Wall clock time and date at job start Tue Mar 31 2020 22:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31608 * 1 3 3 Si 1.86809 * 119.99756 * 2 1 4 4 H 1.48499 * 109.46818 * 239.99936 * 3 2 1 5 5 H 1.48503 * 109.46899 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47069 * 119.99850 * 3 2 1 7 7 C 1.38813 * 120.00596 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99539 * 0.02562 * 7 2 1 10 10 C 1.47561 * 125.67756 * 0.03510 * 9 7 2 11 11 C 1.55184 * 105.00810 * 203.82812 * 10 9 7 12 12 C 1.53652 * 101.41687 * 324.51061 * 11 10 9 13 13 C 1.53659 * 111.41487 * 155.02672 * 12 11 10 14 14 C 1.55429 * 101.31323 * 87.05860 * 13 12 11 15 15 N 1.47559 * 104.88029 * 35.83113 * 14 13 12 16 16 C 1.34784 * 125.67599 * 156.03224 * 15 14 13 17 17 O 1.21525 * 119.99771 * 179.42056 * 16 15 14 18 18 C 1.48054 * 119.99702 * 359.68939 * 16 15 14 19 19 C 1.39768 * 119.47124 * 180.02562 * 18 16 15 20 20 C 1.38127 * 119.57753 * 179.97438 * 19 18 16 21 21 C 1.39259 * 118.38078 * 359.97438 * 20 19 18 22 22 N 1.37346 * 133.61493 * 179.97438 * 21 20 19 23 23 H 0.97001 * 125.05427 * 0.02562 * 22 21 20 24 24 C 1.36718 * 109.89478 * 180.02562 * 22 21 20 25 25 C 1.34288 * 110.02430 * 359.97438 * 24 22 21 26 26 C 1.41190 * 119.09411 * 0.02562 * 21 20 19 27 27 N 1.32449 * 119.47411 * 359.73525 * 18 16 15 28 28 C 1.47401 * 108.65096 * 335.76810 * 15 14 13 29 29 C 1.47405 * 125.67131 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.01006 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.33430 * 322.71665 * 10 9 7 32 32 H 1.09008 * 110.33102 * 84.84525 * 10 9 7 33 33 H 1.08996 * 111.03496 * 206.47490 * 11 10 9 34 34 H 1.08997 * 111.03011 * 82.54517 * 11 10 9 35 35 H 1.08997 * 111.03893 * 205.29391 * 13 12 11 36 36 H 1.09008 * 111.03126 * 329.18478 * 13 12 11 37 37 H 1.09004 * 110.49188 * 276.94115 * 14 13 12 38 38 H 1.09000 * 110.30428 * 154.62596 * 14 13 12 39 39 H 1.08000 * 120.21041 * 359.95895 * 19 18 16 40 40 H 1.08002 * 120.81213 * 180.02562 * 20 19 18 41 41 H 1.08000 * 124.98787 * 179.97438 * 24 22 21 42 42 H 1.07996 * 126.48689 * 180.02562 * 25 24 22 43 43 H 1.09002 * 109.98574 * 121.71816 * 28 15 14 44 44 H 1.09000 * 109.98983 * 242.98488 * 28 15 14 45 45 H 1.09001 * 109.98934 * 58.57003 * 29 9 7 46 46 H 1.09010 * 109.98664 * 297.26401 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1038 1.6966 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1428 -2.5340 -0.0007 11 6 -0.4075 -3.9379 0.6053 12 6 0.7836 -4.7367 0.0540 13 6 1.1149 -5.9403 0.9500 14 6 0.1669 -7.0250 0.3664 15 7 0.1374 -6.7612 -1.0851 16 6 -0.1576 -7.6633 -2.0421 17 8 -0.1615 -7.3301 -3.2107 18 6 -0.4827 -9.0587 -1.6690 19 6 -0.7864 -9.9853 -2.6704 20 6 -1.0895 -11.2878 -2.3249 21 6 -1.0807 -11.6340 -0.9760 22 7 -1.3266 -12.8017 -0.2960 23 1 -1.5683 -13.6460 -0.7078 24 6 -1.1799 -12.5972 1.0478 25 6 -0.8409 -11.3195 1.2842 26 6 -0.7650 -10.6479 -0.0162 27 7 -0.4754 -9.4105 -0.3921 28 6 0.4778 -5.3455 -1.3139 29 6 1.9329 -3.7311 0.0005 30 1 -0.4851 0.8399 -0.0004 31 1 -0.6007 -1.7620 0.6176 32 1 -0.5278 -2.4807 -1.0192 33 1 -1.3523 -4.3468 0.2472 34 1 -0.3855 -3.9042 1.6945 35 1 2.1602 -6.2307 0.8444 36 1 0.8726 -5.7307 1.9919 37 1 -0.8326 -6.9260 0.7899 38 1 0.5652 -8.0205 0.5625 39 1 -0.7844 -9.6846 -3.7077 40 1 -1.3268 -12.0202 -3.0824 41 1 -1.3166 -13.3523 1.8077 42 1 -0.6591 -10.8714 2.2498 43 1 1.3539 -5.2725 -1.9584 44 1 -0.3655 -4.8288 -1.7722 45 1 2.5731 -3.8506 0.8746 46 1 2.5140 -3.8773 -0.9101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041471915.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:47:53 Heat of formation + Delta-G solvation = 84.302019 kcal Electronic energy + Delta-G solvation = -29157.668540 eV Core-core repulsion = 25242.130468 eV Total energy + Delta-G solvation = -3915.538072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.92601 -40.19515 -38.69174 -37.43418 -35.58425 -33.28625 -32.55072 -30.80859 -30.16366 -29.78376 -28.96970 -28.16156 -25.94786 -24.68105 -23.69419 -22.78821 -22.25226 -21.28682 -20.22593 -19.72613 -18.70877 -18.62961 -17.16560 -17.08506 -16.59824 -15.87356 -15.58325 -15.12198 -15.02761 -14.78721 -14.34895 -14.05303 -13.77749 -13.71470 -13.54595 -13.33318 -13.17032 -12.98283 -12.58687 -12.46907 -12.24303 -11.86746 -11.78472 -11.60789 -11.21022 -11.05203 -10.86652 -10.71938 -10.71034 -10.23996 -10.12425 -9.96437 -9.85367 -9.65197 -9.41886 -9.28061 -8.81619 -8.57472 -8.53030 -8.32230 -6.75768 -5.57932 -2.99182 0.54301 0.74344 2.21321 2.54220 2.81354 3.07960 3.45692 3.49633 3.51064 3.74985 3.80232 4.25927 4.45098 4.55390 4.56546 4.67971 4.85944 4.95534 5.03765 5.16357 5.20589 5.35502 5.50280 5.55922 5.56397 5.62415 5.71555 5.87766 5.96289 6.01769 6.04141 6.09810 6.17103 6.23405 6.27536 6.39011 6.43091 6.46177 6.58773 6.64885 6.74640 6.86244 6.91646 6.94054 7.55447 7.60104 7.69302 7.72685 7.93173 8.28117 8.43177 9.29155 9.89967 10.55825 11.46002 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.028695 B = 0.002303 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.544438 B =12155.237615 C =12690.330137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.221 4.221 8 H 0.076 0.924 9 N -0.604 5.604 10 C 0.153 3.847 11 C -0.130 4.130 12 C -0.081 4.081 13 C -0.122 4.122 14 C 0.106 3.894 15 N -0.594 5.594 16 C 0.581 3.419 17 O -0.541 6.541 18 C 0.081 3.919 19 C -0.097 4.097 20 C -0.093 4.093 21 C 0.062 3.938 22 N -0.590 5.590 23 H 0.419 0.581 24 C 0.065 3.935 25 C -0.182 4.182 26 C 0.086 3.914 27 N -0.411 5.411 28 C 0.127 3.873 29 C 0.151 3.849 30 H 0.252 0.748 31 H 0.105 0.895 32 H 0.012 0.988 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.102 0.898 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.180 0.820 42 H 0.158 0.842 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.030 0.970 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.210 -29.992 2.351 30.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.331 5.331 10 C 0.028 3.972 11 C -0.169 4.169 12 C -0.082 4.082 13 C -0.160 4.160 14 C -0.017 4.017 15 N -0.326 5.326 16 C 0.368 3.632 17 O -0.419 6.419 18 C -0.066 4.066 19 C -0.119 4.119 20 C -0.122 4.122 21 C -0.048 4.048 22 N -0.194 5.194 23 H 0.256 0.744 24 C -0.063 4.063 25 C -0.207 4.207 26 C -0.050 4.050 27 N -0.122 5.122 28 C 0.006 3.994 29 C 0.025 3.975 30 H 0.063 0.937 31 H 0.123 0.877 32 H 0.030 0.970 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.120 0.880 39 H 0.171 0.829 40 H 0.156 0.844 41 H 0.197 0.803 42 H 0.176 0.824 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.047 0.953 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.089 -29.102 2.317 29.479 hybrid contribution 0.099 -0.250 -0.851 0.893 sum -3.990 -29.352 1.465 29.658 Atomic orbital electron populations 1.69789 1.04863 1.24798 1.57704 1.24777 0.95711 0.97655 1.02606 0.86161 0.78383 0.83158 0.77845 1.21270 1.21641 1.21218 1.19030 0.90457 0.82492 1.42918 0.90575 1.44628 1.01916 0.99637 1.86880 1.21990 0.84569 0.92416 0.98219 1.22896 0.95197 0.98678 1.00090 1.21534 0.98446 0.94760 0.93495 1.22774 0.99442 0.94324 0.99483 1.22774 0.99841 1.00292 0.78749 1.48506 1.66050 1.10433 1.07605 1.17409 0.77916 0.83331 0.84497 1.90787 1.53935 1.79384 1.17758 1.20942 1.02206 0.94831 0.88626 1.21741 0.97114 0.91635 1.01376 1.20427 1.02523 0.96892 0.92328 1.19288 1.02939 0.88064 0.94546 1.41621 1.61301 1.10343 1.06116 0.74361 1.21971 1.01861 0.98099 0.84322 1.21630 1.10458 0.92518 0.96094 1.20160 1.02356 0.88605 0.93853 1.67250 1.10297 1.17056 1.17611 1.21920 1.01138 0.79097 0.97285 1.21098 0.92850 0.85422 0.98121 0.93746 0.87736 0.97038 0.92344 0.91727 0.90948 0.89822 0.91557 0.88004 0.82937 0.84371 0.80297 0.82408 0.91104 0.90850 0.95255 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.39 10.09 55.49 0.56 -26.83 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 3 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 8 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 9 N -0.60 -15.76 3.41 -170.40 -0.58 -16.34 16 10 C 0.15 3.78 5.85 -2.30 -0.01 3.77 16 11 C -0.13 -2.51 5.85 -25.24 -0.15 -2.65 16 12 C -0.08 -1.45 0.61 -154.02 -0.09 -1.55 16 13 C -0.12 -1.75 5.94 -25.10 -0.15 -1.90 16 14 C 0.11 1.48 5.89 -2.17 -0.01 1.47 16 15 N -0.59 -9.75 3.34 -171.73 -0.57 -10.32 16 16 C 0.58 9.76 7.84 -12.23 -0.10 9.67 16 17 O -0.54 -10.48 16.63 5.34 0.09 -10.39 16 18 C 0.08 1.13 6.72 -83.00 -0.56 0.58 16 19 C -0.10 -1.09 9.60 -39.05 -0.37 -1.46 16 20 C -0.09 -0.79 10.18 -39.24 -0.40 -1.19 16 21 C 0.06 0.55 7.29 -83.90 -0.61 -0.06 16 22 N -0.59 -3.07 6.05 -10.58 -0.06 -3.13 16 23 H 0.42 0.78 8.96 -40.82 -0.37 0.42 16 24 C 0.06 0.31 11.81 -16.77 -0.20 0.11 16 25 C -0.18 -1.40 11.08 -37.62 -0.42 -1.82 16 26 C 0.09 0.94 7.52 -83.10 -0.62 0.32 16 27 N -0.41 -5.37 6.61 -6.43 -0.04 -5.41 16 28 C 0.13 2.30 6.02 -3.65 -0.02 2.28 16 29 C 0.15 3.22 6.51 -3.65 -0.02 3.19 16 30 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.10 2.90 5.89 -51.93 -0.31 2.60 16 32 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 33 H 0.06 1.05 7.94 -51.93 -0.41 0.64 16 34 H 0.06 1.20 7.82 -51.93 -0.41 0.79 16 35 H 0.07 0.99 8.09 -51.93 -0.42 0.58 16 36 H 0.08 1.11 7.78 -51.92 -0.40 0.71 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.10 1.36 5.86 -51.93 -0.30 1.05 16 39 H 0.15 1.61 7.61 -52.49 -0.40 1.22 16 40 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.18 0.14 8.06 -52.49 -0.42 -0.28 16 42 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 43 H 0.07 1.34 7.44 -51.93 -0.39 0.95 16 44 H 0.07 1.44 7.78 -51.93 -0.40 1.04 16 45 H 0.03 0.61 7.86 -51.93 -0.41 0.20 16 46 H 0.02 0.50 7.41 -51.92 -0.38 0.12 16 LS Contribution 368.52 15.07 5.55 5.55 Total: -1.00 -35.18 368.52 -10.34 -45.52 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -6.26 Total: 0.01 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.99 Total: 3.89 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: -0.70 Total: -62.04 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.18 -10.34 -45.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041471915.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.821 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds