Wall clock time and date at job start Tue Mar 31 2020 23:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09002 * 113.66394 * 220.79902 * 13 12 10 15 15 N 1.46498 * 113.66180 * 89.83075 * 13 12 10 16 16 C 1.34779 * 119.99958 * 104.51120 * 15 13 12 17 17 O 1.21643 * 119.99820 * 359.97438 * 16 15 13 18 18 C 1.47065 * 120.00234 * 180.02562 * 16 15 13 19 19 C 1.35902 * 125.42583 * 179.68998 * 18 16 15 20 20 C 1.41434 * 107.67501 * 179.90570 * 19 18 16 21 21 C 1.39838 * 134.34835 * 180.09612 * 20 19 18 22 22 N 1.31561 * 120.03770 * 180.28326 * 21 20 19 23 23 C 1.32367 * 122.32555 * 359.97438 * 22 21 20 24 24 C 1.36642 * 121.64080 * 0.03717 * 23 22 21 25 25 C 1.39433 * 119.01332 * 359.93273 * 24 23 22 26 26 N 1.36878 * 134.32238 * 180.02562 * 25 24 23 27 27 H 0.96996 * 125.58930 * 0.03057 * 26 25 24 28 28 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 29 29 C 1.52907 * 121.14350 * 94.90830 * 28 10 9 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 10 31 31 C 1.52906 * 121.13637 * 346.33941 * 28 10 9 32 32 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 35 35 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 36 36 H 0.96997 * 120.00138 * 284.50333 * 15 13 12 37 37 H 1.08000 * 126.16144 * 0.03409 * 19 18 16 38 38 H 1.07997 * 119.98625 * 0.25622 * 21 20 19 39 39 H 1.07997 * 119.17926 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.49043 * 180.02562 * 24 23 22 41 41 H 1.09001 * 113.66043 * 323.84687 * 29 28 10 42 42 H 1.09000 * 113.66310 * 94.90448 * 29 28 10 43 43 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 44 44 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 45 45 H 1.08996 * 113.66552 * 265.09839 * 31 28 10 46 46 H 1.09001 * 113.66060 * 36.16135 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5463 -3.2850 0.4577 12 6 4.7320 -2.8325 -1.3574 13 6 5.9742 -3.3095 -0.5832 14 1 6.9169 -3.0354 -1.0569 15 7 5.9200 -4.7216 -0.1971 16 6 6.6548 -5.6319 -0.8664 17 8 7.3625 -5.2810 -1.7914 18 6 6.5999 -7.0496 -0.4792 19 6 7.2870 -8.0572 -1.0790 20 6 6.9595 -9.2588 -0.4086 21 6 7.3388 -10.5963 -0.5585 22 7 6.8425 -11.5152 0.2416 23 6 5.9813 -11.2254 1.2041 24 6 5.5548 -9.9458 1.4230 25 6 6.0422 -8.9223 0.6111 26 7 5.8375 -7.5703 0.5501 27 1 5.2528 -7.0611 1.1329 28 6 5.5440 -2.3505 0.5274 29 6 5.8777 -2.6362 1.9920 30 6 7.0249 -1.6212 1.8385 31 6 6.2120 -0.9854 0.6960 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 -0.0007 34 1 4.2070 -3.6346 -1.8762 35 1 4.9191 -1.9681 -1.9945 36 1 5.3554 -5.0015 0.5403 37 1 7.9630 -7.9579 -1.9154 38 1 8.0393 -10.8754 -1.3317 39 1 5.6062 -12.0201 1.8319 40 1 4.8519 -9.7302 2.2140 41 1 5.1016 -2.3172 2.6878 42 1 6.2172 -3.6562 2.1724 43 1 7.9625 -2.0694 1.5095 44 1 7.1489 -0.9674 2.7017 45 1 6.8186 -0.6866 -0.1588 46 1 5.5299 -0.2026 1.0276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078660607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:21 Heat of formation + Delta-G solvation = 97.263742 kcal Electronic energy + Delta-G solvation = -28828.151163 eV Core-core repulsion = 24913.175153 eV Total energy + Delta-G solvation = -3914.976010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.20874 -40.87803 -39.26253 -38.03414 -35.36112 -34.40271 -32.79372 -32.53689 -31.08822 -30.41494 -29.57318 -25.81467 -25.66456 -24.54155 -24.09138 -23.19399 -22.34297 -21.66157 -20.77332 -20.29630 -19.26695 -18.24609 -17.90926 -17.54050 -16.18351 -15.92332 -15.82320 -15.63009 -15.35669 -15.09720 -14.82602 -14.58428 -14.55337 -14.21088 -14.00076 -13.52798 -13.28678 -13.06433 -12.91582 -12.63511 -12.35462 -12.30549 -12.07002 -11.86118 -11.63897 -11.15903 -11.06506 -10.89760 -10.47961 -10.47246 -10.32965 -10.20203 -10.09640 -9.88161 -9.81323 -9.57595 -9.24206 -9.04022 -8.95353 -8.33395 -7.36613 -5.87714 -3.23794 0.27252 1.17062 1.69336 2.38632 2.77955 3.03650 3.27557 3.31465 3.37716 3.59014 4.15548 4.18257 4.36859 4.44956 4.48783 4.57584 4.66816 4.72350 4.76812 4.91646 4.93096 4.97658 5.08342 5.21834 5.37044 5.43737 5.47400 5.47937 5.62383 5.65453 5.76019 5.76952 5.81226 5.91123 5.94948 5.96216 6.08200 6.11158 6.14306 6.23102 6.42228 6.44508 6.47557 6.63498 6.78225 6.82989 7.25382 7.74315 7.87447 7.88177 8.31842 9.09244 9.81723 10.01397 11.30388 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002499 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.448566 B =11203.836248 C =11829.571641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.882 3.118 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.250 4.250 8 H 0.090 0.910 9 N -0.732 5.732 10 C 0.187 3.813 11 H 0.080 0.920 12 C -0.174 4.174 13 C 0.144 3.856 14 H 0.101 0.899 15 N -0.700 5.700 16 C 0.585 3.415 17 O -0.518 6.518 18 C 0.020 3.980 19 C -0.089 4.089 20 C -0.176 4.176 21 C 0.178 3.822 22 N -0.507 5.507 23 C 0.105 3.895 24 C -0.180 4.180 25 C 0.141 3.859 26 N -0.569 5.569 27 H 0.422 0.578 28 C -0.127 4.127 29 C -0.124 4.124 30 C -0.138 4.138 31 C -0.109 4.109 32 H 0.260 0.740 33 H 0.364 0.636 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.396 0.604 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.158 0.842 40 H 0.134 0.866 41 H 0.088 0.912 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -16.855 4.006 23.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.713 3.287 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.108 0.892 9 N -0.372 5.372 10 C 0.075 3.925 11 H 0.098 0.902 12 C -0.216 4.216 13 C 0.039 3.961 14 H 0.119 0.881 15 N -0.349 5.349 16 C 0.370 3.630 17 O -0.394 6.394 18 C -0.089 4.089 19 C -0.117 4.117 20 C -0.183 4.183 21 C 0.010 3.990 22 N -0.217 5.217 23 C -0.043 4.043 24 C -0.203 4.203 25 C 0.023 3.977 26 N -0.174 5.174 27 H 0.260 0.740 28 C -0.130 4.130 29 C -0.161 4.161 30 C -0.176 4.176 31 C -0.147 4.147 32 H 0.071 0.929 33 H 0.198 0.802 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.230 0.770 37 H 0.180 0.820 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.152 0.848 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.316 -17.351 3.374 24.055 hybrid contribution -0.508 2.302 0.812 2.493 sum 15.808 -15.050 4.187 22.224 Atomic orbital electron populations 1.69691 1.05137 1.25970 1.57007 1.24685 0.95231 0.97246 1.01744 0.86597 0.79172 0.85045 0.77934 1.20925 1.21642 1.20307 1.19090 0.80593 0.94714 1.43566 0.89237 1.42696 1.03963 1.01931 1.88660 1.21363 0.88609 0.89970 0.92577 0.90240 1.24273 0.95876 1.01106 1.00314 1.21549 1.00244 0.78113 0.96162 0.88094 1.45503 1.46014 1.07784 1.35633 1.17092 0.80244 0.83040 0.82585 1.90864 1.40481 1.79517 1.28512 1.20343 1.00421 0.93933 0.94157 1.20882 1.01103 0.88943 1.00805 1.19233 1.03162 0.95893 0.99998 1.22537 0.94880 0.86243 0.95360 1.67676 1.11564 1.36673 1.05771 1.22116 0.93133 0.94462 0.94577 1.20834 1.05094 0.92119 1.02274 1.18379 0.97681 0.84014 0.97580 1.41903 1.39772 1.05952 1.29759 0.73950 1.23443 0.98843 0.96646 0.94049 1.22659 0.98506 0.98659 0.96311 1.22818 0.97310 0.98594 0.98860 1.22501 0.98268 0.95433 0.98508 0.92938 0.80177 0.91753 0.89313 0.76974 0.81965 0.82082 0.82498 0.84779 0.89376 0.92259 0.90641 0.91685 0.91414 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.43 13.97 55.49 0.78 -27.65 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.88 21.30 27.73 -169.99 -4.71 16.59 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.17 6.52 56.52 0.37 -5.80 16 7 C -0.25 -6.69 10.46 -15.06 -0.16 -6.85 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.73 -16.04 5.14 -52.99 -0.27 -16.32 16 10 C 0.19 3.21 4.28 -67.48 -0.29 2.92 16 11 H 0.08 1.37 8.12 -51.93 -0.42 0.95 16 12 C -0.17 -2.76 7.68 -25.75 -0.20 -2.96 16 13 C 0.14 1.92 4.07 -67.48 -0.27 1.64 16 14 H 0.10 1.42 7.54 -51.93 -0.39 1.03 16 15 N -0.70 -7.83 4.86 -54.56 -0.27 -8.10 16 16 C 0.58 7.24 7.80 -12.68 -0.10 7.14 16 17 O -0.52 -8.12 16.48 5.24 0.09 -8.03 16 18 C 0.02 0.21 6.97 -82.22 -0.57 -0.36 16 19 C -0.09 -0.90 10.53 -39.20 -0.41 -1.32 16 20 C -0.18 -1.72 6.21 -106.95 -0.66 -2.38 16 21 C 0.18 1.59 11.29 -17.07 -0.19 1.40 16 22 N -0.51 -4.99 10.33 -13.18 -0.14 -5.12 16 23 C 0.10 0.85 11.09 -17.90 -0.20 0.65 16 24 C -0.18 -1.40 10.09 -39.71 -0.40 -1.80 16 25 C 0.14 1.31 7.32 -84.03 -0.62 0.69 16 26 N -0.57 -4.77 6.05 -7.31 -0.04 -4.81 16 27 H 0.42 2.49 8.12 -40.82 -0.33 2.16 16 28 C -0.13 -1.74 0.91 -154.71 -0.14 -1.88 16 29 C -0.12 -1.47 7.60 -26.29 -0.20 -1.67 16 30 C -0.14 -1.59 8.08 -25.75 -0.21 -1.80 16 31 C -0.11 -1.49 7.16 -26.28 -0.19 -1.68 16 32 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 33 H 0.36 7.87 3.98 -40.82 -0.16 7.71 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.40 3.58 7.34 -40.82 -0.30 3.28 16 37 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.16 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.06 0.60 7.51 -51.93 -0.39 0.21 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.09 1.42 6.96 -51.93 -0.36 1.06 16 LS Contribution 379.37 15.07 5.72 5.72 Total: -1.00 -33.29 379.37 -9.94 -43.23 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: -6.18 Total: 12.65 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.91 Total: -8.15 kcal Atomic # 7 Polarization: -62.06 SS G_CDS: 0.06 Total: -62.01 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: 0.09 Total: -8.03 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.71 Total: 16.59 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.29 -9.94 -43.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.494 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds