Wall clock time and date at job start Tue Mar 31 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48506 * 109.47252 * 269.99944 * 3 2 1 5 5 H 1.48498 * 109.47053 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.47067 * 150.00144 * 3 2 1 7 7 C 1.38820 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.47141 * 125.60705 * 359.97438 * 9 7 2 11 11 C 1.54588 * 107.32669 * 179.08547 * 10 9 7 12 12 C 1.53708 * 102.95360 * 339.03608 * 11 10 9 13 13 C 1.52875 * 111.75019 * 273.44888 * 12 11 10 14 14 C 1.54758 * 104.40706 * 237.42697 * 13 12 11 15 15 N 1.48265 * 104.67418 * 23.63053 * 14 13 12 16 16 C 1.34782 * 127.71853 * 141.28876 * 15 14 13 17 17 O 1.21584 * 119.99771 * 176.66110 * 16 15 14 18 18 C 1.47602 * 120.00203 * 356.65973 * 16 15 14 19 19 C 1.38563 * 119.74123 * 30.96795 * 18 16 15 20 20 N 1.33764 * 122.05987 * 180.02562 * 19 18 16 21 21 H 0.97001 * 119.63583 * 180.02562 * 20 19 18 22 22 C 1.37233 * 120.73889 * 359.97438 * 20 19 18 23 23 N 1.31996 * 134.47527 * 180.02562 * 22 20 19 24 24 C 1.33403 * 110.93475 * 179.97438 * 23 22 20 25 25 C 1.35783 * 110.89457 * 0.02562 * 24 23 22 26 26 C 1.41391 * 106.45079 * 359.97438 * 25 24 23 27 27 C 1.38758 * 135.65430 * 180.31579 * 26 25 24 28 28 C 1.48486 * 104.55964 * 321.28708 * 15 14 13 29 29 C 1.47708 * 125.60407 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99521 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.87244 * 59.65369 * 10 9 7 32 32 H 1.08997 * 109.99027 * 298.58773 * 10 9 7 33 33 H 1.09001 * 110.74550 * 97.45576 * 11 10 9 34 34 H 1.09001 * 110.74907 * 220.61936 * 11 10 9 35 35 H 1.09002 * 110.44871 * 356.15735 * 13 12 11 36 36 H 1.09002 * 110.44817 * 118.57172 * 13 12 11 37 37 H 1.08998 * 110.39471 * 142.43420 * 14 13 12 38 38 H 1.09003 * 110.39258 * 264.71858 * 14 13 12 39 39 H 1.08002 * 118.97227 * 359.97438 * 19 18 16 40 40 H 1.08003 * 124.55698 * 179.97438 * 24 23 22 41 41 H 1.08006 * 126.77853 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.73606 * 359.87788 * 27 26 25 43 43 H 1.08996 * 110.47508 * 279.56940 * 28 15 14 44 44 H 1.09001 * 110.47103 * 156.95465 * 28 15 14 45 45 H 1.09003 * 110.39052 * 321.37325 * 29 9 7 46 46 H 1.08996 * 110.38903 * 83.76102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1388 -2.5318 0.0005 11 6 -0.4530 -4.0452 -0.0235 12 6 0.8454 -4.6579 -0.5725 13 6 0.8587 -4.6811 -2.1010 14 6 1.0585 -6.1728 -2.4617 15 7 0.5688 -6.9149 -1.2753 16 6 -0.1326 -8.0657 -1.2542 17 8 -0.4124 -8.5876 -0.1924 18 6 -0.5611 -8.6922 -2.5201 19 6 0.2146 -8.5421 -3.6584 20 7 -0.1298 -9.0891 -4.8295 21 1 0.4398 -8.9618 -5.6043 22 6 -1.2794 -9.8293 -4.9469 23 7 -1.8668 -10.4744 -5.9374 24 6 -2.9970 -11.0517 -5.5263 25 6 -3.2143 -10.8070 -4.2085 26 6 -2.1312 -10.0139 -3.7647 27 6 -1.7496 -9.4401 -2.5603 28 6 1.0239 -6.1070 -0.1156 29 6 1.9356 -3.7333 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5588 -2.0521 -0.8836 32 1 -0.5568 -2.0807 0.9005 33 1 -0.6586 -4.4128 0.9819 34 1 -1.2905 -4.2552 -0.6886 35 1 -0.0902 -4.3177 -2.4957 36 1 1.6842 -4.0810 -2.4838 37 1 0.4705 -6.4328 -3.3419 38 1 2.1138 -6.3836 -2.6350 39 1 1.1253 -7.9646 -3.5985 40 1 -3.6517 -11.6347 -6.1571 41 1 -4.0496 -11.1504 -3.6162 42 1 -2.3549 -9.5624 -1.6743 43 1 2.0719 -6.3113 0.1036 44 1 0.4040 -6.3105 0.7576 45 1 2.8194 -3.7496 -0.6383 46 1 2.1935 -4.0333 1.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041380899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:54 Heat of formation + Delta-G solvation = 100.690300 kcal Electronic energy + Delta-G solvation = -29145.198479 eV Core-core repulsion = 25230.371055 eV Total energy + Delta-G solvation = -3914.827423 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86076 -40.39629 -38.76969 -38.09410 -35.87244 -34.16598 -32.79087 -30.78532 -30.04706 -29.37271 -29.08747 -28.38864 -25.81940 -24.75653 -24.41605 -23.03337 -22.71134 -21.56046 -20.30249 -19.61459 -18.91310 -18.07853 -17.78712 -16.96220 -16.76153 -16.44738 -16.01627 -15.57055 -15.39714 -14.86592 -14.70807 -14.27795 -14.20501 -13.92978 -13.52756 -13.34592 -12.82829 -12.75811 -12.74138 -12.63104 -12.23513 -12.16357 -12.00866 -11.60617 -11.36424 -11.16069 -11.09152 -10.94385 -10.81065 -10.28200 -10.21870 -10.07610 -10.00834 -9.83369 -9.75830 -9.70350 -8.87077 -8.64794 -8.46869 -8.06314 -6.88884 -5.76413 -3.10249 -0.13948 0.69051 1.91652 2.52364 2.70962 3.18010 3.25792 3.35446 3.40936 3.43031 3.73438 4.02446 4.07197 4.37373 4.44389 4.53695 4.71682 4.79653 4.84885 4.87843 5.08450 5.15571 5.31860 5.35834 5.46339 5.52466 5.59506 5.65932 5.68411 5.76060 5.79651 5.84082 5.92054 6.04250 6.15176 6.19346 6.27846 6.29072 6.43942 6.52284 6.53095 6.63074 6.75556 6.83458 7.34351 7.50858 7.57775 7.78025 7.78368 7.92315 8.19984 9.16428 9.76688 10.42376 11.34988 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.002315 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.469678 B =12093.364823 C =12402.953061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.604 5.604 10 C 0.179 3.821 11 C -0.131 4.131 12 C -0.087 4.087 13 C -0.109 4.109 14 C 0.082 3.918 15 N -0.617 5.617 16 C 0.593 3.407 17 O -0.534 6.534 18 C -0.223 4.223 19 C 0.169 3.831 20 N -0.488 5.488 21 H 0.428 0.572 22 C 0.243 3.757 23 N -0.530 5.530 24 C 0.053 3.947 25 C -0.221 4.221 26 C -0.169 4.169 27 C 0.082 3.918 28 C 0.124 3.876 29 C 0.151 3.849 30 H 0.252 0.748 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.190 0.810 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.148 0.852 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.462 -18.521 -8.986 20.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.357 4.357 8 H 0.095 0.905 9 N -0.330 5.330 10 C 0.055 3.945 11 C -0.169 4.169 12 C -0.089 4.089 13 C -0.147 4.147 14 C -0.040 4.040 15 N -0.350 5.350 16 C 0.382 3.618 17 O -0.411 6.411 18 C -0.233 4.233 19 C 0.025 3.975 20 N -0.080 5.080 21 H 0.266 0.734 22 C -0.006 4.006 23 N -0.250 5.250 24 C -0.090 4.090 25 C -0.243 4.243 26 C -0.177 4.177 27 C 0.058 3.942 28 C 0.002 3.998 29 C 0.025 3.975 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.206 0.794 40 H 0.178 0.822 41 H 0.158 0.842 42 H 0.166 0.834 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.059 0.941 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.437 -18.815 -9.464 21.066 hybrid contribution 0.306 1.113 0.419 1.228 sum 0.743 -17.702 -9.045 19.893 Atomic orbital electron populations 1.69966 1.04883 1.25055 1.56936 1.24803 0.95701 0.97672 1.02234 0.86136 0.78606 0.83566 0.77534 1.21640 1.21695 1.20706 1.19030 0.90383 0.82358 1.43941 0.90461 1.44527 1.01602 0.99667 1.87238 1.21196 0.84222 0.88060 1.01039 1.22835 0.95000 0.99480 0.99604 1.21732 0.99036 0.93090 0.95005 1.22315 1.03855 0.93229 0.95297 1.22966 0.99008 0.93416 0.88635 1.49008 1.53843 1.22427 1.09720 1.17183 0.77505 0.79262 0.87859 1.90827 1.56452 1.62446 1.31347 1.19258 1.00229 1.10049 0.93727 1.22774 0.99215 0.91906 0.83606 1.40283 1.18630 1.37489 1.11644 0.73416 1.20477 0.88443 0.97767 0.93902 1.69526 1.10247 1.15545 1.29639 1.22350 0.93553 0.99223 0.93909 1.21435 1.00080 1.05845 0.96966 1.20116 0.98872 1.05854 0.92837 1.21371 0.91119 0.84797 0.96885 1.22264 0.99847 0.88653 0.88996 1.21446 0.93247 0.85862 0.96982 0.93741 0.93659 0.94015 0.92325 0.92263 0.90577 0.89429 0.90498 0.90296 0.79359 0.82239 0.84214 0.83387 0.90697 0.89577 0.94081 0.96122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.23 10.31 55.49 0.57 -25.66 16 2 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 3 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 4 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.23 -6.03 10.28 -15.06 -0.15 -6.19 16 8 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.60 -14.26 3.41 -170.17 -0.58 -14.84 16 10 C 0.18 4.10 5.34 -2.86 -0.02 4.09 16 11 C -0.13 -2.27 5.83 -25.53 -0.15 -2.42 16 12 C -0.09 -1.27 0.82 -153.71 -0.13 -1.40 16 13 C -0.11 -1.33 6.28 -25.87 -0.16 -1.50 16 14 C 0.08 0.68 5.23 -2.14 -0.01 0.67 16 15 N -0.62 -6.78 3.33 -170.75 -0.57 -7.35 16 16 C 0.59 7.21 7.63 -12.44 -0.09 7.12 16 17 O -0.53 -8.46 17.03 5.29 0.09 -8.37 16 18 C -0.22 -2.16 5.68 -105.11 -0.60 -2.76 16 19 C 0.17 1.07 8.93 -16.59 -0.15 0.92 16 20 N -0.49 -3.29 5.27 -10.37 -0.05 -3.35 16 21 H 0.43 1.47 8.91 -40.82 -0.36 1.10 16 22 C 0.24 2.70 8.64 -153.90 -1.33 1.37 16 23 N -0.53 -6.77 11.16 -11.08 -0.12 -6.89 16 24 C 0.05 0.61 11.69 -17.75 -0.21 0.40 16 25 C -0.22 -2.47 10.99 -39.26 -0.43 -2.90 16 26 C -0.17 -1.95 6.41 -105.01 -0.67 -2.62 16 27 C 0.08 0.88 9.72 -38.55 -0.37 0.50 16 28 C 0.12 1.57 6.18 -2.95 -0.02 1.55 16 29 C 0.15 2.73 6.07 -2.88 -0.02 2.72 16 30 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.05 1.15 7.39 -51.93 -0.38 0.77 16 32 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 33 H 0.06 1.00 7.73 -51.93 -0.40 0.60 16 34 H 0.06 0.97 7.71 -51.93 -0.40 0.57 16 35 H 0.08 1.01 7.51 -51.93 -0.39 0.62 16 36 H 0.09 1.13 7.55 -51.93 -0.39 0.73 16 37 H 0.08 0.47 5.47 -51.93 -0.28 0.18 16 38 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 39 H 0.19 0.58 5.21 -52.49 -0.27 0.30 16 40 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 41 H 0.14 1.26 8.06 -52.48 -0.42 0.84 16 42 H 0.15 1.50 7.95 -52.49 -0.42 1.08 16 43 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 44 H 0.09 1.21 7.39 -51.93 -0.38 0.82 16 45 H 0.04 0.70 7.76 -51.93 -0.40 0.30 16 46 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 LS Contribution 366.94 15.07 5.53 5.53 Total: -1.00 -35.12 366.94 -10.89 -46.00 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -6.12 Total: -0.66 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: -4.61 Total: -0.76 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.76 Total: -58.09 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.12 -10.89 -46.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041380899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.694 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds