Wall clock time and date at job start Tue Mar 31 2020 23:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47261 * 299.99901 * 3 2 1 6 6 H 1.48504 * 109.47495 * 59.99832 * 3 2 1 7 7 C 1.38812 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99337 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.46879 * 125.58448 * 359.97438 * 9 7 2 11 11 C 1.54064 * 107.70629 * 177.04736 * 10 9 7 12 12 C 1.54570 * 103.66888 * 342.84333 * 11 10 9 13 13 H 1.08998 * 108.78637 * 273.79531 * 12 11 10 14 14 C 1.47655 * 125.57616 * 179.97438 * 9 7 2 15 15 H 1.08992 * 110.57369 * 322.56963 * 14 9 7 16 16 C 1.52929 * 107.99252 * 83.59474 * 14 9 7 17 17 C 1.52934 * 109.79591 * 171.83960 * 16 14 9 18 18 C 1.53050 * 108.49219 * 294.00755 * 17 16 14 19 19 N 1.44188 * 111.47668 * 153.29038 * 12 11 10 20 20 C 1.34779 * 117.76598 * 93.66094 * 19 12 11 21 21 O 1.21606 * 120.00026 * 187.89580 * 20 19 12 22 22 C 1.47379 * 119.99531 * 8.17026 * 20 19 12 23 23 C 1.39250 * 120.83462 * 324.97980 * 22 20 19 24 24 N 1.31919 * 120.96738 * 179.82893 * 23 22 20 25 25 C 1.31912 * 122.71548 * 0.43008 * 24 23 22 26 26 C 1.38686 * 120.79907 * 359.80485 * 25 24 23 27 27 N 1.37753 * 134.30757 * 179.97438 * 26 25 24 28 28 H 0.97008 * 125.55948 * 0.02881 * 27 26 25 29 29 C 1.36562 * 108.88216 * 180.02562 * 27 26 25 30 30 C 1.34647 * 109.65976 * 359.97438 * 29 27 26 31 31 C 1.40986 * 118.84247 * 359.97438 * 26 25 24 32 32 H 0.97006 * 120.00319 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.80883 * 296.58972 * 10 9 7 34 34 H 1.08997 * 109.81580 * 57.43271 * 10 9 7 35 35 H 1.09000 * 110.57249 * 101.42964 * 11 10 9 36 36 H 1.08998 * 110.57069 * 224.15092 * 11 10 9 37 37 H 1.09002 * 109.41276 * 51.73553 * 16 14 9 38 38 H 1.09004 * 109.41594 * 291.94134 * 16 14 9 39 39 H 1.09000 * 109.63255 * 174.31012 * 17 16 14 40 40 H 1.08996 * 109.80125 * 53.80535 * 17 16 14 41 41 H 1.09000 * 109.46248 * 293.77026 * 18 17 16 42 42 H 1.09001 * 109.44086 * 173.81735 * 18 17 16 43 43 H 1.08003 * 119.51865 * 0.02644 * 23 22 20 44 44 H 1.08003 * 119.60003 * 179.78045 * 25 24 23 45 45 H 1.07999 * 125.16696 * 180.02562 * 29 27 26 46 46 H 1.07993 * 126.08536 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1363 -2.5309 0.0005 11 6 -0.4601 -4.0352 -0.0751 12 6 0.8639 -4.6700 -0.5579 13 1 0.8918 -4.6382 -1.6471 14 6 1.9360 -3.7324 0.0005 15 1 2.8321 -3.7462 -0.6197 16 6 2.2790 -4.0955 1.4460 17 6 2.7258 -5.5562 1.5211 18 6 1.5332 -6.4474 1.1663 19 7 0.9840 -6.0384 -0.1196 20 6 0.5651 -7.0057 -0.9594 21 8 0.5126 -8.1598 -0.5797 22 6 0.1763 -6.6656 -2.3397 23 6 -0.4561 -5.4586 -2.6263 24 7 -0.8022 -5.1500 -3.8613 25 6 -0.5836 -5.9531 -4.8847 26 6 0.0360 -7.1807 -4.7044 27 7 0.3932 -8.2111 -5.5460 28 1 0.2469 -8.2330 -6.5047 29 6 0.9870 -9.1967 -4.8106 30 6 1.0255 -8.8341 -3.5144 31 6 0.4310 -7.5588 -3.4049 32 1 -0.4851 0.8401 -0.0004 33 1 -0.5486 -2.1100 0.9176 34 1 -0.5577 -2.0174 -0.8637 35 1 -0.7333 -4.4181 0.9082 36 1 -1.2600 -4.2192 -0.7923 37 1 1.3995 -3.9527 2.0739 38 1 3.0842 -3.4516 1.8000 39 1 3.0653 -5.7838 2.5315 40 1 3.5368 -5.7311 0.8141 41 1 0.7668 -6.3516 1.9354 42 1 1.8608 -7.4854 1.1076 43 1 -0.6634 -4.7634 -1.8262 44 1 -0.8912 -5.6511 -5.8750 45 1 1.3684 -10.1255 -5.2083 46 1 1.4381 -9.4155 -2.7032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049569570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:38 Heat of formation + Delta-G solvation = 107.052475 kcal Electronic energy + Delta-G solvation = -30688.334638 eV Core-core repulsion = 26773.783100 eV Total energy + Delta-G solvation = -3914.551539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98163 -40.54539 -38.05154 -37.95452 -35.06175 -33.63158 -32.33520 -32.11187 -30.08527 -29.75233 -29.10824 -28.27179 -25.30544 -24.61061 -23.70166 -22.70894 -21.96009 -21.36515 -20.51063 -20.06688 -18.81790 -17.82709 -17.66167 -17.00463 -16.50330 -15.63242 -15.47138 -15.18499 -14.97286 -14.71785 -14.62588 -14.26318 -13.82398 -13.69894 -13.35028 -13.29477 -12.96934 -12.77003 -12.53967 -12.38502 -12.12686 -12.04547 -11.88413 -11.10160 -11.06170 -10.90906 -10.76796 -10.68221 -10.42203 -10.29747 -10.11977 -10.08699 -9.88255 -9.77852 -9.64022 -9.24118 -8.70741 -8.61086 -8.31485 -7.98366 -6.88174 -5.72823 -3.07349 0.53034 1.39590 2.53183 2.78643 2.95210 3.19901 3.39830 3.45670 3.47827 3.92022 4.33783 4.47585 4.61311 4.61437 4.80266 4.93260 5.05664 5.11352 5.21176 5.22941 5.29785 5.34478 5.45865 5.51925 5.59159 5.64449 5.72325 5.74536 5.87495 6.03583 6.08199 6.15139 6.18996 6.20972 6.31639 6.33716 6.44090 6.50010 6.52735 6.75543 6.77614 6.92389 7.01549 7.18593 7.53671 7.55988 7.58274 7.80796 8.00968 8.22436 8.33387 9.19273 9.78866 10.42801 11.38256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003820 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.689463 B = 7328.846453 C = 8564.401208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.005 4.005 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.079 0.921 9 N -0.594 5.594 10 C 0.179 3.821 11 C -0.171 4.171 12 C 0.106 3.894 13 H 0.103 0.897 14 C 0.163 3.837 15 H 0.056 0.944 16 C -0.131 4.131 17 C -0.132 4.132 18 C 0.118 3.882 19 N -0.579 5.579 20 C 0.562 3.438 21 O -0.541 6.541 22 C -0.147 4.147 23 C 0.066 3.934 24 N -0.465 5.465 25 C 0.134 3.866 26 C 0.016 3.984 27 N -0.578 5.578 28 H 0.421 0.579 29 C 0.065 3.935 30 C -0.196 4.196 31 C -0.024 4.024 32 H 0.252 0.748 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.202 0.798 44 H 0.155 0.845 45 H 0.177 0.823 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 -17.316 -8.253 19.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.201 4.201 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.097 0.903 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.210 4.210 12 C 0.001 3.999 13 H 0.121 0.879 14 C 0.055 3.945 15 H 0.074 0.926 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.004 4.004 19 N -0.309 5.309 20 C 0.350 3.650 21 O -0.419 6.419 22 C -0.153 4.153 23 C -0.084 4.084 24 N -0.173 5.173 25 C -0.033 4.033 26 C -0.094 4.094 27 N -0.181 5.181 28 H 0.258 0.742 29 C -0.065 4.065 30 C -0.221 4.221 31 C -0.035 4.035 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.218 0.782 44 H 0.172 0.828 45 H 0.194 0.806 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 0.663 -16.815 -8.219 18.728 hybrid contribution 0.771 0.123 -0.295 0.835 sum 1.434 -16.692 -8.514 18.793 Atomic orbital electron populations 1.69953 1.04827 1.25013 1.56808 1.24780 0.95696 0.97588 1.02046 0.86063 0.78717 0.83835 0.77226 1.20547 1.21738 1.21801 1.19045 0.90455 0.82038 1.44012 0.90332 1.44488 1.01342 0.99219 1.86840 1.21084 0.84521 0.87175 1.01814 1.23480 0.96049 1.00553 1.00889 1.21978 0.97359 0.80138 1.00439 0.87922 1.20807 0.93813 0.85911 0.93990 0.92570 1.22128 1.01612 0.93604 0.99791 1.21859 0.97149 0.96611 1.01431 1.21320 0.95775 0.99269 0.83998 1.46944 1.60887 1.06150 1.16959 1.18069 0.77405 0.85031 0.84507 1.90725 1.54221 1.19598 1.77387 1.20370 1.05224 0.96175 0.93495 1.24679 0.93832 0.94420 0.95481 1.67793 1.18350 1.31750 0.99432 1.22033 0.95095 0.87272 0.98925 1.19335 1.05864 0.93385 0.90810 1.41728 1.51771 1.14964 1.09663 0.74170 1.22108 0.98967 0.93916 0.91516 1.20733 1.08495 0.96492 0.96404 1.18117 0.99162 0.95030 0.91233 0.93718 0.93791 0.92440 0.91192 0.90610 0.91859 0.91774 0.91059 0.91814 0.91967 0.89659 0.78231 0.82756 0.80620 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.11 10.29 55.49 0.57 -25.54 16 2 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 3 Si 0.91 21.66 29.55 -169.99 -5.02 16.63 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 7 C -0.23 -6.05 10.27 -15.06 -0.15 -6.21 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.59 -14.25 2.94 -163.90 -0.48 -14.73 16 10 C 0.18 4.13 5.39 -3.28 -0.02 4.11 16 11 C -0.17 -3.12 5.81 -25.35 -0.15 -3.26 16 12 C 0.11 1.87 2.25 -68.35 -0.15 1.72 16 13 H 0.10 1.89 4.33 -51.93 -0.22 1.66 16 14 C 0.16 3.21 3.27 -67.35 -0.22 2.99 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.13 -2.29 5.31 -26.80 -0.14 -2.43 16 17 C -0.13 -1.85 6.10 -26.74 -0.16 -2.01 16 18 C 0.12 1.73 6.19 -4.45 -0.03 1.71 16 19 N -0.58 -9.48 2.79 -168.73 -0.47 -9.95 16 20 C 0.56 9.68 7.31 -12.54 -0.09 9.59 16 21 O -0.54 -10.15 15.53 5.27 0.08 -10.07 16 22 C -0.15 -2.42 5.41 -104.63 -0.57 -2.99 16 23 C 0.07 1.09 8.54 -17.14 -0.15 0.94 16 24 N -0.47 -7.42 10.30 -12.85 -0.13 -7.55 16 25 C 0.13 1.70 11.21 -17.35 -0.19 1.50 16 26 C 0.02 0.19 7.31 -84.00 -0.61 -0.42 16 27 N -0.58 -4.81 6.13 -10.63 -0.07 -4.87 16 28 H 0.42 1.88 8.96 -40.82 -0.37 1.52 16 29 C 0.07 0.55 11.84 -16.72 -0.20 0.35 16 30 C -0.20 -2.44 10.31 -39.76 -0.41 -2.85 16 31 C -0.02 -0.35 6.00 -106.59 -0.64 -0.99 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.04 1.12 7.60 -51.93 -0.39 0.73 16 34 H 0.06 1.48 7.24 -51.93 -0.38 1.10 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.28 5.76 -51.93 -0.30 0.99 16 37 H 0.06 1.17 8.02 -51.93 -0.42 0.76 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.09 1.23 7.08 -51.93 -0.37 0.86 16 43 H 0.20 3.42 1.91 -52.48 -0.10 3.32 16 44 H 0.16 1.39 8.06 -52.48 -0.42 0.97 16 45 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.15 1.92 7.79 -52.49 -0.41 1.51 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -32.79 356.67 -10.01 -42.80 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.88 Total: 6.39 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -3.98 Total: 1.52 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -0.58 Total: -62.65 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.79 -10.01 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049569570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.848 kcal (2) G-P(sol) polarization free energy of solvation -32.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds