Wall clock time and date at job start Tue Mar 31 2020 23:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 120.00216 * 2 1 4 4 H 1.48497 * 109.47201 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47080 * 299.99776 * 3 2 1 6 6 H 1.48506 * 109.47018 * 59.99875 * 3 2 1 7 7 C 1.38810 * 119.99740 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00204 * 179.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09003 * 113.66623 * 220.70706 * 13 12 10 15 15 N 1.46499 * 113.66265 * 89.73701 * 13 12 10 16 16 C 1.34778 * 119.99554 * 104.50571 * 15 13 12 17 17 O 1.21585 * 120.00263 * 0.02562 * 16 15 13 18 18 C 1.47583 * 119.99882 * 179.97438 * 16 15 13 19 19 C 1.40092 * 120.35696 * 0.02562 * 18 16 15 20 20 N 1.31157 * 121.12073 * 180.02562 * 19 18 16 21 21 C 1.33371 * 121.67827 * 359.97438 * 20 19 18 22 22 C 1.41850 * 133.17074 * 180.02562 * 21 20 19 23 23 C 1.34464 * 107.95702 * 179.97438 * 22 21 20 24 24 N 1.36539 * 109.71387 * 359.97438 * 23 22 21 25 25 H 0.97004 * 125.59636 * 179.97438 * 24 23 22 26 26 C 1.37858 * 108.80594 * 0.02562 * 24 23 22 27 27 C 1.38726 * 133.56442 * 180.36107 * 26 24 23 28 28 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 29 29 C 1.52907 * 121.14350 * 94.90830 * 28 10 9 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 10 31 31 C 1.52906 * 121.13637 * 346.33941 * 28 10 9 32 32 H 0.96998 * 119.99409 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 35 35 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 36 36 H 0.96995 * 120.00166 * 284.50795 * 15 13 12 37 37 H 1.07998 * 119.43714 * 359.97391 * 19 18 16 38 38 H 1.07994 * 126.02294 * 359.95041 * 22 21 20 39 39 H 1.08000 * 125.13920 * 180.02562 * 23 22 21 40 40 H 1.08001 * 120.91431 * 359.87689 * 27 26 24 41 41 H 1.09001 * 113.66043 * 323.84687 * 29 28 10 42 42 H 1.09000 * 113.66310 * 94.90448 * 29 28 10 43 43 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 44 44 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 45 45 H 1.08996 * 113.66552 * 265.09839 * 31 28 10 46 46 H 1.09001 * 113.66060 * 36.16135 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 -0.0051 11 1 3.0461 -3.5739 -0.4578 12 6 2.0606 -4.3748 1.3567 13 6 1.8529 -5.6889 0.5821 14 1 1.1451 -6.3690 1.0562 15 7 3.1030 -6.3469 0.1944 16 6 3.5255 -7.4383 0.8630 17 8 2.8689 -7.8770 1.7875 18 6 4.7847 -8.1015 0.4721 19 6 5.5469 -7.6027 -0.5923 20 7 6.6678 -8.1806 -0.9526 21 6 7.1309 -9.2628 -0.3256 22 6 8.2854 -10.0676 -0.5032 23 6 8.2556 -11.0448 0.4199 24 7 7.1366 -10.9154 1.1916 25 1 6.8867 -11.4978 1.9260 26 6 6.4198 -9.8218 0.7550 27 6 5.2336 -9.2305 1.1648 28 6 1.2379 -4.8365 -0.5285 29 6 1.3191 -5.2681 -1.9932 30 6 -0.1336 -5.7541 -1.8403 31 6 -0.2782 -4.7324 -0.6977 32 1 -0.4849 0.8401 0.0004 33 1 0.3555 -2.3881 -0.0002 34 1 3.0175 -4.3214 1.8759 35 1 1.2183 -4.1048 1.9936 36 1 3.6267 -5.9971 -0.5433 37 1 5.2052 -6.7280 -1.1256 38 1 9.0530 -9.9215 -1.2487 39 1 9.0039 -11.8151 0.5342 40 1 4.6696 -9.6340 1.9928 41 1 1.4312 -4.4364 -2.6887 42 1 2.0327 -6.0721 -2.1735 43 1 -0.2145 -6.7902 -1.5116 44 1 -0.7615 -5.5343 -2.7038 45 1 -0.8406 -5.1085 0.1569 46 1 -0.6149 -3.7502 -1.0292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078656313.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:14:33 Heat of formation + Delta-G solvation = 97.371045 kcal Electronic energy + Delta-G solvation = -28770.802159 eV Core-core repulsion = 24855.830802 eV Total energy + Delta-G solvation = -3914.971357 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.09223 -40.68928 -39.22178 -37.68429 -35.07924 -34.11668 -33.20756 -32.35975 -30.51701 -30.20143 -29.32526 -25.49625 -25.11705 -24.25359 -23.91877 -23.73781 -22.14601 -21.25364 -20.87417 -20.13860 -18.82380 -18.14439 -17.39164 -17.13809 -16.60166 -16.29949 -15.62781 -15.40248 -15.23348 -14.91998 -14.58168 -14.48860 -14.10985 -13.79312 -13.63069 -13.34662 -13.22391 -12.81263 -12.80361 -12.65663 -12.43501 -12.08031 -11.82568 -11.64404 -11.36685 -10.93662 -10.82111 -10.69014 -10.64723 -10.33713 -10.16012 -10.07277 -9.83485 -9.68312 -9.51039 -9.36902 -8.88647 -8.81718 -8.74796 -8.48097 -6.94697 -5.78621 -3.06723 0.29565 0.97467 2.09833 2.49315 2.91627 3.13023 3.42923 3.49230 3.50993 3.73193 3.90205 4.30362 4.52779 4.57813 4.61512 4.64406 4.75063 4.84351 4.96898 4.98369 5.05881 5.21883 5.24412 5.27323 5.46098 5.56709 5.65311 5.71925 5.85826 5.92861 5.96729 6.03196 6.04669 6.08010 6.14443 6.20550 6.22928 6.37854 6.43184 6.48893 6.52001 6.66251 6.78442 6.91131 6.94766 7.07121 7.54597 7.70454 7.70557 8.19821 8.40436 9.52058 10.09912 10.44652 11.43828 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002483 C = 0.002301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.706483 B =11272.783675 C =12164.480725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.709 5.709 10 C 0.180 3.820 11 H 0.074 0.926 12 C -0.174 4.174 13 C 0.144 3.856 14 H 0.097 0.903 15 N -0.696 5.696 16 C 0.568 3.432 17 O -0.541 6.541 18 C -0.174 4.174 19 C 0.134 3.866 20 N -0.453 5.453 21 C 0.113 3.887 22 C -0.199 4.199 23 C 0.079 3.921 24 N -0.581 5.581 25 H 0.422 0.578 26 C 0.024 3.976 27 C -0.013 4.013 28 C -0.124 4.124 29 C -0.124 4.124 30 C -0.140 4.140 31 C -0.104 4.104 32 H 0.255 0.745 33 H 0.387 0.613 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.400 0.600 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.181 0.819 40 H 0.145 0.855 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.511 -24.479 -0.758 27.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.347 5.347 10 C 0.067 3.933 11 H 0.092 0.908 12 C -0.217 4.217 13 C 0.038 3.962 14 H 0.115 0.885 15 N -0.346 5.346 16 C 0.355 3.645 17 O -0.419 6.419 18 C -0.181 4.181 19 C -0.037 4.037 20 N -0.161 5.161 21 C -0.018 4.018 22 C -0.224 4.224 23 C -0.052 4.052 24 N -0.184 5.184 25 H 0.260 0.740 26 C -0.085 4.085 27 C -0.042 4.042 28 C -0.126 4.126 29 C -0.161 4.161 30 C -0.177 4.177 31 C -0.142 4.142 32 H 0.065 0.935 33 H 0.222 0.778 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.236 0.764 37 H 0.179 0.821 38 H 0.172 0.828 39 H 0.198 0.802 40 H 0.163 0.837 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.670 -24.393 -0.708 27.497 hybrid contribution -0.151 0.519 0.792 0.959 sum 12.519 -23.874 0.085 26.958 Atomic orbital electron populations 1.69666 1.05093 1.25594 1.57653 1.24745 0.95511 0.97719 1.02908 0.86136 0.78839 0.84179 0.77152 1.20543 1.21900 1.21913 1.19330 0.91083 0.84180 1.42617 0.91107 1.42376 1.05877 0.99608 1.86848 1.21400 0.94487 0.85015 0.92379 0.90825 1.24296 1.01893 0.94948 1.00525 1.21543 0.84906 0.93436 0.96282 0.88546 1.45509 1.24823 1.28592 1.35653 1.17816 0.84343 0.80096 0.82275 1.90773 1.56886 1.64976 1.29236 1.20632 0.98134 0.98874 1.00437 1.22805 0.89489 0.98105 0.93252 1.67196 1.13050 1.07814 1.28033 1.19209 0.95935 0.93557 0.93084 1.20609 0.99938 0.97522 1.04349 1.22079 0.90167 1.00428 0.92541 1.41757 1.20157 1.25378 1.31077 0.73963 1.19008 0.96707 0.92818 0.99985 1.20533 0.92076 0.93190 0.98386 1.23394 0.97687 0.97751 0.93772 1.22652 0.96608 1.00404 0.96476 1.22824 0.97191 0.98710 0.99022 1.22467 0.93516 1.00184 0.98051 0.93537 0.77794 0.92258 0.89498 0.76362 0.82112 0.82771 0.80159 0.83700 0.89509 0.92216 0.90973 0.91864 0.91810 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.62 13.06 55.49 0.72 -26.90 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.52 9.98 -15.06 -0.15 -6.67 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.71 -17.03 5.34 -52.99 -0.28 -17.31 16 10 C 0.18 3.39 4.28 -67.48 -0.29 3.10 16 11 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 12 C -0.17 -3.08 7.68 -25.75 -0.20 -3.28 16 13 C 0.14 2.18 4.08 -67.48 -0.28 1.90 16 14 H 0.10 1.55 7.54 -51.93 -0.39 1.16 16 15 N -0.70 -9.09 4.81 -54.39 -0.26 -9.35 16 16 C 0.57 7.94 7.77 -12.45 -0.10 7.85 16 17 O -0.54 -9.24 16.04 5.29 0.08 -9.16 16 18 C -0.17 -2.09 5.89 -104.78 -0.62 -2.71 16 19 C 0.13 1.52 10.69 -17.14 -0.18 1.34 16 20 N -0.45 -5.68 10.40 -10.70 -0.11 -5.79 16 21 C 0.11 1.27 7.32 -84.80 -0.62 0.65 16 22 C -0.20 -1.61 10.84 -39.53 -0.43 -2.04 16 23 C 0.08 0.41 11.82 -16.79 -0.20 0.21 16 24 N -0.58 -3.53 6.14 -10.66 -0.07 -3.59 16 25 H 0.42 1.24 8.96 -40.82 -0.37 0.88 16 26 C 0.02 0.24 7.27 -83.96 -0.61 -0.37 16 27 C -0.01 -0.14 9.72 -38.79 -0.38 -0.52 16 28 C -0.12 -1.92 0.91 -154.71 -0.14 -2.06 16 29 C -0.12 -1.71 7.59 -26.29 -0.20 -1.90 16 30 C -0.14 -1.86 8.08 -25.75 -0.21 -2.07 16 31 C -0.10 -1.63 7.16 -26.28 -0.19 -1.82 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.39 9.82 6.12 -40.82 -0.25 9.57 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.40 4.43 6.30 -40.82 -0.26 4.18 16 37 H 0.16 1.46 6.38 -52.49 -0.34 1.13 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.18 0.16 8.06 -52.49 -0.42 -0.26 16 40 H 0.15 1.45 7.72 -52.49 -0.41 1.04 16 41 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 0.72 7.50 -51.93 -0.39 0.33 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -34.24 379.96 -10.19 -44.43 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -6.11 Total: 13.63 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -4.88 Total: -8.86 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.00 Total: -62.94 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.08 Total: -9.16 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.24 -10.19 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078656313.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.805 kcal (2) G-P(sol) polarization free energy of solvation -34.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds