108.55028 * 173.44239 * 11 10 9 37 37 H 1.09337 * 110.59289 * 211.45909 * 14 12 11 38 38 H 1.09291 * 110.67829 * 333.16304 * 14 12 11 39 39 H 1.09044 * 110.67042 * 252.00739 * 15 14 12 40 40 H 1.09291 * 110.26091 * 130.53200 * 15 14 12 41 41 H 1.09156 * 109.49345 * 16.36379 * 18 9 7 42 42 H 1.09158 * 109.51396 * 256.84362 * 18 9 7 43 43 H 1.07996 * 118.97766 * 359.97438 * 23 22 20 44 44 H 1.07991 * 124.55755 * 180.12757 * 28 27 26 45 45 H 1.08003 * 126.77090 * 179.53179 * 29 28 27 46 46 H 1.08006 * 120.73331 * 0.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8912 2.3965 -1.2125 6 1 1.8912 2.3965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0492 -1.2259 0.2939 9 7 1.3769 -2.3594 -0.3749 10 6 1.8512 -3.6351 0.1192 11 6 2.8475 -4.2965 -0.8101 12 6 2.2687 -4.7013 -2.1473 13 1 3.0348 -5.1708 -2.7763 14 6 1.0923 -5.6656 -1.8974 15 6 -0.1521 -4.7602 -1.8397 16 6 0.3093 -3.4008 -2.3420 17 1 -0.3167 -3.1210 -3.1953 18 6 0.1955 -2.3028 -1.2852 19 7 1.7076 -3.4960 -2.8089 20 6 2.3395 -2.6667 -3.6660 21 8 3.4904 -2.8885 -3.9894 22 6 1.6335 -1.4904 -4.2108 23 6 0.3590 -1.1848 -3.7611 24 7 -0.3227 -0.1302 -4.2224 25 1 -1.2129 0.0513 -3.8826 26 6 0.2234 0.6976 -5.1709 27 7 -0.1899 1.7817 -5.8006 28 6 0.7447 2.2308 -6.6400 29 6 1.8437 1.4336 -6.6124 30 6 1.5745 0.4131 -5.6718 31 6 2.2584 -0.6905 -5.1819 32 1 -0.4851 0.8400 -0.0004 33 1 2.3337 -3.4732 1.0872 34 1 1.0028 -4.3000 0.2706 35 1 3.6779 -3.6085 -0.9804 36 1 3.2435 -5.1878 -0.3176 37 1 1.0046 -6.3853 -2.7158 38 1 1.2241 -6.1983 -0.9523 39 1 -0.5255 -4.6840 -0.8180 40 1 -0.9375 -5.1546 -2.4893 41 1 0.1582 -1.3272 -1.7733 42 1 -0.7184 -2.4465 -0.7058 43 1 -0.0983 -1.8176 -3.0149 44 1 0.6382 3.1056 -7.2641 45 1 2.7457 1.5557 -7.1937 46 1 3.2516 -0.9258 -5.5350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039390607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:00:54 Heat of formation + Delta-G solvation = 113.976844 kcal Electronic energy + Delta-G solvation = -31767.821838 eV Core-core repulsion = 27853.570562 eV Total energy + Delta-G solvation = -3914.251276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.81511 -41.66568 -39.40672 -39.00325 -36.44778 -35.13246 -34.49385 -33.12590 -32.64353 -30.47799 -29.97127 -28.86926 -27.31697 -25.89953 -25.29461 -24.74338 -23.17832 -22.44090 -21.95830 -20.93681 -19.90946 -19.38300 -18.48816 -18.32551 -17.67384 -17.23303 -17.13901 -16.59592 -16.43948 -16.35028 -15.89923 -15.41332 -15.29059 -14.96579 -14.87189 -14.42116 -14.19994 -13.83253 -13.70259 -13.47899 -13.35922 -13.33322 -13.09223 -12.93089 -12.86704 -12.63317 -12.43691 -12.25850 -11.94615 -11.87810 -11.86025 -11.63880 -11.46884 -11.12874 -10.82745 -10.61997 -10.56853 -9.63460 -9.20213 -8.86601 -8.69969 -7.98030 -5.30990 -0.84138 -0.08163 1.28111 1.30915 1.38280 1.41862 1.73407 1.95797 2.35378 2.40532 2.54394 3.11213 3.15337 3.27281 3.42439 3.50659 3.60174 3.74749 3.87838 4.02747 4.04501 4.12918 4.18609 4.22602 4.41761 4.50155 4.57734 4.69003 4.71425 4.78066 4.90334 4.92659 4.97714 4.99211 5.09275 5.15556 5.21601 5.26671 5.27774 5.35361 5.44831 5.52050 5.55852 5.63047 5.68320 5.77151 6.09253 6.31395 6.56589 6.97327 7.11098 7.11481 7.85483 8.27720 9.08266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010444 B = 0.006031 C = 0.004663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2680.324734 B = 4641.544950 C = 6003.481644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.022 4.022 3 Si 0.918 3.082 4 H -0.283 1.283 5 H -0.304 1.304 6 H -0.287 1.287 7 C -0.239 4.239 8 H 0.045 0.955 9 N -0.591 5.591 10 C 0.154 3.846 11 C -0.145 4.145 12 C 0.139 3.861 13 H 0.081 0.919 14 C -0.113 4.113 15 C -0.113 4.113 16 C 0.077 3.923 17 H 0.098 0.902 18 C 0.134 3.866 19 N -0.587 5.587 20 C 0.600 3.400 21 O -0.585 6.585 22 C -0.246 4.246 23 C 0.159 3.841 24 N -0.473 5.473 25 H 0.439 0.561 26 C 0.222 3.778 27 N -0.557 5.557 28 C 0.031 3.969 29 C -0.229 4.229 30 C -0.202 4.202 31 C 0.082 3.918 32 H 0.250 0.750 33 H 0.029 0.971 34 H 0.067 0.933 35 H 0.017 0.983 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.252 0.748 44 H 0.184 0.816 45 H 0.158 0.842 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.372 -12.169 -6.308 14.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.218 4.218 3 Si 0.750 3.250 4 H -0.209 1.209 5 H -0.232 1.232 6 H -0.214 1.214 7 C -0.370 4.370 8 H 0.063 0.937 9 N -0.313 5.313 10 C 0.027 3.973 11 C -0.186 4.186 12 C 0.037 3.963 13 H 0.099 0.901 14 C -0.151 4.151 15 C -0.151 4.151 16 C -0.027 4.027 17 H 0.116 0.884 18 C 0.009 3.991 19 N -0.317 5.317 20 C 0.391 3.609 21 O -0.467 6.467 22 C -0.255 4.255 23 C 0.014 3.986 24 N -0.066 5.066 25 H 0.280 0.720 26 C -0.026 4.026 27 N -0.278 5.278 28 C -0.112 4.112 29 C -0.252 4.252 30 C -0.210 4.210 31 C 0.057 3.943 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.126 0.874 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.266 0.734 44 H 0.201 0.799 45 H 0.176 0.824 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.762 -11.496 -6.477 14.028 hybrid contribution 1.471 1.673 0.226 2.239 sum -3.291 -9.823 -6.251 12.099 Atomic orbital electron populations 1.70021 1.04761 1.25165 1.56011 1.25023 0.95759 0.98738 1.02299 0.85957 0.79089 0.83392 0.76610 1.20861 1.23185 1.21429 1.19206 0.92659 0.86631 1.38538 0.93679 1.43943 1.33588 1.01325 1.52451 1.20191 0.96232 0.86819 0.94009 1.21979 0.99282 1.00520 0.96830 1.21801 0.97412 0.84791 0.92327 0.90122 1.22485 0.91652 0.96389 1.04557 1.22096 0.98558 0.90783 1.03622 1.22755 0.82474 0.99764 0.97740 0.88447 1.22216 0.90373 0.96105 0.90454 1.48612 1.13463 1.26986 1.42661 1.17175 0.84888 0.81100 0.77746 1.90703 1.18237 1.74829 1.62959 1.19283 0.96468 1.02745 1.07006 1.25454 0.93294 0.87234 0.92615 1.40464 1.18461 1.19008 1.28671 0.72043 1.20777 0.92576 0.94516 0.94689 1.69465 1.33869 1.10646 1.13777 1.22741 0.90023 1.00492 0.97959 1.21662 1.02245 0.97423 1.03831 1.20340 0.95682 1.00204 1.04770 1.21471 0.97909 0.87662 0.87219 0.94028 0.95213 0.91467 0.96434 0.88998 0.89035 0.87868 0.89340 0.87389 0.90813 0.93348 0.73385 0.79924 0.82395 0.83207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.18 11.24 21.65 0.24 -45.94 16 2 C -0.02 -1.11 4.88 84.86 0.41 -0.70 16 3 Si 0.92 45.06 29.59 68.60 2.03 47.09 16 4 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 5 H -0.30 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 7 C -0.24 -12.11 9.55 84.00 0.80 -11.31 16 8 H 0.05 2.44 7.90 -2.91 -0.02 2.42 16 9 N -0.59 -24.42 2.63 -701.48 -1.85 -26.27 16 10 C 0.15 5.17 5.25 86.19 0.45 5.63 16 11 C -0.15 -4.35 5.03 29.51 0.15 -4.20 16 12 C 0.14 3.65 3.57 44.41 0.16 3.81 16 13 H 0.08 2.21 8.07 -2.02 -0.02 2.19 16 14 C -0.11 -1.84 5.98 31.32 0.19 -1.66 16 15 C -0.11 -1.91 5.73 30.63 0.18 -1.74 16 16 C 0.08 1.94 2.24 44.40 0.10 2.04 16 17 H 0.10 2.00 5.70 -2.14 -0.01 1.99 16 18 C 0.13 4.64 3.77 85.79 0.32 4.97 16 19 N -0.59 -18.12 2.33 -780.84 -1.82 -19.94 16 20 C 0.60 22.41 7.84 86.68 0.68 23.09 16 21 O -0.58 -25.25 16.68 -3.99 -0.07 -25.32 16 22 C -0.25 -8.72 5.86 -20.18 -0.12 -8.84 16 23 C 0.16 4.95 7.86 84.47 0.66 5.61 16 24 N -0.47 -14.66 5.27 -186.74 -0.98 -15.65 16 25 H 0.44 11.03 8.91 -92.71 -0.83 10.20 16 26 C 0.22 8.22 8.64 135.83 1.17 9.39 16 27 N -0.56 -21.27 11.16 -188.98 -2.11 -23.38 16 28 C 0.03 1.04 11.69 83.88 0.98 2.02 16 29 C -0.23 -7.67 10.99 22.48 0.25 -7.42 16 30 C -0.20 -7.45 6.41 -20.12 -0.13 -7.58 16 31 C 0.08 2.93 9.71 22.94 0.22 3.15 16 32 H 0.25 12.61 8.31 -92.71 -0.77 11.84 16 33 H 0.03 1.09 7.99 -2.20 -0.02 1.07 16 34 H 0.07 1.86 5.44 -2.47 -0.01 1.84 16 35 H 0.02 0.66 8.16 -2.30 -0.02 0.64 16 36 H 0.09 2.13 8.16 -2.25 -0.02 2.11 16 37 H 0.09 1.15 8.17 -2.21 -0.02 1.13 16 38 H 0.10 1.35 7.64 -2.23 -0.02 1.33 16 39 H 0.09 1.55 6.47 -2.36 -0.02 1.53 16 40 H 0.11 1.17 8.17 -2.23 -0.02 1.15 16 41 H 0.07 2.87 3.26 -2.30 -0.01 2.87 16 42 H 0.05 1.72 7.91 -2.30 -0.02 1.70 16 43 H 0.25 6.97 1.46 -6.82 -0.01 6.96 16 44 H 0.18 4.81 8.06 -2.92 -0.02 4.79 16 45 H 0.16 4.32 8.06 -2.91 -0.02 4.30 16 46 H 0.15 5.08 7.68 -2.91 -0.02 5.06 16 Total: -1.00 -71.76 350.71 2.16 -69.59 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.23 Total: 23.54 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.48 Total: 16.27 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -6.52 Total: -131.17 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.07 Total: -25.32 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -71.76 2.16 -69.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039390607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.571 kcal (2) G-P(sol) polarization free energy of solvation -71.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds