Wall clock time and date at job start Tue Mar 31 2020 23:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48503 * 109.47150 * 269.99756 * 3 2 1 5 5 H 1.48496 * 109.47070 * 29.99866 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00036 * 3 2 1 7 7 C 1.38809 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99770 * 180.02562 * 7 2 1 9 9 N 1.36940 * 120.00301 * 359.97438 * 7 2 1 10 10 C 1.47123 * 125.76173 * 0.02562 * 9 7 2 11 11 C 1.54568 * 107.24817 * 182.59595 * 10 9 7 12 12 C 1.53908 * 102.55406 * 21.71560 * 11 10 9 13 13 H 1.08990 * 110.55167 * 80.59853 * 12 11 10 14 14 C 1.48209 * 125.76821 * 180.02562 * 9 7 2 15 15 H 1.08998 * 111.52868 * 32.97936 * 14 9 7 16 16 C 1.53006 * 107.11407 * 270.86482 * 14 9 7 17 17 C 1.52736 * 110.80781 * 191.93918 * 16 14 9 18 18 C 1.53469 * 108.44064 * 63.76310 * 17 16 14 19 19 N 1.45121 * 111.89550 * 203.54329 * 12 11 10 20 20 C 1.34785 * 119.57315 * 248.65728 * 19 12 11 21 21 O 1.21604 * 119.99931 * 3.84470 * 20 19 12 22 22 C 1.47373 * 119.99697 * 183.83824 * 20 19 12 23 23 C 1.39250 * 120.84276 * 305.56409 * 22 20 19 24 24 N 1.31912 * 120.97448 * 179.97438 * 23 22 20 25 25 C 1.31919 * 122.71513 * 0.02562 * 24 23 22 26 26 C 1.38688 * 120.79922 * 359.97438 * 25 24 23 27 27 N 1.37747 * 134.30792 * 180.02562 * 26 25 24 28 28 H 0.96998 * 125.56370 * 359.97438 * 27 26 25 29 29 C 1.36557 * 108.88100 * 179.97438 * 27 26 25 30 30 C 1.34646 * 109.66536 * 0.05755 * 29 27 26 31 31 C 1.40990 * 118.83667 * 0.02562 * 26 25 24 32 32 H 0.96998 * 120.00416 * 0.02562 * 1 2 3 33 33 H 1.08998 * 109.88788 * 302.00605 * 10 9 7 34 34 H 1.08998 * 109.88582 * 63.03125 * 10 9 7 35 35 H 1.09003 * 110.80743 * 139.90601 * 11 10 9 36 36 H 1.08993 * 110.81390 * 263.23102 * 11 10 9 37 37 H 1.08993 * 109.21339 * 71.59653 * 16 14 9 38 38 H 1.08999 * 109.17451 * 312.25469 * 16 14 9 39 39 H 1.09010 * 109.64044 * 304.08324 * 17 16 14 40 40 H 1.08993 * 109.82163 * 183.55749 * 17 16 14 41 41 H 1.08995 * 109.83375 * 182.39676 * 18 17 16 42 42 H 1.09001 * 109.83018 * 61.44321 * 18 17 16 43 43 H 1.08002 * 119.51190 * 0.02562 * 23 22 20 44 44 H 1.07998 * 119.59875 * 179.71915 * 25 24 23 45 45 H 1.08007 * 125.17225 * 180.02562 * 29 27 26 46 46 H 1.07997 * 126.09673 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4475 2.6526 0.7000 6 1 3.5477 1.4403 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1382 -2.5359 -0.0005 11 6 -0.4461 -4.0491 0.0663 12 6 0.8524 -4.6290 0.6548 13 1 0.8713 -4.5037 1.7373 14 6 1.9340 -3.7396 -0.0005 15 1 2.8737 -3.7552 0.5514 16 6 2.1389 -4.1411 -1.4627 17 6 2.4846 -5.6246 -1.5746 18 6 1.2878 -6.4414 -1.0689 19 7 1.0225 -6.0295 0.3148 20 6 0.9302 -6.9646 1.2812 21 8 0.6368 -6.6396 2.4157 22 6 1.1847 -8.3808 0.9628 23 6 0.4903 -9.0181 -0.0623 24 7 0.7164 -10.2855 -0.3498 25 6 1.5980 -11.0183 0.3028 26 6 2.3417 -10.4774 1.3410 27 7 3.3098 -10.9687 2.1889 28 1 3.6561 -11.8748 2.1850 29 6 3.7025 -9.9721 3.0358 30 6 3.0149 -8.8474 2.7618 31 6 2.1398 -9.1264 1.6902 32 1 -0.4850 0.8400 -0.0004 33 1 -0.5617 -2.0326 0.8686 34 1 -0.5538 -2.1106 -0.9141 35 1 -1.2900 -4.2437 0.7282 36 1 -0.6363 -4.4500 -0.9292 37 1 2.9512 -3.5506 -1.8863 38 1 1.2233 -3.9432 -2.0200 39 1 3.3614 -5.8435 -0.9650 40 1 2.6887 -5.8791 -2.6146 41 1 1.5264 -7.5045 -1.0991 42 1 0.4142 -6.2399 -1.6888 43 1 -0.2436 -8.4663 -0.6309 44 1 1.7395 -12.0531 0.0280 45 1 4.4507 -10.0711 3.8085 46 1 3.1160 -7.9000 3.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049569572.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:40 Heat of formation + Delta-G solvation = 56.033542 kcal Electronic energy + Delta-G solvation = -30145.161380 eV Core-core repulsion = 26228.397494 eV Total energy + Delta-G solvation = -3916.763886 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.85607 -41.61295 -39.59257 -38.84879 -36.80040 -34.35085 -33.78526 -33.49457 -31.29904 -30.96086 -30.50174 -29.65025 -26.79688 -26.06296 -24.99066 -23.77921 -23.25018 -22.47237 -21.93407 -21.42992 -19.83678 -19.12009 -18.76572 -18.65509 -17.66847 -17.15132 -16.78462 -16.49914 -16.19708 -15.83520 -15.76268 -15.55007 -15.30917 -15.04322 -14.94098 -14.40621 -14.24357 -14.11749 -13.86308 -13.64899 -13.50870 -13.40765 -13.12509 -12.97512 -12.79512 -12.64019 -12.37035 -12.30923 -12.07204 -11.96254 -11.73456 -11.55306 -11.39886 -11.20462 -11.12203 -10.70977 -10.48603 -9.68188 -9.63033 -8.95536 -8.89800 -7.83700 -5.19832 -0.41817 0.38096 1.45055 1.47362 1.48560 1.56153 1.72077 1.90574 2.08705 2.49954 2.79682 3.25743 3.34422 3.53465 3.57536 3.72295 3.86151 3.86907 3.92644 4.00424 4.07167 4.11053 4.15497 4.17768 4.34285 4.45289 4.55297 4.55735 4.64348 4.69679 4.74462 4.80234 4.83690 4.96086 5.04119 5.12490 5.17283 5.32734 5.39619 5.40388 5.48723 5.54095 5.59424 5.63737 5.73803 5.81621 6.18028 6.33607 6.58595 6.91634 7.05260 7.09275 7.74866 8.40731 9.26384 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021728 B = 0.002896 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.344675 B = 9665.368504 C = 9989.477295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.066 4.066 3 Si 0.978 3.022 4 H -0.284 1.284 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.618 5.618 10 C 0.193 3.807 11 C -0.133 4.133 12 C 0.147 3.853 13 H 0.069 0.931 14 C 0.153 3.847 15 H 0.049 0.951 16 C -0.118 4.118 17 C -0.120 4.120 18 C 0.098 3.902 19 N -0.581 5.581 20 C 0.563 3.437 21 O -0.579 6.579 22 C -0.156 4.156 23 C 0.098 3.902 24 N -0.487 5.487 25 C 0.147 3.853 26 C 0.018 3.982 27 N -0.553 5.553 28 H 0.445 0.555 29 C 0.113 3.887 30 C -0.254 4.254 31 C -0.056 4.056 32 H 0.246 0.754 33 H 0.010 0.990 34 H 0.014 0.986 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.170 0.830 44 H 0.198 0.802 45 H 0.224 0.776 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.361 -28.623 -0.759 29.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.258 4.258 3 Si 0.807 3.193 4 H -0.211 1.211 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.343 5.343 10 C 0.068 3.932 11 C -0.173 4.173 12 C 0.042 3.958 13 H 0.087 0.913 14 C 0.046 3.954 15 H 0.067 0.933 16 C -0.158 4.158 17 C -0.159 4.159 18 C -0.023 4.023 19 N -0.311 5.311 20 C 0.352 3.648 21 O -0.460 6.460 22 C -0.162 4.162 23 C -0.053 4.053 24 N -0.195 5.195 25 C -0.020 4.020 26 C -0.093 4.093 27 N -0.157 5.157 28 H 0.287 0.713 29 C -0.019 4.019 30 C -0.278 4.278 31 C -0.067 4.067 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.033 0.967 35 H 0.085 0.915 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.107 0.893 43 H 0.187 0.813 44 H 0.215 0.785 45 H 0.241 0.759 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.714 -28.661 -0.868 29.694 hybrid contribution 0.553 2.030 1.047 2.351 sum 8.268 -26.631 0.179 27.885 Atomic orbital electron populations 1.70176 1.06276 1.25235 1.58339 1.25631 0.96586 1.00911 1.02719 0.85082 0.77568 0.79191 0.77504 1.21075 1.22282 1.19523 1.19396 0.90888 0.83440 1.42792 0.90074 1.44964 1.02006 1.00534 1.86783 1.20848 0.83991 0.90431 0.97974 1.22834 0.96769 0.96261 1.01399 1.21262 0.95789 0.79738 0.99022 0.91327 1.21608 0.94032 0.84379 0.95400 0.93336 1.21896 1.01202 0.96061 0.96601 1.21858 0.97500 0.93699 1.02849 1.22328 0.99178 1.00587 0.80191 1.47551 1.69113 1.05030 1.09367 1.18554 0.76092 0.86043 0.84141 1.90760 1.49727 1.82652 1.22815 1.20141 1.02021 0.93354 1.00655 1.22724 0.97979 0.91091 0.93491 1.67703 1.17293 1.06440 1.28097 1.22546 0.89495 1.01004 0.88908 1.19343 0.97730 0.93582 0.98633 1.41771 1.32397 1.13935 1.27583 0.71262 1.22686 0.98674 0.85715 0.94841 1.20783 1.03415 1.01023 1.02602 1.18455 0.97155 0.93801 0.97315 0.94429 0.97150 0.96748 0.91502 0.89662 0.93103 0.92672 0.91981 0.87911 0.87490 0.89344 0.81289 0.78521 0.75932 0.85456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.49 10.33 21.65 0.22 -58.26 16 2 C -0.07 -3.81 5.49 84.86 0.47 -3.34 16 3 Si 0.98 46.76 29.55 68.60 2.03 48.78 16 4 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.24 -13.47 10.29 84.03 0.86 -12.61 16 8 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 9 N -0.62 -32.45 2.91 -666.33 -1.94 -34.39 16 10 C 0.19 9.95 5.19 86.79 0.45 10.40 16 11 C -0.13 -5.38 6.05 31.43 0.19 -5.19 16 12 C 0.15 5.88 3.07 46.10 0.14 6.02 16 13 H 0.07 3.19 6.99 -2.39 -0.02 3.18 16 14 C 0.15 6.48 3.61 45.21 0.16 6.64 16 15 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 16 C -0.12 -4.10 5.10 30.51 0.16 -3.94 16 17 C -0.12 -3.01 6.11 30.66 0.19 -2.83 16 18 C 0.10 2.37 5.20 86.48 0.45 2.82 16 19 N -0.58 -18.74 2.74 -798.53 -2.19 -20.93 16 20 C 0.56 19.43 7.12 86.65 0.62 20.05 16 21 O -0.58 -25.02 16.44 -4.04 -0.07 -25.08 16 22 C -0.16 -4.30 4.84 -19.87 -0.10 -4.40 16 23 C 0.10 2.23 8.59 84.92 0.73 2.96 16 24 N -0.49 -9.75 10.30 -194.57 -2.00 -11.76 16 25 C 0.15 2.15 11.21 84.79 0.95 3.10 16 26 C 0.02 0.29 7.31 39.00 0.29 0.58 16 27 N -0.55 -4.80 6.13 -187.55 -1.15 -5.95 16 28 H 0.44 -0.06 8.96 -92.71 -0.83 -0.89 16 29 C 0.11 1.27 11.83 83.13 0.98 2.26 16 30 C -0.25 -5.69 10.73 22.16 0.24 -5.45 16 31 C -0.06 -1.38 6.07 -21.13 -0.13 -1.51 16 32 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 33 H 0.01 0.60 7.30 -2.39 -0.02 0.59 16 34 H 0.01 0.81 7.59 -2.39 -0.02 0.79 16 35 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.08 3.00 6.83 -2.39 -0.02 2.99 16 37 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.05 2.03 7.12 -2.39 -0.02 2.01 16 39 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.11 2.20 4.72 -2.39 -0.01 2.19 16 42 H 0.09 1.90 7.53 -2.39 -0.02 1.89 16 43 H 0.17 3.38 7.36 -2.91 -0.02 3.35 16 44 H 0.20 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.22 0.41 8.06 -2.91 -0.02 0.38 16 46 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -82.03 362.99 1.75 -80.28 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.19 Total: 11.73 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.65 Total: 15.58 kcal Atomic # 7 Polarization: -124.23 SS G_CDS: -7.06 Total: -131.29 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.07 Total: -25.08 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.78 kcal Total: -82.03 1.75 -80.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049569572.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.317 kcal (2) G-P(sol) polarization free energy of solvation -82.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds