Wall clock time and date at job start Tue Mar 31 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86799 * 119.99787 * 2 1 4 4 H 1.48500 * 109.47219 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47261 * 299.99901 * 3 2 1 6 6 H 1.48504 * 109.47495 * 59.99832 * 3 2 1 7 7 C 1.38812 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99337 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99736 * 0.02562 * 7 2 1 10 10 C 1.46879 * 125.58448 * 359.97438 * 9 7 2 11 11 C 1.54064 * 107.70629 * 177.04736 * 10 9 7 12 12 C 1.54570 * 103.66888 * 342.84333 * 11 10 9 13 13 H 1.08998 * 108.78637 * 273.79531 * 12 11 10 14 14 C 1.47655 * 125.57616 * 179.97438 * 9 7 2 15 15 H 1.08992 * 110.57369 * 322.56963 * 14 9 7 16 16 C 1.52929 * 107.99252 * 83.59474 * 14 9 7 17 17 C 1.52934 * 109.79591 * 171.83960 * 16 14 9 18 18 C 1.53050 * 108.49219 * 294.00755 * 17 16 14 19 19 N 1.44188 * 111.47668 * 153.29038 * 12 11 10 20 20 C 1.34779 * 117.76598 * 93.66094 * 19 12 11 21 21 O 1.21606 * 120.00026 * 187.89580 * 20 19 12 22 22 C 1.47379 * 119.99531 * 8.17026 * 20 19 12 23 23 C 1.39250 * 120.83462 * 324.97980 * 22 20 19 24 24 N 1.31919 * 120.96738 * 179.82893 * 23 22 20 25 25 C 1.31912 * 122.71548 * 0.43008 * 24 23 22 26 26 C 1.38686 * 120.79907 * 359.80485 * 25 24 23 27 27 N 1.37753 * 134.30757 * 179.97438 * 26 25 24 28 28 H 0.97008 * 125.55948 * 0.02881 * 27 26 25 29 29 C 1.36562 * 108.88216 * 180.02562 * 27 26 25 30 30 C 1.34647 * 109.65976 * 359.97438 * 29 27 26 31 31 C 1.40986 * 118.84247 * 359.97438 * 26 25 24 32 32 H 0.97006 * 120.00319 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.80883 * 296.58972 * 10 9 7 34 34 H 1.08997 * 109.81580 * 57.43271 * 10 9 7 35 35 H 1.09000 * 110.57249 * 101.42964 * 11 10 9 36 36 H 1.08998 * 110.57069 * 224.15092 * 11 10 9 37 37 H 1.09002 * 109.41276 * 51.73553 * 16 14 9 38 38 H 1.09004 * 109.41594 * 291.94134 * 16 14 9 39 39 H 1.09000 * 109.63255 * 174.31012 * 17 16 14 40 40 H 1.08996 * 109.80125 * 53.80535 * 17 16 14 41 41 H 1.09000 * 109.46248 * 293.77026 * 18 17 16 42 42 H 1.09001 * 109.44086 * 173.81735 * 18 17 16 43 43 H 1.08003 * 119.51865 * 0.02644 * 23 22 20 44 44 H 1.08003 * 119.60003 * 179.78045 * 25 24 23 45 45 H 1.07999 * 125.16696 * 180.02562 * 29 27 26 46 46 H 1.07993 * 126.08536 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3966 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1363 -2.5309 0.0005 11 6 -0.4601 -4.0352 -0.0751 12 6 0.8639 -4.6700 -0.5579 13 1 0.8918 -4.6382 -1.6471 14 6 1.9360 -3.7324 0.0005 15 1 2.8321 -3.7462 -0.6197 16 6 2.2790 -4.0955 1.4460 17 6 2.7258 -5.5562 1.5211 18 6 1.5332 -6.4474 1.1663 19 7 0.9840 -6.0384 -0.1196 20 6 0.5651 -7.0057 -0.9594 21 8 0.5126 -8.1598 -0.5797 22 6 0.1763 -6.6656 -2.3397 23 6 -0.4561 -5.4586 -2.6263 24 7 -0.8022 -5.1500 -3.8613 25 6 -0.5836 -5.9531 -4.8847 26 6 0.0360 -7.1807 -4.7044 27 7 0.3932 -8.2111 -5.5460 28 1 0.2469 -8.2330 -6.5047 29 6 0.9870 -9.1967 -4.8106 30 6 1.0255 -8.8341 -3.5144 31 6 0.4310 -7.5588 -3.4049 32 1 -0.4851 0.8401 -0.0004 33 1 -0.5486 -2.1100 0.9176 34 1 -0.5577 -2.0174 -0.8637 35 1 -0.7333 -4.4181 0.9082 36 1 -1.2600 -4.2192 -0.7923 37 1 1.3995 -3.9527 2.0739 38 1 3.0842 -3.4516 1.8000 39 1 3.0653 -5.7838 2.5315 40 1 3.5368 -5.7311 0.8141 41 1 0.7668 -6.3516 1.9354 42 1 1.8608 -7.4854 1.1076 43 1 -0.6634 -4.7634 -1.8262 44 1 -0.8912 -5.6511 -5.8750 45 1 1.3684 -10.1255 -5.2083 46 1 1.4381 -9.4155 -2.7032 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049569570.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:37 Heat of formation + Delta-G solvation = 85.876650 kcal Electronic energy + Delta-G solvation = -30689.252891 eV Core-core repulsion = 26773.783100 eV Total energy + Delta-G solvation = -3915.469791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.99440 -41.82048 -39.52242 -39.03151 -36.64624 -34.95495 -33.98270 -33.38707 -31.22251 -30.82939 -30.69663 -29.79739 -26.74685 -26.32657 -24.89942 -23.86733 -23.23901 -22.61524 -21.83762 -21.51331 -19.97111 -19.11237 -18.97435 -18.60371 -17.71512 -16.93659 -16.76850 -16.70593 -16.30778 -15.96694 -15.73250 -15.49996 -15.44844 -15.02289 -14.86198 -14.38006 -14.24328 -14.10258 -13.89109 -13.68941 -13.59038 -13.35071 -13.18399 -12.82745 -12.78194 -12.42341 -12.38877 -12.27963 -11.99729 -11.86427 -11.66008 -11.53481 -11.42494 -11.29997 -11.06873 -10.65448 -10.44979 -9.73737 -9.59064 -8.96942 -8.86188 -7.80632 -5.16536 -0.50892 0.36456 1.49034 1.49508 1.52678 1.59446 1.78947 1.90202 2.08104 2.51887 2.80864 3.20662 3.36412 3.49796 3.60266 3.68776 3.74657 3.78326 3.89990 3.98125 4.05293 4.07766 4.13224 4.17581 4.33827 4.44510 4.49234 4.56221 4.61176 4.64323 4.71770 4.81971 4.86060 4.96300 5.02122 5.11755 5.16003 5.31213 5.39059 5.45323 5.52533 5.55641 5.58552 5.64009 5.78209 5.82337 6.18099 6.26258 6.58632 6.92503 7.02795 7.13189 7.78890 8.42460 9.29272 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.013957 B = 0.003820 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.689463 B = 7328.846453 C = 8564.401208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.061 4.061 3 Si 0.974 3.026 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.083 0.917 9 N -0.612 5.612 10 C 0.193 3.807 11 C -0.155 4.155 12 C 0.126 3.874 13 H 0.098 0.902 14 C 0.158 3.842 15 H 0.052 0.948 16 C -0.122 4.122 17 C -0.118 4.118 18 C 0.115 3.885 19 N -0.578 5.578 20 C 0.563 3.437 21 O -0.560 6.560 22 C -0.175 4.175 23 C 0.057 3.943 24 N -0.502 5.502 25 C 0.144 3.856 26 C 0.008 3.992 27 N -0.553 5.553 28 H 0.443 0.557 29 C 0.113 3.887 30 C -0.243 4.243 31 C -0.048 4.048 32 H 0.246 0.754 33 H 0.011 0.989 34 H 0.023 0.977 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.186 0.814 44 H 0.193 0.807 45 H 0.230 0.770 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.479 -19.898 -10.207 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.254 4.254 3 Si 0.803 3.197 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.363 4.363 8 H 0.101 0.899 9 N -0.336 5.336 10 C 0.067 3.933 11 C -0.193 4.193 12 C 0.020 3.980 13 H 0.115 0.885 14 C 0.050 3.950 15 H 0.070 0.930 16 C -0.162 4.162 17 C -0.156 4.156 18 C -0.007 4.007 19 N -0.308 5.308 20 C 0.353 3.647 21 O -0.440 6.440 22 C -0.180 4.180 23 C -0.093 4.093 24 N -0.211 5.211 25 C -0.022 4.022 26 C -0.103 4.103 27 N -0.157 5.157 28 H 0.286 0.714 29 C -0.019 4.019 30 C -0.267 4.267 31 C -0.060 4.060 32 H 0.056 0.944 33 H 0.029 0.971 34 H 0.041 0.959 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.111 0.889 43 H 0.202 0.798 44 H 0.210 0.790 45 H 0.247 0.753 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.013 -19.428 -10.193 22.032 hybrid contribution 0.389 0.774 0.154 0.880 sum 2.401 -18.654 -10.040 21.320 Atomic orbital electron populations 1.70166 1.06155 1.25111 1.58261 1.25556 0.96510 1.00674 1.02674 0.85073 0.78243 0.79852 0.76536 1.19064 1.22145 1.22132 1.19389 0.90916 0.83216 1.42732 0.89928 1.44696 1.01855 1.00336 1.86751 1.20728 0.84155 0.89856 0.98519 1.23297 0.97066 0.97063 1.01910 1.21607 0.95833 0.80534 1.00000 0.88469 1.20999 0.93953 0.84443 0.95564 0.92996 1.21940 1.00785 0.96045 0.97411 1.21783 0.96874 0.93524 1.03426 1.21484 0.96154 0.99738 0.83288 1.46929 1.60961 1.05268 1.17595 1.18241 0.76854 0.84705 0.84913 1.90696 1.55284 1.20187 1.77832 1.20336 1.07116 0.97015 0.93576 1.24359 0.94749 0.94391 0.95771 1.67765 1.20221 1.33271 0.99822 1.22595 0.93261 0.86858 0.99492 1.19316 1.06070 0.94153 0.90725 1.41791 1.49880 1.13457 1.10609 0.71410 1.22827 0.94841 0.94362 0.89911 1.20835 1.11202 0.96328 0.98326 1.18502 0.99658 0.95939 0.91882 0.94444 0.97086 0.95919 0.90313 0.89270 0.93145 0.92610 0.88050 0.91275 0.91355 0.88889 0.79810 0.79000 0.75334 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.29 21.65 0.22 -56.16 16 2 C -0.06 -3.42 5.49 84.86 0.47 -2.95 16 3 Si 0.97 45.52 29.55 68.60 2.03 47.55 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 7 C -0.23 -12.78 10.27 84.03 0.86 -11.92 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 9 N -0.61 -30.51 2.94 -672.46 -1.97 -32.48 16 10 C 0.19 9.44 5.39 86.67 0.47 9.91 16 11 C -0.15 -5.89 5.81 31.49 0.18 -5.71 16 12 C 0.13 4.56 2.25 45.95 0.10 4.66 16 13 H 0.10 3.73 4.33 -2.39 -0.01 3.72 16 14 C 0.16 6.33 3.27 44.74 0.15 6.48 16 15 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.12 -4.24 5.31 30.55 0.16 -4.07 16 17 C -0.12 -3.10 6.10 30.59 0.19 -2.92 16 18 C 0.11 3.23 6.19 86.55 0.54 3.77 16 19 N -0.58 -18.94 2.79 -806.00 -2.25 -21.19 16 20 C 0.56 19.60 7.31 86.65 0.63 20.24 16 21 O -0.56 -21.06 15.53 -4.05 -0.06 -21.13 16 22 C -0.17 -5.84 5.41 -19.87 -0.11 -5.95 16 23 C 0.06 1.94 8.54 84.92 0.73 2.66 16 24 N -0.50 -16.12 10.30 -194.56 -2.00 -18.13 16 25 C 0.14 3.42 11.21 84.79 0.95 4.37 16 26 C 0.01 0.18 7.31 38.99 0.29 0.46 16 27 N -0.55 -6.76 6.13 -187.56 -1.15 -7.91 16 28 H 0.44 1.58 8.96 -92.70 -0.83 0.74 16 29 C 0.11 1.40 11.84 83.13 0.98 2.38 16 30 C -0.24 -5.57 10.31 22.16 0.23 -5.35 16 31 C -0.05 -1.38 6.00 -21.14 -0.13 -1.51 16 32 H 0.25 14.31 8.31 -92.70 -0.77 13.53 16 33 H 0.01 0.60 7.60 -2.39 -0.02 0.58 16 34 H 0.02 1.25 7.24 -2.39 -0.02 1.23 16 35 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 36 H 0.09 3.19 5.76 -2.39 -0.01 3.18 16 37 H 0.05 1.88 8.02 -2.39 -0.02 1.86 16 38 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 2.54 7.08 -2.39 -0.02 2.52 16 43 H 0.19 6.63 1.91 -2.91 -0.01 6.63 16 44 H 0.19 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.23 0.37 8.06 -2.91 -0.02 0.35 16 46 H 0.14 3.49 7.79 -2.91 -0.02 3.47 16 Total: -1.00 -76.19 356.67 1.71 -74.48 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: 0.21 Total: 20.40 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 6.69 Total: 14.55 kcal Atomic # 7 Polarization: -128.71 SS G_CDS: -7.15 Total: -135.86 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.06 Total: -21.13 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -76.19 1.71 -74.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049569570.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.361 kcal (2) G-P(sol) polarization free energy of solvation -76.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds