Wall clock time and date at job start Tue Mar 31 2020 23:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99763 * 2 1 4 4 H 1.48492 * 109.47202 * 274.99895 * 3 2 1 5 5 H 1.48507 * 109.47294 * 35.00042 * 3 2 1 6 6 H 1.48500 * 109.47319 * 154.99486 * 3 2 1 7 7 C 1.38813 * 120.00245 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00290 * 185.07305 * 7 2 1 9 9 N 1.36942 * 119.99864 * 5.06940 * 7 2 1 10 10 C 1.46920 * 125.37431 * 174.68041 * 9 7 2 11 11 C 1.54352 * 106.17831 * 162.07265 * 10 9 7 12 12 H 1.08997 * 108.99932 * 271.42182 * 11 10 9 13 13 C 1.50711 * 110.39590 * 151.31224 * 11 10 9 14 14 C 1.51323 * 113.54700 * 289.55816 * 13 11 10 15 15 C 1.51632 * 111.98437 * 304.62168 * 14 13 11 16 16 N 1.44509 * 112.65449 * 42.75443 * 15 14 13 17 17 C 1.34769 * 116.63364 * 154.62691 * 16 15 14 18 18 O 1.21568 * 120.00511 * 179.07427 * 17 16 15 19 19 C 1.47773 * 119.99942 * 359.08313 * 17 16 15 20 20 N 1.32745 * 120.05478 * 6.77660 * 19 17 16 21 21 C 1.31730 * 122.13020 * 179.67584 * 20 19 17 22 22 C 1.38305 * 121.68280 * 0.62613 * 21 20 19 23 23 C 1.39026 * 119.09717 * 359.69234 * 22 21 20 24 24 N 1.37189 * 134.64576 * 180.02562 * 23 22 21 25 25 H 0.97000 * 125.06524 * 359.95798 * 24 23 22 26 26 C 1.36722 * 109.86906 * 179.97438 * 24 23 22 27 27 C 1.34559 * 109.96451 * 0.02562 * 26 24 23 28 28 C 1.40406 * 120.05930 * 187.05910 * 19 17 16 29 29 C 1.44104 * 126.73451 * 334.60550 * 16 15 14 30 30 H 1.09004 * 109.10435 * 254.75724 * 29 16 15 31 31 C 1.46816 * 125.37857 * 354.99393 * 9 7 2 32 32 H 0.96993 * 120.00577 * 0.02562 * 1 2 3 33 33 H 1.08995 * 110.10044 * 281.38173 * 10 9 7 34 34 H 1.09001 * 110.09646 * 42.98279 * 10 9 7 35 35 H 1.09004 * 108.66283 * 168.51527 * 13 11 10 36 36 H 1.08997 * 108.67370 * 50.61446 * 13 11 10 37 37 H 1.08995 * 108.98101 * 183.97554 * 14 13 11 38 38 H 1.09000 * 108.91084 * 65.21526 * 14 13 11 39 39 H 1.09008 * 108.84558 * 281.94210 * 15 14 13 40 40 H 1.08994 * 108.76774 * 163.51741 * 15 14 13 41 41 H 1.07989 * 119.15309 * 180.29292 * 21 20 19 42 42 H 1.08008 * 120.44594 * 179.66343 * 22 21 20 43 43 H 1.08007 * 125.01535 * 179.97438 * 26 24 23 44 44 H 1.07994 * 126.50890 * 179.97438 * 27 26 24 45 45 H 1.09001 * 109.83982 * 300.37138 * 31 9 7 46 46 H 1.08999 * 109.84161 * 61.37775 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3920 2.1074 -1.3947 5 1 1.5044 2.6199 0.8031 6 1 3.5965 1.4121 0.5918 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 0.0832 9 7 1.3297 -2.3858 -0.1037 10 6 1.9464 -3.7137 -0.2262 11 6 0.8486 -4.7335 0.1442 12 1 0.8715 -4.9044 1.2205 13 6 1.0804 -6.0385 -0.5733 14 6 0.8239 -5.9634 -2.0627 15 6 -0.5709 -5.4563 -2.3736 16 7 -0.9561 -4.3403 -1.5402 17 6 -1.8845 -3.5029 -2.0431 18 8 -2.2658 -2.5532 -1.3868 19 6 -2.4392 -3.7389 -3.3923 20 7 -2.1266 -4.8456 -4.0553 21 6 -2.6023 -5.1005 -5.2570 22 6 -3.4488 -4.2193 -5.9050 23 6 -3.8110 -3.0378 -5.2681 24 7 -4.6047 -1.9687 -5.5985 25 1 -5.0895 -1.8714 -6.4330 26 6 -4.6102 -1.0606 -4.5764 27 6 -3.8354 -1.4996 -3.5677 28 6 -3.2930 -2.7904 -3.9775 29 6 -0.4505 -4.0307 -0.2268 30 1 -1.2054 -4.2887 0.5161 31 6 -0.1315 -2.5278 -0.1173 32 1 -0.4850 0.8399 -0.0004 33 1 2.2830 -3.8774 -1.2498 34 1 2.7860 -3.8017 0.4633 35 1 0.4228 -6.7943 -0.1437 36 1 2.1134 -6.3466 -0.4122 37 1 0.9440 -6.9572 -2.4937 38 1 1.5540 -5.2912 -2.5134 39 1 -1.2822 -6.2688 -2.2249 40 1 -0.6061 -5.1447 -3.4175 41 1 -2.3199 -6.0183 -5.7508 42 1 -3.8229 -4.4459 -6.8925 43 1 -5.1552 -0.1281 -4.5788 44 1 -3.6504 -0.9928 -2.6322 45 1 -0.5508 -2.1268 0.8054 46 1 -0.5467 -1.9980 -0.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050139721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:49 Heat of formation + Delta-G solvation = 109.201874 kcal Electronic energy + Delta-G solvation = -30900.321869 eV Core-core repulsion = 26985.863535 eV Total energy + Delta-G solvation = -3914.458334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65065 -40.24978 -38.16297 -37.27216 -35.17784 -33.03697 -32.27609 -31.76461 -30.65107 -29.53796 -29.07965 -27.05153 -25.44455 -24.67256 -23.50649 -22.65636 -21.95074 -21.25022 -20.49950 -19.68400 -18.15713 -17.61604 -17.31718 -16.51694 -16.04728 -15.51633 -15.42847 -15.17464 -14.87155 -14.64216 -14.17490 -13.90280 -13.75502 -13.67970 -13.53672 -12.96559 -12.92736 -12.81145 -12.62139 -12.34025 -12.01335 -11.69840 -11.54436 -11.21859 -11.02259 -10.86938 -10.65483 -10.45722 -10.21108 -10.10372 -9.87723 -9.82806 -9.78995 -9.49479 -9.21179 -8.85596 -8.69535 -8.31093 -7.86268 -7.66393 -6.55820 -5.47886 -2.83178 0.59953 1.46656 2.69503 2.92298 3.22644 3.50665 3.54631 3.56075 3.57552 4.16069 4.35525 4.56947 4.65566 4.80424 4.94675 5.06644 5.17437 5.23044 5.32942 5.34862 5.45412 5.47056 5.59511 5.66900 5.76637 5.87999 5.99827 6.02647 6.05644 6.13684 6.19123 6.25901 6.32564 6.42053 6.46529 6.62264 6.64298 6.76114 6.79875 6.87413 6.90808 6.99671 7.33580 7.36549 7.72943 7.85787 7.98467 8.04122 8.26997 8.53216 8.86050 9.42958 10.04134 10.70113 11.60471 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.004912 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2750.170938 B = 5699.049577 C = 7793.279760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.005 4.005 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.233 4.233 8 H 0.074 0.926 9 N -0.607 5.607 10 C 0.142 3.858 11 C -0.102 4.102 12 H 0.078 0.922 13 C -0.102 4.102 14 C -0.131 4.131 15 C 0.100 3.900 16 N -0.567 5.567 17 C 0.546 3.454 18 O -0.491 6.491 19 C 0.149 3.851 20 N -0.467 5.467 21 C 0.088 3.912 22 C -0.168 4.168 23 C 0.119 3.881 24 N -0.591 5.591 25 H 0.416 0.584 26 C 0.037 3.963 27 C -0.154 4.154 28 C -0.110 4.110 29 C 0.129 3.871 30 H 0.057 0.943 31 C 0.168 3.832 32 H 0.251 0.749 33 H 0.015 0.985 34 H 0.030 0.970 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.126 0.874 41 H 0.161 0.839 42 H 0.131 0.869 43 H 0.176 0.824 44 H 0.167 0.833 45 H 0.047 0.953 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -11.895 -12.922 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.202 4.202 3 Si 0.735 3.265 4 H -0.219 1.219 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.361 4.361 8 H 0.092 0.908 9 N -0.334 5.334 10 C 0.015 3.985 11 C -0.121 4.121 12 H 0.096 0.904 13 C -0.140 4.140 14 C -0.169 4.169 15 C -0.022 4.022 16 N -0.299 5.299 17 C 0.331 3.669 18 O -0.365 6.365 19 C 0.005 3.995 20 N -0.181 5.181 21 C -0.064 4.064 22 C -0.192 4.192 23 C 0.004 3.996 24 N -0.195 5.195 25 H 0.253 0.747 26 C -0.088 4.088 27 C -0.180 4.180 28 C -0.118 4.118 29 C 0.025 3.975 30 H 0.075 0.925 31 C 0.043 3.957 32 H 0.061 0.939 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.142 0.858 41 H 0.178 0.822 42 H 0.149 0.851 43 H 0.194 0.806 44 H 0.185 0.815 45 H 0.065 0.935 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.126 -11.746 -12.207 19.242 hybrid contribution -0.230 1.422 -0.902 1.700 sum -9.356 -10.324 -13.109 19.130 Atomic orbital electron populations 1.70033 1.04440 1.24650 1.55959 1.24839 0.95666 0.97360 1.02367 0.86217 0.78672 0.84278 0.77320 1.21877 1.21846 1.20798 1.18976 0.90610 0.82584 1.43976 0.90766 1.44400 1.01951 1.00582 1.86504 1.21413 0.93814 0.85963 0.97264 1.21364 0.95832 0.94882 1.00064 0.90381 1.20501 1.01324 0.96737 0.95466 1.21234 0.97887 1.01121 0.96621 1.21838 0.94433 0.88403 0.97565 1.46610 1.39445 1.26398 1.17466 1.17864 0.81230 0.83101 0.84729 1.90878 1.58629 1.28015 1.58942 1.21010 0.93971 0.89802 0.94751 1.68250 1.21661 1.19215 1.08999 1.22529 0.93867 0.98561 0.91462 1.21082 1.03373 0.93247 1.01482 1.18281 0.95396 0.90710 0.95230 1.41622 1.42894 1.16845 1.18154 0.74657 1.22082 1.03004 0.95593 0.88088 1.22105 1.00247 0.94685 1.00931 1.19822 1.00585 0.97171 0.94246 1.21215 0.94491 0.99858 0.81948 0.92485 1.21799 0.83458 0.87027 1.03374 0.93861 0.96695 0.95190 0.92711 0.91962 0.91243 0.91731 0.93047 0.85780 0.82163 0.85148 0.80646 0.81514 0.93463 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.21 10.29 55.49 0.57 -27.64 16 2 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 3 Si 0.90 23.17 29.56 -169.99 -5.02 18.14 16 4 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 5 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.23 -6.90 10.25 -15.06 -0.15 -7.05 16 8 H 0.07 2.12 7.83 -52.49 -0.41 1.71 16 9 N -0.61 -16.70 3.39 -171.18 -0.58 -17.28 16 10 C 0.14 3.16 6.65 -3.10 -0.02 3.14 16 11 C -0.10 -1.91 3.06 -91.42 -0.28 -2.19 16 12 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 13 C -0.10 -1.50 5.17 -28.72 -0.15 -1.65 16 14 C -0.13 -1.86 5.83 -28.27 -0.16 -2.02 16 15 C 0.10 1.58 4.91 -5.80 -0.03 1.55 16 16 N -0.57 -11.10 3.09 -171.16 -0.53 -11.63 16 17 C 0.55 11.43 6.90 -12.37 -0.09 11.35 16 18 O -0.49 -11.88 12.23 5.31 0.06 -11.82 16 19 C 0.15 2.63 6.57 -82.76 -0.54 2.09 16 20 N -0.47 -6.85 5.71 -9.66 -0.06 -6.91 16 21 C 0.09 0.98 11.14 -17.57 -0.20 0.79 16 22 C -0.17 -1.75 10.14 -39.26 -0.40 -2.15 16 23 C 0.12 1.51 7.34 -84.03 -0.62 0.90 16 24 N -0.59 -5.84 6.05 -10.59 -0.06 -5.90 16 25 H 0.42 2.46 8.96 -40.82 -0.37 2.10 16 26 C 0.04 0.41 11.82 -16.67 -0.20 0.21 16 27 C -0.15 -2.44 10.26 -37.83 -0.39 -2.82 16 28 C -0.11 -1.82 6.15 -104.88 -0.64 -2.46 16 29 C 0.13 2.75 3.17 -69.03 -0.22 2.53 16 30 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 31 C 0.17 4.50 4.12 -3.34 -0.01 4.48 16 32 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 33 H 0.02 0.34 6.68 -51.93 -0.35 0.00 16 34 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.01 6.98 -51.93 -0.36 0.65 16 39 H 0.05 0.75 8.07 -51.92 -0.42 0.33 16 40 H 0.13 1.97 4.71 -76.42 -0.36 1.61 16 41 H 0.16 1.18 8.06 -52.49 -0.42 0.76 16 42 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 43 H 0.18 1.30 8.06 -52.48 -0.42 0.87 16 44 H 0.17 2.98 7.25 -52.49 -0.38 2.60 16 45 H 0.05 1.42 7.52 -51.93 -0.39 1.03 16 46 H 0.09 2.59 4.41 -51.93 -0.23 2.37 16 LS Contribution 354.31 15.07 5.34 5.34 Total: -1.00 -36.52 354.31 -10.67 -47.19 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -6.20 Total: 4.06 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -4.19 Total: 6.44 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.66 Total: -69.35 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.06 Total: -11.82 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.52 -10.67 -47.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050139721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.392 kcal (2) G-P(sol) polarization free energy of solvation -36.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds