Wall clock time and date at job start Tue Mar 31 2020 22:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48506 * 109.47252 * 269.99944 * 3 2 1 5 5 H 1.48498 * 109.47053 * 30.00013 * 3 2 1 6 6 H 1.48504 * 109.47067 * 150.00144 * 3 2 1 7 7 C 1.38820 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.47141 * 125.60705 * 359.97438 * 9 7 2 11 11 C 1.54588 * 107.32669 * 179.08547 * 10 9 7 12 12 C 1.53708 * 102.95360 * 339.03608 * 11 10 9 13 13 C 1.52875 * 111.75019 * 273.44888 * 12 11 10 14 14 C 1.54758 * 104.40706 * 237.42697 * 13 12 11 15 15 N 1.48265 * 104.67418 * 23.63053 * 14 13 12 16 16 C 1.34782 * 127.71853 * 141.28876 * 15 14 13 17 17 O 1.21584 * 119.99771 * 176.66110 * 16 15 14 18 18 C 1.47602 * 120.00203 * 356.65973 * 16 15 14 19 19 C 1.38563 * 119.74123 * 30.96795 * 18 16 15 20 20 N 1.33764 * 122.05987 * 180.02562 * 19 18 16 21 21 H 0.97001 * 119.63583 * 180.02562 * 20 19 18 22 22 C 1.37233 * 120.73889 * 359.97438 * 20 19 18 23 23 N 1.31996 * 134.47527 * 180.02562 * 22 20 19 24 24 C 1.33403 * 110.93475 * 179.97438 * 23 22 20 25 25 C 1.35783 * 110.89457 * 0.02562 * 24 23 22 26 26 C 1.41391 * 106.45079 * 359.97438 * 25 24 23 27 27 C 1.38758 * 135.65430 * 180.31579 * 26 25 24 28 28 C 1.48486 * 104.55964 * 321.28708 * 15 14 13 29 29 C 1.47708 * 125.60407 * 180.02562 * 9 7 2 30 30 H 0.97001 * 119.99521 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.87244 * 59.65369 * 10 9 7 32 32 H 1.08997 * 109.99027 * 298.58773 * 10 9 7 33 33 H 1.09001 * 110.74550 * 97.45576 * 11 10 9 34 34 H 1.09001 * 110.74907 * 220.61936 * 11 10 9 35 35 H 1.09002 * 110.44871 * 356.15735 * 13 12 11 36 36 H 1.09002 * 110.44817 * 118.57172 * 13 12 11 37 37 H 1.08998 * 110.39471 * 142.43420 * 14 13 12 38 38 H 1.09003 * 110.39258 * 264.71858 * 14 13 12 39 39 H 1.08002 * 118.97227 * 359.97438 * 19 18 16 40 40 H 1.08003 * 124.55698 * 179.97438 * 24 23 22 41 41 H 1.08006 * 126.77853 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.73606 * 359.87788 * 27 26 25 43 43 H 1.08996 * 110.47508 * 279.56940 * 28 15 14 44 44 H 1.09001 * 110.47103 * 156.95465 * 28 15 14 45 45 H 1.09003 * 110.39052 * 321.37325 * 29 9 7 46 46 H 1.08996 * 110.38903 * 83.76102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1388 -2.5318 0.0005 11 6 -0.4530 -4.0452 -0.0235 12 6 0.8454 -4.6579 -0.5725 13 6 0.8587 -4.6811 -2.1010 14 6 1.0585 -6.1728 -2.4617 15 7 0.5688 -6.9149 -1.2753 16 6 -0.1326 -8.0657 -1.2542 17 8 -0.4124 -8.5876 -0.1924 18 6 -0.5611 -8.6922 -2.5201 19 6 0.2146 -8.5421 -3.6584 20 7 -0.1298 -9.0891 -4.8295 21 1 0.4398 -8.9618 -5.6043 22 6 -1.2794 -9.8293 -4.9469 23 7 -1.8668 -10.4744 -5.9374 24 6 -2.9970 -11.0517 -5.5263 25 6 -3.2143 -10.8070 -4.2085 26 6 -2.1312 -10.0139 -3.7647 27 6 -1.7496 -9.4401 -2.5603 28 6 1.0239 -6.1070 -0.1156 29 6 1.9356 -3.7333 -0.0005 30 1 -0.4849 0.8401 0.0004 31 1 -0.5588 -2.0521 -0.8836 32 1 -0.5568 -2.0807 0.9005 33 1 -0.6586 -4.4128 0.9819 34 1 -1.2905 -4.2552 -0.6886 35 1 -0.0902 -4.3177 -2.4957 36 1 1.6842 -4.0810 -2.4838 37 1 0.4705 -6.4328 -3.3419 38 1 2.1138 -6.3836 -2.6350 39 1 1.1253 -7.9646 -3.5985 40 1 -3.6517 -11.6347 -6.1571 41 1 -4.0496 -11.1504 -3.6162 42 1 -2.3549 -9.5624 -1.6743 43 1 2.0719 -6.3113 0.1036 44 1 0.4040 -6.3105 0.7576 45 1 2.8194 -3.7496 -0.6383 46 1 2.1935 -4.0333 1.0151 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041380899.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:59:54 Heat of formation + Delta-G solvation = 77.855111 kcal Electronic energy + Delta-G solvation = -29146.188687 eV Core-core repulsion = 25230.371055 eV Total energy + Delta-G solvation = -3915.817631 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.59937 -41.39496 -39.86498 -38.91786 -37.22238 -34.95736 -34.43740 -32.15759 -30.90471 -30.79023 -29.92986 -29.62959 -27.29469 -25.94118 -25.30866 -24.21211 -23.55793 -22.32893 -22.09122 -20.49663 -20.09697 -18.96652 -18.68970 -18.47306 -17.59078 -17.32651 -16.85346 -16.69735 -16.48197 -16.17471 -15.76842 -15.66108 -15.49668 -15.16205 -14.48369 -14.31863 -14.12542 -13.93578 -13.78346 -13.53949 -13.46492 -13.19571 -13.09875 -12.93548 -12.82048 -12.71355 -12.44135 -12.26294 -12.01440 -11.87929 -11.78861 -11.50841 -11.32647 -11.26859 -11.14702 -10.66497 -10.59164 -9.79470 -9.22084 -8.86231 -8.84580 -7.81376 -5.15938 -0.83470 -0.03541 1.30281 1.48302 1.49619 1.58055 1.62647 1.85689 2.36557 2.47773 2.52458 3.17175 3.22878 3.37569 3.43929 3.51843 3.64661 3.70775 3.76482 3.91771 4.07820 4.12644 4.25455 4.31878 4.42862 4.54235 4.59274 4.66223 4.71749 4.77958 4.81550 4.90791 4.93060 4.94279 4.98847 5.03456 5.10955 5.24315 5.27316 5.37923 5.49030 5.51126 5.61643 5.69170 5.78127 5.81091 6.09359 6.22755 6.48129 7.00110 7.02387 7.13687 7.82298 8.46754 9.29073 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023107 B = 0.002315 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.469678 B =12093.364823 C =12402.953061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.975 3.025 4 H -0.285 1.285 5 H -0.301 1.301 6 H -0.268 1.268 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.624 5.624 10 C 0.191 3.809 11 C -0.119 4.119 12 C -0.074 4.074 13 C -0.110 4.110 14 C 0.087 3.913 15 N -0.614 5.614 16 C 0.597 3.403 17 O -0.578 6.578 18 C -0.241 4.241 19 C 0.210 3.790 20 N -0.468 5.468 21 H 0.448 0.552 22 C 0.228 3.772 23 N -0.555 5.555 24 C 0.030 3.970 25 C -0.231 4.231 26 C -0.198 4.198 27 C 0.084 3.916 28 C 0.131 3.869 29 C 0.147 3.853 30 H 0.244 0.756 31 H 0.011 0.989 32 H -0.004 1.004 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.236 0.764 40 H 0.176 0.824 41 H 0.151 0.849 42 H 0.143 0.857 43 H 0.099 0.901 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.273 -19.627 -10.637 22.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.263 4.263 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.228 1.228 6 H -0.193 1.193 7 C -0.362 4.362 8 H 0.105 0.895 9 N -0.350 5.350 10 C 0.066 3.934 11 C -0.157 4.157 12 C -0.076 4.076 13 C -0.149 4.149 14 C -0.034 4.034 15 N -0.346 5.346 16 C 0.387 3.613 17 O -0.459 6.459 18 C -0.250 4.250 19 C 0.063 3.937 20 N -0.062 5.062 21 H 0.290 0.710 22 C -0.021 4.021 23 N -0.275 5.275 24 C -0.113 4.113 25 C -0.253 4.253 26 C -0.206 4.206 27 C 0.060 3.940 28 C 0.008 3.992 29 C 0.022 3.978 30 H 0.053 0.947 31 H 0.029 0.971 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.105 0.895 37 H 0.124 0.876 38 H 0.142 0.858 39 H 0.252 0.748 40 H 0.193 0.807 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.117 0.883 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.293 -19.952 -11.170 23.102 hybrid contribution -0.510 1.511 1.014 1.890 sum 2.783 -18.441 -10.156 21.236 Atomic orbital electron populations 1.70203 1.06380 1.24992 1.58830 1.25625 0.96484 1.01012 1.03153 0.85125 0.77650 0.79402 0.77451 1.21194 1.22847 1.19261 1.19471 0.91091 0.83555 1.42037 0.89470 1.44814 1.02062 1.01228 1.86913 1.20867 0.84115 0.91247 0.97203 1.22671 0.97148 0.95617 1.00314 1.21591 0.95468 0.93652 0.96887 1.22281 1.03221 0.96414 0.92947 1.23220 1.02136 0.89824 0.88182 1.48974 1.53436 1.21972 1.10197 1.17389 0.76745 0.79205 0.87936 1.90813 1.58050 1.63853 1.33154 1.19045 1.00787 1.11190 0.94028 1.23306 0.98906 0.89421 0.82052 1.40354 1.17424 1.35822 1.12593 0.71017 1.20626 0.89683 0.98415 0.93343 1.69478 1.10992 1.16467 1.30536 1.22678 0.94007 1.00128 0.94475 1.21696 1.00571 1.05856 0.97205 1.20241 0.99739 1.07221 0.93444 1.21412 0.91613 0.84533 0.96463 1.22085 1.00953 0.87129 0.89025 1.21669 0.94729 0.83754 0.97681 0.94712 0.97095 0.98606 0.92287 0.91286 0.91944 0.89524 0.87625 0.85832 0.74842 0.80657 0.83137 0.83942 0.88348 0.91311 0.92116 0.95964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.60 10.31 21.65 0.22 -56.37 16 2 C -0.07 -3.87 5.49 84.86 0.47 -3.41 16 3 Si 0.97 44.38 29.55 68.60 2.03 46.41 16 4 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.23 -12.25 10.28 84.04 0.86 -11.39 16 8 H 0.09 4.31 7.83 -2.91 -0.02 4.29 16 9 N -0.62 -29.57 3.41 -692.30 -2.36 -31.93 16 10 C 0.19 9.07 5.34 86.80 0.46 9.53 16 11 C -0.12 -4.13 5.83 31.37 0.18 -3.95 16 12 C -0.07 -2.01 0.82 -51.66 -0.04 -2.05 16 13 C -0.11 -2.32 6.28 31.15 0.20 -2.12 16 14 C 0.09 0.93 5.23 86.64 0.45 1.38 16 15 N -0.61 -11.00 3.33 -812.39 -2.71 -13.71 16 16 C 0.60 12.83 7.63 86.71 0.66 13.49 16 17 O -0.58 -17.66 17.03 -3.98 -0.07 -17.72 16 18 C -0.24 -3.94 5.68 -20.18 -0.11 -4.05 16 19 C 0.21 1.59 8.93 84.48 0.75 2.34 16 20 N -0.47 -4.39 5.27 -186.74 -0.98 -5.37 16 21 H 0.45 0.89 8.91 -92.71 -0.83 0.06 16 22 C 0.23 4.62 8.64 135.83 1.17 5.79 16 23 N -0.55 -13.63 11.16 -188.98 -2.11 -15.74 16 24 C 0.03 0.68 11.69 83.88 0.98 1.66 16 25 C -0.23 -5.16 10.99 22.48 0.25 -4.92 16 26 C -0.20 -4.42 6.41 -20.11 -0.13 -4.55 16 27 C 0.08 1.70 9.72 22.94 0.22 1.92 16 28 C 0.13 2.89 6.18 85.99 0.53 3.42 16 29 C 0.15 5.02 6.07 86.47 0.52 5.55 16 30 H 0.24 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.01 0.58 7.39 -2.39 -0.02 0.56 16 32 H 0.00 -0.24 7.50 -2.39 -0.02 -0.26 16 33 H 0.06 2.03 7.73 -2.39 -0.02 2.01 16 34 H 0.07 2.25 7.71 -2.39 -0.02 2.23 16 35 H 0.06 1.51 7.51 -2.39 -0.02 1.49 16 36 H 0.09 1.90 7.55 -2.39 -0.02 1.88 16 37 H 0.11 0.56 5.47 -2.39 -0.01 0.55 16 38 H 0.12 0.41 8.02 -2.39 -0.02 0.39 16 39 H 0.24 -0.38 5.21 -2.91 -0.02 -0.39 16 40 H 0.18 3.06 8.06 -2.91 -0.02 3.04 16 41 H 0.15 2.77 8.06 -2.91 -0.02 2.74 16 42 H 0.14 2.91 7.95 -2.91 -0.02 2.89 16 43 H 0.10 1.80 7.95 -2.39 -0.02 1.78 16 44 H 0.07 1.81 7.39 -2.39 -0.02 1.79 16 45 H 0.06 1.86 7.76 -2.39 -0.02 1.85 16 46 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 Total: -1.00 -82.51 366.94 1.66 -80.85 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: 0.20 Total: 4.94 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 7.44 Total: 8.65 kcal Atomic # 7 Polarization: -115.19 SS G_CDS: -7.94 Total: -123.13 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.07 Total: -17.72 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -82.51 1.66 -80.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041380899.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.704 kcal (2) G-P(sol) polarization free energy of solvation -82.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds