Wall clock time and date at job start Tue Mar 31 2020 23:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99993 * 2 1 4 4 H 1.48494 * 109.47273 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47341 * 300.00192 * 3 2 1 6 6 H 1.48503 * 109.47162 * 59.99753 * 3 2 1 7 7 C 1.38814 * 120.00131 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99882 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99951 * 359.97438 * 7 2 1 10 10 C 1.48379 * 126.56007 * 0.02562 * 9 7 2 11 11 C 1.55474 * 106.97578 * 174.47997 * 10 9 7 12 12 C 1.53435 * 101.66949 * 337.40204 * 11 10 9 13 13 H 1.09000 * 111.14467 * 282.00860 * 12 11 10 14 14 C 1.45019 * 126.56083 * 180.02562 * 9 7 2 15 15 H 1.09003 * 108.26229 * 96.08250 * 14 9 7 16 16 C 1.51082 * 119.18800 * 331.21043 * 14 9 7 17 17 C 1.53873 * 107.40243 * 176.07586 * 16 14 9 18 18 C 1.52418 * 110.98176 * 57.98042 * 17 16 14 19 19 N 1.45719 * 117.00625 * 152.98164 * 12 11 10 20 20 C 1.34785 * 122.22783 * 9.60840 * 19 12 11 21 21 O 1.21606 * 120.00113 * 354.61655 * 20 19 12 22 22 C 1.47378 * 119.99740 * 174.62225 * 20 19 12 23 23 C 1.39259 * 120.83682 * 315.03420 * 22 20 19 24 24 N 1.31906 * 120.97284 * 179.97438 * 23 22 20 25 25 C 1.31919 * 122.71717 * 0.02562 * 24 23 22 26 26 C 1.38693 * 120.79632 * 0.02562 * 25 24 23 27 27 N 1.37744 * 134.30282 * 180.02562 * 26 25 24 28 28 H 0.97001 * 125.56334 * 359.95520 * 27 26 25 29 29 C 1.36569 * 108.87582 * 179.27066 * 27 26 25 30 30 C 1.34646 * 109.66043 * 0.59838 * 29 27 26 31 31 C 1.40980 * 118.83952 * 359.70187 * 26 25 24 32 32 H 0.96997 * 119.99617 * 0.02562 * 1 2 3 33 33 H 1.09004 * 109.96029 * 55.10302 * 10 9 7 34 34 H 1.08994 * 109.99542 * 293.87875 * 10 9 7 35 35 H 1.09003 * 110.98513 * 219.30906 * 11 10 9 36 36 H 1.08999 * 110.98765 * 95.49811 * 11 10 9 37 37 H 1.08999 * 109.88284 * 295.56583 * 16 14 9 38 38 H 1.09000 * 109.88708 * 56.57807 * 16 14 9 39 39 H 1.09001 * 109.06497 * 177.49188 * 17 16 14 40 40 H 1.08994 * 109.06748 * 296.43252 * 17 16 14 41 41 H 1.08998 * 108.42824 * 190.30469 * 18 17 16 42 42 H 1.09003 * 110.18107 * 70.90066 * 18 17 16 43 43 H 1.08007 * 119.51012 * 0.02562 * 23 22 20 44 44 H 1.08000 * 119.59905 * 179.97438 * 25 24 23 45 45 H 1.08008 * 125.16829 * 180.02562 * 29 27 26 46 46 H 1.07998 * 126.09093 * 179.45990 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1484 -2.5576 -0.0005 11 6 -0.4303 -4.0799 -0.1436 12 6 0.8713 -4.5775 -0.7858 13 1 0.8952 -4.3514 -1.8518 14 6 1.9025 -3.7186 -0.0005 15 1 1.9378 -4.0756 1.0288 16 6 3.2562 -3.9348 -0.6358 17 6 3.6472 -5.4037 -0.3971 18 6 2.6019 -6.3482 -0.9790 19 7 1.2447 -5.9637 -0.5358 20 6 0.4085 -6.8372 0.0593 21 8 -0.6605 -6.4551 0.4953 22 6 0.7896 -8.2556 0.1817 23 6 1.3445 -8.9412 -0.8960 24 7 1.6871 -10.2105 -0.7893 25 6 1.5290 -10.9005 0.3238 26 6 0.9840 -10.3098 1.4541 27 7 0.6997 -10.7505 2.7279 28 1 0.8570 -11.6471 3.0629 29 6 0.1742 -9.7149 3.4467 30 6 0.0976 -8.6175 2.6703 31 6 0.6056 -8.9530 1.3970 32 1 -0.4849 0.8400 -0.0004 33 1 -0.5851 -2.0178 -0.8409 34 1 -0.5661 -2.1883 0.9360 35 1 -1.2825 -4.2592 -0.7991 36 1 -0.5858 -4.5414 0.8315 37 1 3.1996 -3.7354 -1.7059 38 1 3.9917 -3.2757 -0.1745 39 1 4.6021 -5.6016 -0.8841 40 1 3.7531 -5.5745 0.6741 41 1 2.8189 -7.3583 -0.6317 42 1 2.6417 -6.3281 -2.0681 43 1 1.4974 -8.4257 -1.8327 44 1 1.8269 -11.9382 0.3551 45 1 -0.1412 -9.7705 4.4781 46 1 -0.2850 -7.6526 2.9686 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049569568.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:35 Heat of formation + Delta-G solvation = 85.364829 kcal Electronic energy + Delta-G solvation = -30257.370255 eV Core-core repulsion = 26341.878270 eV Total energy + Delta-G solvation = -3915.491986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02883 -40.24013 -38.33619 -37.51638 -35.40198 -32.92114 -32.57792 -32.02038 -30.28024 -29.99122 -28.73681 -28.12430 -25.36658 -24.42821 -23.68362 -22.87592 -21.50977 -21.41106 -20.74382 -19.79362 -19.34715 -18.10357 -17.31502 -16.75517 -16.23275 -15.68778 -15.52681 -15.09059 -14.94840 -14.84980 -14.44055 -14.27121 -14.10467 -13.67986 -13.49732 -13.24551 -12.94600 -12.85540 -12.61842 -12.40321 -12.25992 -12.13113 -11.74923 -11.51589 -11.08184 -10.84669 -10.69674 -10.60216 -10.44328 -10.29197 -10.04070 -9.98689 -9.93108 -9.78260 -9.57110 -8.93124 -8.88696 -8.54118 -8.22395 -8.11180 -6.77937 -5.66088 -3.00031 0.40967 1.20055 2.45487 2.66370 2.91776 3.16515 3.42658 3.47810 3.50441 3.73117 4.18352 4.38198 4.50242 4.53299 4.65129 4.79726 4.91669 4.98194 5.09163 5.19409 5.33850 5.41105 5.45482 5.49743 5.58719 5.65900 5.72729 5.82961 5.91379 5.95818 6.05775 6.14401 6.19938 6.29685 6.33756 6.36067 6.45550 6.60411 6.61341 6.77307 6.84131 6.95250 7.06454 7.24296 7.62935 7.68633 7.73425 7.75886 7.88942 8.29378 8.43534 9.23704 9.87565 10.56144 11.46015 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021000 B = 0.003020 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.013955 B = 9268.295506 C = 9760.009049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.224 4.224 8 H 0.079 0.921 9 N -0.593 5.593 10 C 0.173 3.827 11 C -0.132 4.132 12 C 0.116 3.884 13 H 0.081 0.919 14 C 0.159 3.841 15 H 0.018 0.982 16 C -0.116 4.116 17 C -0.128 4.128 18 C 0.105 3.895 19 N -0.592 5.592 20 C 0.566 3.434 21 O -0.520 6.520 22 C -0.126 4.126 23 C 0.090 3.910 24 N -0.471 5.471 25 C 0.127 3.873 26 C 0.023 3.977 27 N -0.578 5.578 28 H 0.421 0.579 29 C 0.068 3.932 30 C -0.193 4.193 31 C -0.028 4.028 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.039 0.961 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.161 0.839 44 H 0.155 0.845 45 H 0.179 0.821 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.271 -24.193 3.022 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.353 4.353 8 H 0.097 0.903 9 N -0.318 5.318 10 C 0.049 3.951 11 C -0.171 4.171 12 C 0.012 3.988 13 H 0.099 0.901 14 C 0.050 3.950 15 H 0.035 0.965 16 C -0.155 4.155 17 C -0.167 4.167 18 C -0.017 4.017 19 N -0.325 5.325 20 C 0.353 3.647 21 O -0.397 6.397 22 C -0.132 4.132 23 C -0.062 4.062 24 N -0.179 5.179 25 C -0.039 4.039 26 C -0.087 4.087 27 N -0.181 5.181 28 H 0.259 0.741 29 C -0.062 4.062 30 C -0.218 4.218 31 C -0.040 4.040 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.179 0.821 44 H 0.172 0.828 45 H 0.196 0.804 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.000 -24.204 2.552 24.664 hybrid contribution 0.203 0.928 0.897 1.307 sum 4.203 -23.276 3.449 23.902 Atomic orbital electron populations 1.69962 1.04858 1.24871 1.56992 1.24802 0.95668 0.97588 1.02389 0.86081 0.78689 0.84008 0.77200 1.20560 1.21815 1.21840 1.19037 0.90352 0.82226 1.43641 0.90328 1.44099 1.01825 0.99346 1.86524 1.21729 0.83610 0.88737 1.01058 1.23014 0.94430 0.97955 1.01692 1.22414 0.98811 0.78219 0.99319 0.90110 1.20756 0.91395 0.87140 0.95719 0.96499 1.21445 0.98527 0.94219 1.01285 1.21848 0.97694 0.95743 1.01431 1.21877 0.81546 0.99028 0.99296 1.47921 1.14454 1.11136 1.58971 1.17894 0.84226 0.84423 0.78130 1.90792 1.23256 1.78190 1.47457 1.20511 1.02914 0.95506 0.94280 1.22674 0.95371 0.90121 0.98009 1.67583 1.17647 1.08272 1.24387 1.21850 0.96466 0.99700 0.85896 1.19314 1.06056 0.95135 0.88205 1.41752 1.54561 1.12768 1.09037 0.74095 1.22155 0.99337 0.86740 0.97972 1.20803 1.08527 1.00270 0.92198 1.18159 0.99539 0.92180 0.94110 0.93818 0.92608 0.94279 0.92190 0.89586 0.91723 0.91535 0.90974 0.91733 0.90208 0.91039 0.82145 0.82755 0.80401 0.82809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.38 10.46 55.49 0.58 -26.80 16 2 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.22 -6.22 9.94 -15.06 -0.15 -6.37 16 8 H 0.08 2.09 7.30 -52.49 -0.38 1.71 16 9 N -0.59 -15.32 3.35 -163.29 -0.55 -15.87 16 10 C 0.17 4.41 5.47 -1.69 -0.01 4.40 16 11 C -0.13 -2.85 5.15 -25.19 -0.13 -2.98 16 12 C 0.12 2.24 3.30 -66.80 -0.22 2.02 16 13 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 14 C 0.16 3.36 2.58 -68.37 -0.18 3.18 16 15 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 16 C -0.12 -2.01 5.42 -27.24 -0.15 -2.16 16 17 C -0.13 -1.70 5.94 -26.57 -0.16 -1.86 16 18 C 0.11 1.33 5.09 -3.60 -0.02 1.31 16 19 N -0.59 -9.57 2.90 -165.44 -0.48 -10.05 16 20 C 0.57 9.58 7.26 -12.54 -0.09 9.48 16 21 O -0.52 -10.41 13.64 5.27 0.07 -10.34 16 22 C -0.13 -1.79 5.04 -104.63 -0.53 -2.32 16 23 C 0.09 1.10 8.71 -17.14 -0.15 0.95 16 24 N -0.47 -5.46 10.30 -12.85 -0.13 -5.60 16 25 C 0.13 1.22 11.21 -17.35 -0.19 1.02 16 26 C 0.02 0.23 7.31 -84.00 -0.61 -0.38 16 27 N -0.58 -4.01 6.13 -10.63 -0.07 -4.07 16 28 H 0.42 1.29 8.96 -40.82 -0.37 0.93 16 29 C 0.07 0.53 11.84 -16.71 -0.20 0.33 16 30 C -0.19 -2.32 10.56 -39.76 -0.42 -2.74 16 31 C -0.03 -0.37 6.02 -106.59 -0.64 -1.01 16 32 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.06 1.54 7.19 -51.93 -0.37 1.17 16 34 H 0.04 1.09 7.81 -51.93 -0.41 0.69 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.94 6.09 -51.93 -0.32 1.62 16 37 H 0.06 1.11 8.12 -51.93 -0.42 0.69 16 38 H 0.07 1.21 7.70 -51.93 -0.40 0.81 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.90 5.18 -51.93 -0.27 0.64 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.16 1.73 7.07 -52.48 -0.37 1.36 16 44 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 45 H 0.18 0.71 8.06 -52.48 -0.42 0.29 16 46 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 360.67 15.07 5.44 5.44 Total: -1.00 -34.92 360.67 -10.34 -45.26 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.24 Total: 2.27 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -3.94 Total: 2.55 kcal Atomic # 7 Polarization: -61.75 SS G_CDS: -0.64 Total: -62.39 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.07 Total: -10.34 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.92 -10.34 -45.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049569568.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.630 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds