Wall clock time and date at job start Tue Mar 31 2020 23:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86797 * 120.00242 * 2 1 4 4 H 1.48502 * 109.47303 * 270.00051 * 3 2 1 5 5 H 1.48497 * 109.46954 * 29.99856 * 3 2 1 6 6 H 1.48501 * 109.47219 * 149.99692 * 3 2 1 7 7 C 1.38815 * 120.00195 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00328 * 180.02562 * 7 2 1 9 9 N 1.36946 * 119.99806 * 359.97438 * 7 2 1 10 10 C 1.47118 * 125.76769 * 0.02723 * 9 7 2 11 11 C 1.54560 * 107.25605 * 177.37405 * 10 9 7 12 12 C 1.54420 * 102.44831 * 338.33796 * 11 10 9 13 13 H 1.09009 * 110.71670 * 279.42694 * 12 11 10 14 14 C 1.48209 * 125.76496 * 180.02562 * 9 7 2 15 15 H 1.09000 * 112.30659 * 326.57110 * 14 9 7 16 16 C 1.53011 * 107.11396 * 89.16983 * 14 9 7 17 17 C 1.52732 * 110.80194 * 168.07126 * 16 14 9 18 18 C 1.53917 * 108.35244 * 296.10521 * 17 16 14 19 19 N 1.45123 * 111.61192 * 156.57739 * 12 11 10 20 20 C 1.34766 * 119.58200 * 111.34035 * 19 12 11 21 21 O 1.21588 * 120.00426 * 184.00290 * 20 19 12 22 22 C 1.47583 * 120.00222 * 3.99984 * 20 19 12 23 23 C 1.40081 * 120.36147 * 128.92292 * 22 20 19 24 24 N 1.31160 * 121.12317 * 180.02562 * 23 22 20 25 25 C 1.33356 * 121.67809 * 0.02562 * 24 23 22 26 26 C 1.41857 * 133.17326 * 179.97438 * 25 24 23 27 27 C 1.34457 * 107.95886 * 180.02562 * 26 25 24 28 28 N 1.36531 * 109.71606 * 359.97438 * 27 26 25 29 29 H 0.97001 * 125.59674 * 180.02562 * 28 27 26 30 30 C 1.37857 * 108.80622 * 359.97438 * 28 27 26 31 31 C 1.38731 * 133.56555 * 179.97438 * 30 28 27 32 32 H 0.97000 * 120.00276 * 359.97438 * 1 2 3 33 33 H 1.08999 * 109.88203 * 296.79180 * 10 9 7 34 34 H 1.09007 * 109.88117 * 57.96470 * 10 9 7 35 35 H 1.08997 * 110.81403 * 220.09207 * 11 10 9 36 36 H 1.09001 * 110.80717 * 96.56894 * 11 10 9 37 37 H 1.09001 * 109.20899 * 288.41597 * 16 14 9 38 38 H 1.09001 * 109.21355 * 47.73009 * 16 14 9 39 39 H 1.09002 * 109.64166 * 55.91768 * 17 16 14 40 40 H 1.09006 * 109.64091 * 176.32869 * 17 16 14 41 41 H 1.09000 * 109.99473 * 298.83630 * 18 17 16 42 42 H 1.08997 * 109.90479 * 177.73830 * 18 17 16 43 43 H 1.08002 * 119.43565 * 359.74973 * 23 22 20 44 44 H 1.07999 * 126.01670 * 0.02562 * 26 25 24 45 45 H 1.08002 * 125.13897 * 179.97438 * 27 26 25 46 46 H 1.07997 * 120.91034 * 0.02793 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 -0.1382 -2.5360 0.0017 11 6 -0.4462 -4.0491 -0.0646 12 6 0.8582 -4.6289 -0.6536 13 1 0.8810 -4.5044 -1.7364 14 6 1.9339 -3.7396 0.0028 15 1 2.8711 -3.7719 -0.5527 16 6 2.1380 -4.1402 1.4654 17 6 2.4839 -5.6235 1.5783 18 6 1.2816 -6.4413 1.0735 19 7 1.0225 -6.0298 -0.3123 20 6 0.9301 -6.9651 -1.2782 21 8 0.9938 -8.1447 -0.9903 22 6 0.7516 -6.5577 -2.6854 23 6 1.5923 -7.0687 -3.6826 24 7 1.4474 -6.7164 -4.9376 25 6 0.4990 -5.8603 -5.3197 26 6 0.1286 -5.3202 -6.5780 27 6 -0.9133 -4.4929 -6.3837 28 7 -1.2407 -4.4680 -5.0585 29 1 -1.9579 -3.9476 -4.6637 30 6 -0.3856 -5.3048 -4.3736 31 6 -0.2592 -5.6576 -3.0379 32 1 -0.4850 0.8400 0.0004 33 1 -0.5535 -2.1127 0.9163 34 1 -0.5617 -2.0330 -0.8678 35 1 -1.2902 -4.2440 -0.7262 36 1 -0.6330 -4.4503 0.9316 37 1 2.9500 -3.5492 1.8891 38 1 1.2225 -3.9420 2.0227 39 1 3.3610 -5.8426 0.9693 40 1 2.6889 -5.8738 2.6192 41 1 0.4063 -6.2365 1.6900 42 1 1.5167 -7.5051 1.1055 43 1 2.3760 -7.7611 -3.4126 44 1 0.6006 -5.5356 -7.5253 45 1 -1.4153 -3.9327 -7.1587 46 1 -0.9220 -5.2470 -2.2905 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049539691.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:49 Heat of formation + Delta-G solvation = 77.628010 kcal Electronic energy + Delta-G solvation = -30610.469903 eV Core-core repulsion = 26694.642424 eV Total energy + Delta-G solvation = -3915.827479 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85796 -40.44530 -38.36265 -37.44096 -35.02076 -33.67104 -32.22242 -32.14964 -30.22990 -29.74728 -29.03063 -28.22201 -25.15107 -24.50536 -23.84578 -23.15281 -21.93263 -20.99400 -20.59263 -20.06687 -18.71402 -17.99021 -17.39795 -16.94973 -16.59543 -15.93018 -15.66644 -15.04655 -14.89730 -14.72760 -14.53559 -14.21782 -13.72917 -13.69805 -13.44815 -13.20402 -13.12537 -12.77263 -12.56940 -12.56183 -12.40075 -12.14776 -11.99820 -11.48021 -11.10012 -11.03311 -10.87335 -10.72460 -10.55800 -10.38689 -10.27132 -10.15692 -9.99327 -9.71917 -9.68298 -9.28755 -8.72789 -8.54225 -8.36111 -8.16707 -6.97086 -5.81899 -3.15676 0.63653 1.29232 2.39292 2.75435 2.88811 3.16738 3.33439 3.39580 3.40529 3.89706 4.20472 4.37750 4.49188 4.65318 4.81884 4.94982 5.01842 5.11330 5.15717 5.18790 5.26273 5.34382 5.43941 5.45580 5.54529 5.58693 5.65290 5.76270 5.80637 5.95772 6.04840 6.07465 6.10338 6.16301 6.24618 6.28095 6.34850 6.36598 6.44337 6.69794 6.78717 6.82373 6.96610 7.23295 7.42850 7.43761 7.53063 7.69689 7.99304 8.11628 8.22686 9.10261 9.69740 10.34668 11.29592 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009515 B = 0.004708 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2941.887567 B = 5946.444404 C = 8028.166919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.078 0.922 9 N -0.597 5.597 10 C 0.182 3.818 11 C -0.156 4.156 12 C 0.115 3.885 13 H 0.099 0.901 14 C 0.157 3.843 15 H 0.061 0.939 16 C -0.130 4.130 17 C -0.132 4.132 18 C 0.113 3.887 19 N -0.584 5.584 20 C 0.567 3.433 21 O -0.541 6.541 22 C -0.167 4.167 23 C 0.146 3.854 24 N -0.456 5.456 25 C 0.110 3.890 26 C -0.202 4.202 27 C 0.081 3.919 28 N -0.579 5.579 29 H 0.424 0.576 30 C 0.032 3.968 31 C -0.039 4.039 32 H 0.252 0.748 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.163 0.837 44 H 0.153 0.847 45 H 0.180 0.820 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 -10.301 -6.804 12.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.354 4.354 8 H 0.096 0.904 9 N -0.321 5.321 10 C 0.057 3.943 11 C -0.195 4.195 12 C 0.010 3.990 13 H 0.117 0.883 14 C 0.048 3.952 15 H 0.079 0.921 16 C -0.170 4.170 17 C -0.171 4.171 18 C -0.009 4.009 19 N -0.314 5.314 20 C 0.355 3.645 21 O -0.420 6.420 22 C -0.174 4.174 23 C -0.024 4.024 24 N -0.163 5.163 25 C -0.021 4.021 26 C -0.228 4.228 27 C -0.051 4.051 28 N -0.181 5.181 29 H 0.262 0.738 30 C -0.077 4.077 31 C -0.068 4.068 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.110 0.890 43 H 0.180 0.820 44 H 0.170 0.830 45 H 0.197 0.803 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.762 -10.861 -7.290 13.369 hybrid contribution -0.561 1.786 0.917 2.085 sum -3.323 -9.075 -6.373 11.577 Atomic orbital electron populations 1.69932 1.04879 1.25094 1.57170 1.24766 0.95698 0.97598 1.02150 0.86136 0.78681 0.83467 0.77597 1.21615 1.21672 1.20630 1.19047 0.90475 0.82132 1.43706 0.90377 1.44679 1.01300 0.99290 1.86864 1.21160 0.84512 0.87318 1.01310 1.23216 0.95727 1.00238 1.00289 1.22171 0.97358 0.78795 1.00696 0.88284 1.21343 0.94436 0.85929 0.93484 0.92096 1.22116 1.02003 0.93420 0.99471 1.22005 0.97538 0.96738 1.00840 1.21819 0.98036 1.00094 0.80937 1.47598 1.69211 1.06709 1.07931 1.18043 0.76483 0.85433 0.84558 1.90766 1.51235 1.16989 1.82994 1.20547 1.00124 1.01471 0.95227 1.22579 0.97084 0.96516 0.86183 1.67217 1.18916 1.12068 1.18110 1.19169 0.92858 0.96068 0.93974 1.20541 1.01271 1.03961 0.96994 1.22050 0.97885 1.00068 0.85048 1.41771 1.29993 1.39366 1.06961 0.73799 1.18936 0.96195 0.98369 0.94198 1.20767 0.97911 0.95033 0.93094 0.93747 0.93889 0.93172 0.92413 0.91574 0.92061 0.91862 0.91762 0.91235 0.91374 0.89045 0.81961 0.82978 0.80268 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.62 10.33 55.49 0.57 -25.04 16 2 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 3 Si 0.91 21.33 29.55 -169.99 -5.02 16.31 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -5.91 10.29 -15.05 -0.15 -6.06 16 8 H 0.08 2.01 7.83 -52.48 -0.41 1.59 16 9 N -0.60 -13.91 2.91 -162.18 -0.47 -14.38 16 10 C 0.18 4.01 5.19 -2.88 -0.01 4.00 16 11 C -0.16 -2.63 5.87 -25.17 -0.15 -2.77 16 12 C 0.11 1.90 2.25 -67.28 -0.15 1.75 16 13 H 0.10 1.71 4.73 -51.92 -0.25 1.47 16 14 C 0.16 2.99 3.60 -66.34 -0.24 2.75 16 15 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.13 -2.21 5.10 -26.86 -0.14 -2.34 16 17 C -0.13 -1.81 6.12 -26.39 -0.16 -1.97 16 18 C 0.11 1.56 6.17 -3.36 -0.02 1.54 16 19 N -0.58 -8.92 2.73 -165.87 -0.45 -9.37 16 20 C 0.57 9.08 7.20 -12.45 -0.09 8.99 16 21 O -0.54 -9.78 16.40 5.29 0.09 -9.70 16 22 C -0.17 -2.52 4.91 -104.79 -0.51 -3.04 16 23 C 0.15 2.18 10.88 -17.15 -0.19 1.99 16 24 N -0.46 -7.10 10.40 -10.71 -0.11 -7.21 16 25 C 0.11 1.60 7.32 -84.80 -0.62 0.98 16 26 C -0.20 -2.29 10.84 -39.53 -0.43 -2.71 16 27 C 0.08 0.71 11.82 -16.80 -0.20 0.51 16 28 N -0.58 -5.89 6.14 -10.66 -0.07 -5.96 16 29 H 0.42 3.24 8.96 -40.82 -0.37 2.87 16 30 C 0.03 0.44 7.27 -83.96 -0.61 -0.17 16 31 C -0.04 -0.56 7.52 -38.79 -0.29 -0.85 16 32 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.04 1.06 7.60 -51.93 -0.39 0.67 16 34 H 0.05 1.23 7.30 -51.92 -0.38 0.85 16 35 H 0.06 0.86 6.58 -51.93 -0.34 0.52 16 36 H 0.07 1.08 6.78 -51.93 -0.35 0.73 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.90 7.51 -51.93 -0.39 0.51 16 42 H 0.09 1.26 6.97 -51.93 -0.36 0.89 16 43 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 45 H 0.18 0.81 8.06 -52.49 -0.42 0.38 16 46 H 0.14 1.86 5.45 -52.49 -0.29 1.57 16 LS Contribution 359.50 15.07 5.42 5.42 Total: -1.00 -32.03 359.50 -10.10 -42.14 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.99 Total: 5.46 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -4.06 Total: 2.34 kcal Atomic # 7 Polarization: -61.44 SS G_CDS: -0.53 Total: -61.97 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.03 -10.10 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049539691.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.765 kcal (2) G-P(sol) polarization free energy of solvation -32.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds