Wall clock time and date at job start Tue Mar 31 2020 23:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 H 1.09006 * 112.88764 * 333.43495 * 10 9 7 12 12 C 1.53950 * 113.66414 * 104.77943 * 10 9 7 13 13 C 1.53950 * 87.29592 * 139.20642 * 12 10 9 14 14 H 1.09002 * 113.66394 * 220.79902 * 13 12 10 15 15 N 1.46498 * 113.66180 * 89.83075 * 13 12 10 16 16 C 1.34779 * 119.99958 * 104.51120 * 15 13 12 17 17 O 1.21643 * 119.99820 * 359.97438 * 16 15 13 18 18 C 1.47065 * 120.00234 * 180.02562 * 16 15 13 19 19 C 1.35902 * 125.42583 * 179.68998 * 18 16 15 20 20 C 1.41434 * 107.67501 * 179.90570 * 19 18 16 21 21 C 1.39838 * 134.34835 * 180.09612 * 20 19 18 22 22 N 1.31561 * 120.03770 * 180.28326 * 21 20 19 23 23 C 1.32367 * 122.32555 * 359.97438 * 22 21 20 24 24 C 1.36642 * 121.64080 * 0.03717 * 23 22 21 25 25 C 1.39433 * 119.01332 * 359.93273 * 24 23 22 26 26 N 1.36878 * 134.32238 * 180.02562 * 25 24 23 27 27 H 0.96996 * 125.58930 * 0.03057 * 26 25 24 28 28 C 1.52914 * 113.66221 * 201.96938 * 10 9 7 29 29 C 1.52907 * 121.14350 * 94.90830 * 28 10 9 30 30 C 1.53946 * 86.78434 * 209.37620 * 29 28 10 31 31 C 1.52906 * 121.13637 * 346.33941 * 28 10 9 32 32 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 33 33 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 34 34 H 1.08998 * 113.57919 * 253.80886 * 12 10 9 35 35 H 1.08999 * 113.57608 * 24.52728 * 12 10 9 36 36 H 0.96997 * 120.00138 * 284.50333 * 15 13 12 37 37 H 1.08000 * 126.16144 * 0.03409 * 19 18 16 38 38 H 1.07997 * 119.98625 * 0.25622 * 21 20 19 39 39 H 1.07997 * 119.17926 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.49043 * 180.02562 * 24 23 22 41 41 H 1.09001 * 113.66043 * 323.84687 * 29 28 10 42 42 H 1.09000 * 113.66310 * 94.90448 * 29 28 10 43 43 H 1.09000 * 113.58131 * 270.13296 * 30 29 28 44 44 H 1.08999 * 113.65580 * 139.34498 * 30 29 28 45 45 H 1.08996 * 113.66552 * 265.09839 * 31 28 10 46 46 H 1.09001 * 113.66060 * 36.16135 * 31 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 1 3.5463 -3.2850 0.4577 12 6 4.7320 -2.8325 -1.3574 13 6 5.9742 -3.3095 -0.5832 14 1 6.9169 -3.0354 -1.0569 15 7 5.9200 -4.7216 -0.1971 16 6 6.6548 -5.6319 -0.8664 17 8 7.3625 -5.2810 -1.7914 18 6 6.5999 -7.0496 -0.4792 19 6 7.2870 -8.0572 -1.0790 20 6 6.9595 -9.2588 -0.4086 21 6 7.3388 -10.5963 -0.5585 22 7 6.8425 -11.5152 0.2416 23 6 5.9813 -11.2254 1.2041 24 6 5.5548 -9.9458 1.4230 25 6 6.0422 -8.9223 0.6111 26 7 5.8375 -7.5703 0.5501 27 1 5.2528 -7.0611 1.1329 28 6 5.5440 -2.3505 0.5274 29 6 5.8777 -2.6362 1.9920 30 6 7.0249 -1.6212 1.8385 31 6 6.2120 -0.9854 0.6960 32 1 -0.4850 0.8400 0.0004 33 1 3.8646 -0.3621 -0.0007 34 1 4.2070 -3.6346 -1.8762 35 1 4.9191 -1.9681 -1.9945 36 1 5.3554 -5.0015 0.5403 37 1 7.9630 -7.9579 -1.9154 38 1 8.0393 -10.8754 -1.3317 39 1 5.6062 -12.0201 1.8319 40 1 4.8519 -9.7302 2.2140 41 1 5.1016 -2.3172 2.6878 42 1 6.2172 -3.6562 2.1724 43 1 7.9625 -2.0694 1.5095 44 1 7.1489 -0.9674 2.7017 45 1 6.8186 -0.6866 -0.1588 46 1 5.5299 -0.2026 1.0276 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078660607.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:06:20 Heat of formation + Delta-G solvation = 75.032485 kcal Electronic energy + Delta-G solvation = -28829.115183 eV Core-core repulsion = 24913.175153 eV Total energy + Delta-G solvation = -3915.940030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.93211 -41.99816 -40.22300 -38.79221 -36.58156 -35.92212 -34.09544 -33.42120 -32.48082 -31.54413 -30.32002 -26.96882 -26.83410 -25.72413 -25.27923 -23.92091 -23.62726 -22.67485 -21.80399 -21.27075 -20.19279 -19.90544 -18.85021 -18.61914 -17.27821 -16.85797 -16.75696 -16.63063 -16.41697 -16.36003 -15.96123 -15.54460 -15.42526 -15.23232 -14.92657 -14.72976 -14.42968 -14.15656 -14.08569 -13.96212 -13.77595 -13.45696 -13.25347 -12.92942 -12.79685 -12.63635 -12.48014 -12.16285 -12.07835 -11.87565 -11.51129 -11.40311 -11.22109 -11.15226 -10.94098 -10.75262 -10.53839 -10.19589 -9.89345 -9.27815 -9.02180 -8.04481 -5.36986 -0.43953 0.49690 0.91658 1.34636 1.38578 1.45299 1.65323 1.86271 2.14010 2.45905 2.93868 3.25290 3.32511 3.40944 3.51158 3.55604 3.65616 3.69685 3.84364 3.88770 3.93529 3.93803 4.07339 4.16935 4.23892 4.47951 4.53671 4.54955 4.63513 4.71880 4.76191 4.87544 4.89068 4.91325 4.96563 5.01574 5.02029 5.07660 5.13812 5.26221 5.41085 5.43766 5.50184 5.56899 5.75435 5.79274 6.18507 6.20660 6.36307 6.92396 7.06257 7.10824 7.83498 8.02156 9.17019 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017085 B = 0.002499 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.448566 B =11203.836248 C =11829.571641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.948 3.052 4 H -0.282 1.282 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.229 4.229 8 H 0.058 0.942 9 N -0.736 5.736 10 C 0.170 3.830 11 H 0.077 0.923 12 C -0.174 4.174 13 C 0.164 3.836 14 H 0.102 0.898 15 N -0.691 5.691 16 C 0.590 3.410 17 O -0.554 6.554 18 C 0.007 3.993 19 C -0.089 4.089 20 C -0.193 4.193 21 C 0.174 3.826 22 N -0.529 5.529 23 C 0.098 3.902 24 C -0.180 4.180 25 C 0.133 3.867 26 N -0.559 5.559 27 H 0.433 0.567 28 C -0.116 4.116 29 C -0.119 4.119 30 C -0.125 4.125 31 C -0.119 4.119 32 H 0.257 0.743 33 H 0.368 0.632 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.408 0.592 37 H 0.168 0.832 38 H 0.182 0.818 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.307 -17.692 5.287 26.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.224 1.224 6 H -0.171 1.171 7 C -0.360 4.360 8 H 0.076 0.924 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.095 0.905 12 C -0.216 4.216 13 C 0.058 3.942 14 H 0.120 0.880 15 N -0.340 5.340 16 C 0.377 3.623 17 O -0.432 6.432 18 C -0.102 4.102 19 C -0.118 4.118 20 C -0.200 4.200 21 C 0.006 3.994 22 N -0.239 5.239 23 C -0.049 4.049 24 C -0.203 4.203 25 C 0.015 3.985 26 N -0.164 5.164 27 H 0.273 0.727 28 C -0.118 4.118 29 C -0.157 4.157 30 C -0.163 4.163 31 C -0.157 4.157 32 H 0.066 0.934 33 H 0.202 0.798 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.245 0.755 37 H 0.185 0.815 38 H 0.199 0.801 39 H 0.200 0.800 40 H 0.178 0.822 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.108 0.892 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 18.679 -18.229 4.693 26.519 hybrid contribution -1.251 2.360 0.389 2.699 sum 17.428 -15.869 5.082 24.112 Atomic orbital electron populations 1.69871 1.07138 1.26596 1.59811 1.25467 0.96032 1.01115 1.02862 0.85523 0.78923 0.80018 0.78006 1.20841 1.22425 1.17146 1.19067 0.82749 0.93335 1.40866 0.92405 1.42670 1.02238 1.03880 1.88936 1.21678 0.90185 0.88081 0.94057 0.90528 1.24169 0.97226 1.00741 0.99447 1.21235 0.98788 0.79076 0.95140 0.88030 1.45360 1.45988 1.06865 1.35813 1.17256 0.79470 0.83692 0.81861 1.90846 1.42040 1.80226 1.30069 1.20024 1.01795 0.92902 0.95452 1.21062 1.00797 0.89139 1.00764 1.19373 1.03935 0.96147 1.00562 1.22894 0.94952 0.85921 0.95626 1.67729 1.12420 1.37180 1.06567 1.22613 0.92493 0.95459 0.94305 1.21116 1.05158 0.91495 1.02487 1.18662 0.97676 0.84423 0.97764 1.41787 1.39515 1.05801 1.29345 0.72651 1.23286 0.95503 0.97410 0.95585 1.22651 0.98492 1.00305 0.94210 1.22773 0.97269 0.98041 0.98173 1.22560 0.98516 0.94650 0.99952 0.93423 0.79788 0.92600 0.90118 0.75539 0.81458 0.80106 0.80009 0.82234 0.90308 0.89987 0.89225 0.90677 0.90556 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.01 13.97 21.65 0.30 -61.71 16 2 C -0.06 -3.64 5.50 84.86 0.47 -3.17 16 3 Si 0.95 44.23 27.73 68.60 1.90 46.14 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.25 -10.16 6.52 99.48 0.65 -9.52 16 7 C -0.23 -12.50 10.46 84.03 0.88 -11.62 16 8 H 0.06 3.46 8.06 -2.91 -0.02 3.44 16 9 N -0.74 -31.98 5.14 -321.55 -1.65 -33.64 16 10 C 0.17 5.71 4.28 45.28 0.19 5.91 16 11 H 0.08 2.61 8.12 -2.38 -0.02 2.59 16 12 C -0.17 -5.44 7.68 31.23 0.24 -5.20 16 13 C 0.16 4.07 4.07 45.28 0.18 4.25 16 14 H 0.10 2.65 7.54 -2.39 -0.02 2.63 16 15 N -0.69 -14.21 4.86 -444.75 -2.16 -16.38 16 16 C 0.59 13.81 7.80 86.56 0.68 14.49 16 17 O -0.55 -16.86 16.48 -4.17 -0.07 -16.93 16 18 C 0.01 0.15 6.97 39.90 0.28 0.42 16 19 C -0.09 -1.71 10.53 22.51 0.24 -1.48 16 20 C -0.19 -3.52 6.21 -21.37 -0.13 -3.65 16 21 C 0.17 2.88 11.29 85.12 0.96 3.84 16 22 N -0.53 -9.54 10.33 -195.62 -2.02 -11.56 16 23 C 0.10 1.38 11.09 84.24 0.93 2.32 16 24 C -0.18 -2.36 10.09 22.18 0.22 -2.13 16 25 C 0.13 2.21 7.32 39.38 0.29 2.50 16 26 N -0.56 -8.30 6.05 -177.04 -1.07 -9.37 16 27 H 0.43 4.13 8.12 -92.71 -0.75 3.38 16 28 C -0.12 -2.94 0.91 -52.31 -0.05 -2.98 16 29 C -0.12 -2.48 7.60 30.88 0.23 -2.25 16 30 C -0.13 -2.44 8.08 31.23 0.25 -2.19 16 31 C -0.12 -2.95 7.16 30.89 0.22 -2.73 16 32 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 33 H 0.37 15.43 3.98 -92.71 -0.37 15.06 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.41 6.47 7.34 -92.71 -0.68 5.79 16 37 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.18 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.16 1.19 8.06 -2.91 -0.02 1.16 16 41 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.08 1.35 7.51 -2.39 -0.02 1.33 16 43 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.13 6.96 -2.39 -0.02 2.11 16 Total: -1.00 -73.56 379.37 0.50 -73.06 By element: Atomic # 1 Polarization: 34.89 SS G_CDS: -0.82 Total: 34.07 kcal Atomic # 6 Polarization: -9.77 SS G_CDS: 6.09 Total: -3.68 kcal Atomic # 7 Polarization: -126.06 SS G_CDS: -6.61 Total: -132.66 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.07 Total: -16.93 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.90 Total: 46.14 kcal Total: -73.56 0.50 -73.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078660607.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.095 kcal (2) G-P(sol) polarization free energy of solvation -73.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds