Wall clock time and date at job start Tue Mar 31 2020 23:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48497 * 109.47499 * 269.99638 * 3 2 1 5 5 H 1.48499 * 109.47519 * 30.00066 * 3 2 1 6 6 H 1.48503 * 109.46954 * 149.99971 * 3 2 1 7 7 C 1.38809 * 120.00490 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99648 * 0.02562 * 7 2 1 9 9 N 1.36941 * 120.00528 * 180.02562 * 7 2 1 10 10 C 1.46497 * 119.99875 * 180.02562 * 9 7 2 11 11 H 1.08993 * 112.95291 * 23.59502 * 10 9 7 12 12 C 1.53952 * 113.65991 * 252.18446 * 10 9 7 13 13 C 1.53946 * 87.29658 * 270.26194 * 12 10 9 14 14 H 1.08999 * 113.74559 * 220.78239 * 13 12 10 15 15 N 1.46506 * 113.65892 * 89.74398 * 13 12 10 16 16 C 1.34777 * 120.00271 * 107.81402 * 15 13 12 17 17 O 1.21566 * 119.99717 * 0.26793 * 16 15 13 18 18 C 1.47766 * 119.99767 * 179.97438 * 16 15 13 19 19 N 1.32742 * 120.05729 * 359.97438 * 18 16 15 20 20 C 1.31725 * 122.12803 * 179.97438 * 19 18 16 21 21 C 1.38304 * 121.68925 * 359.96873 * 20 19 18 22 22 C 1.39017 * 119.09480 * 0.03067 * 21 20 19 23 23 N 1.37187 * 134.65195 * 179.97438 * 22 21 20 24 24 H 0.96996 * 125.06577 * 359.97407 * 23 22 21 25 25 C 1.36725 * 109.87743 * 180.02562 * 23 22 21 26 26 C 1.34561 * 109.95614 * 359.97438 * 25 23 22 27 27 C 1.40406 * 120.05285 * 179.72145 * 18 16 15 28 28 C 1.52904 * 86.78495 * 335.26627 * 13 12 10 29 29 C 1.52910 * 121.13838 * 259.17852 * 28 13 12 30 30 C 1.53950 * 86.77960 * 209.37932 * 29 28 13 31 31 C 1.52906 * 121.13888 * 150.61282 * 28 13 12 32 32 H 0.97004 * 119.99887 * 0.02562 * 1 2 3 33 33 H 0.96993 * 119.99677 * 0.02562 * 9 7 2 34 34 H 1.09000 * 113.57741 * 155.65705 * 12 10 9 35 35 H 1.08997 * 113.58149 * 24.87244 * 12 10 9 36 36 H 0.96999 * 119.99685 * 287.81068 * 15 13 12 37 37 H 1.07996 * 119.15349 * 179.97438 * 20 19 18 38 38 H 1.08006 * 120.45156 * 180.02562 * 21 20 19 39 39 H 1.08007 * 125.02430 * 179.97438 * 25 23 22 40 40 H 1.07999 * 126.50412 * 180.02562 * 26 25 23 41 41 H 1.08994 * 113.65856 * 323.85428 * 29 28 13 42 42 H 1.09001 * 113.66036 * 94.91098 * 29 28 13 43 43 H 1.09006 * 113.58199 * 270.12708 * 30 29 28 44 44 H 1.09000 * 113.64899 * 139.34681 * 30 29 28 45 45 H 1.09007 * 113.66679 * 265.09816 * 31 28 13 46 46 H 1.09007 * 113.65873 * 36.05681 * 31 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2021 0.0011 10 6 4.1121 -2.4708 0.0011 11 1 3.5283 -3.2987 -0.4011 12 6 4.7941 -2.7904 1.3438 13 6 6.0276 -2.0373 0.8133 14 1 6.9745 -2.5176 1.0594 15 7 6.0186 -0.6048 1.1202 16 6 6.8609 -0.1091 2.0483 17 8 7.6314 -0.8500 2.6273 18 6 6.8522 1.3358 2.3574 19 7 6.0156 2.1468 1.7213 20 6 5.9730 3.4406 1.9648 21 6 6.8010 4.0311 2.9022 22 6 7.7011 3.2377 3.6043 23 7 8.6427 3.4743 4.5736 24 1 8.8410 4.3426 4.9577 25 6 9.2607 2.3040 4.9168 26 6 8.7516 1.2875 4.1971 27 6 7.7250 1.8525 3.3282 28 6 5.5185 -2.3675 -0.5902 29 6 6.1219 -3.5154 -1.4004 30 6 5.7538 -2.7065 -2.6574 31 6 5.8124 -1.4465 -1.7749 32 1 -0.4850 0.8401 -0.0004 33 1 3.8646 -0.3621 0.0014 34 1 4.9679 -3.8548 1.5020 35 1 4.3220 -2.3065 2.1987 36 1 5.4065 -0.0130 0.6554 37 1 5.2736 4.0560 1.4186 38 1 6.7489 5.0940 3.0863 39 1 10.0421 2.2094 5.6564 40 1 9.0450 0.2497 4.2542 41 1 7.1956 -3.6355 -1.2562 42 1 5.5731 -4.4525 -1.3070 43 1 4.7568 -2.9249 -3.0401 44 1 6.5192 -2.7314 -3.4331 45 1 5.0164 -0.7308 -1.9807 46 1 6.7986 -0.9838 -1.7352 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078731949.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:12:22 Heat of formation + Delta-G solvation = 106.521298 kcal Electronic energy + Delta-G solvation = -30099.694196 eV Core-core repulsion = 26185.119623 eV Total energy + Delta-G solvation = -3914.574572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75102 -40.62628 -38.90157 -37.80306 -35.30910 -33.66867 -32.55526 -32.01360 -30.75143 -30.34511 -29.28094 -25.59248 -25.27608 -24.19328 -24.07868 -22.68466 -22.30448 -21.13106 -20.54695 -20.09746 -19.02698 -18.16200 -17.41820 -16.99808 -16.15554 -15.83178 -15.34565 -15.25729 -15.11044 -14.79019 -14.61787 -14.51459 -14.29935 -13.76979 -13.45976 -13.22706 -13.07694 -12.84494 -12.60772 -12.44786 -12.15720 -11.95892 -11.86750 -11.79903 -11.39954 -10.96429 -10.88879 -10.68202 -10.21022 -10.07882 -10.04836 -9.93321 -9.74857 -9.63252 -9.47353 -9.36422 -9.01349 -8.83267 -8.55123 -8.04173 -7.27276 -5.75486 -3.12639 0.41688 1.36577 2.45631 2.74372 2.92699 3.29402 3.43253 3.50054 3.54721 4.00019 4.24665 4.45455 4.58993 4.63079 4.69503 4.81351 4.90925 4.99221 5.07819 5.14121 5.16562 5.29609 5.32362 5.41566 5.46553 5.65219 5.67169 5.80225 5.83698 5.88383 5.95741 5.97954 6.01165 6.16495 6.22424 6.29548 6.32642 6.44367 6.46874 6.59537 6.67564 6.69253 6.77214 6.89384 7.04441 7.15093 7.71253 7.97854 8.03068 8.42691 8.47854 9.20070 9.92557 10.10451 11.41765 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010380 B = 0.004579 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.907382 B = 6113.388186 C = 7898.252316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.008 3.992 3 Si 0.866 3.134 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.723 5.723 10 C 0.197 3.803 11 H 0.075 0.925 12 C -0.183 4.183 13 C 0.133 3.867 14 H 0.096 0.904 15 N -0.681 5.681 16 C 0.573 3.427 17 O -0.537 6.537 18 C 0.137 3.863 19 N -0.464 5.464 20 C 0.102 3.898 21 C -0.161 4.161 22 C 0.117 3.883 23 N -0.590 5.590 24 H 0.418 0.582 25 C 0.043 3.957 26 C -0.166 4.166 27 C -0.111 4.111 28 C -0.132 4.132 29 C -0.104 4.104 30 C -0.134 4.134 31 C -0.129 4.129 32 H 0.259 0.741 33 H 0.359 0.641 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.412 0.588 37 H 0.164 0.836 38 H 0.136 0.864 39 H 0.177 0.823 40 H 0.162 0.838 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.074 0.926 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.195 5.256 5.464 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.188 4.188 3 Si 0.695 3.305 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.176 1.176 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.364 5.364 10 C 0.085 3.915 11 H 0.093 0.907 12 C -0.225 4.225 13 C 0.028 3.972 14 H 0.113 0.887 15 N -0.332 5.332 16 C 0.358 3.642 17 O -0.414 6.414 18 C -0.008 4.008 19 N -0.177 5.177 20 C -0.052 4.052 21 C -0.184 4.184 22 C 0.003 3.997 23 N -0.194 5.194 24 H 0.255 0.745 25 C -0.082 4.082 26 C -0.191 4.191 27 C -0.119 4.119 28 C -0.134 4.134 29 C -0.142 4.142 30 C -0.171 4.171 31 C -0.166 4.166 32 H 0.069 0.931 33 H 0.194 0.806 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.251 0.749 37 H 0.181 0.819 38 H 0.153 0.847 39 H 0.194 0.806 40 H 0.180 0.820 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.093 0.907 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.914 4.456 5.295 21.082 hybrid contribution 0.757 2.555 0.765 2.772 sum 20.672 7.010 6.060 22.653 Atomic orbital electron populations 1.69701 1.05186 1.25849 1.57155 1.24656 0.95223 0.97257 1.01627 0.86784 0.80701 0.84955 0.78074 1.21179 1.21941 1.17622 1.19068 0.80149 0.94854 1.43538 0.88988 1.42508 1.03904 1.01337 1.88696 1.20812 0.88609 0.90011 0.92056 0.90699 1.24255 0.97227 0.99471 1.01568 1.21758 0.99243 0.80512 0.95718 0.88652 1.45652 1.38661 1.09302 1.39599 1.17704 0.80707 0.85871 0.79934 1.90713 1.40337 1.58848 1.51495 1.20728 0.92678 0.94030 0.93391 1.67679 1.19409 1.05335 1.25235 1.22409 0.97033 0.90468 0.95280 1.21186 0.97649 1.00377 0.99193 1.18245 0.93638 0.94640 0.93208 1.41621 1.32861 1.10224 1.34713 0.74471 1.22075 0.99974 0.84297 1.01835 1.21936 0.98631 0.99886 0.98691 1.19834 0.99741 0.92734 0.99587 1.23607 0.99555 0.98237 0.92037 1.22494 1.00103 0.96445 0.95167 1.22754 1.01692 0.96716 0.95947 1.22590 1.01402 0.96929 0.95698 0.93101 0.80598 0.89951 0.90782 0.74906 0.81936 0.84663 0.80611 0.82015 0.90226 0.91100 0.89847 0.92098 0.90696 0.90812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.87 21.57 27.74 -169.99 -4.71 16.86 16 4 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.25 -5.82 6.37 56.52 0.36 -5.46 16 7 C -0.25 -6.86 10.45 -15.06 -0.16 -7.02 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 9 N -0.72 -16.77 4.54 -52.99 -0.24 -17.01 16 10 C 0.20 3.79 4.36 -67.48 -0.29 3.50 16 11 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 12 C -0.18 -3.27 7.68 -25.75 -0.20 -3.47 16 13 C 0.13 2.26 4.13 -67.48 -0.28 1.98 16 14 H 0.10 1.58 7.46 -51.93 -0.39 1.19 16 15 N -0.68 -12.51 4.92 -54.34 -0.27 -12.77 16 16 C 0.57 10.61 7.80 -12.37 -0.10 10.52 16 17 O -0.54 -10.36 14.74 5.31 0.08 -10.28 16 18 C 0.14 2.37 6.78 -82.76 -0.56 1.81 16 19 N -0.46 -7.95 9.54 -9.66 -0.09 -8.04 16 20 C 0.10 1.40 11.13 -17.57 -0.20 1.20 16 21 C -0.16 -1.80 10.14 -39.27 -0.40 -2.20 16 22 C 0.12 1.42 7.34 -84.03 -0.62 0.80 16 23 N -0.59 -5.00 6.04 -10.59 -0.06 -5.06 16 24 H 0.42 1.99 8.96 -40.82 -0.37 1.62 16 25 C 0.04 0.38 11.82 -16.67 -0.20 0.18 16 26 C -0.17 -2.10 10.25 -37.83 -0.39 -2.49 16 27 C -0.11 -1.66 6.15 -104.88 -0.65 -2.31 16 28 C -0.13 -2.11 0.78 -154.71 -0.12 -2.23 16 29 C -0.10 -1.35 7.84 -26.28 -0.21 -1.56 16 30 C -0.13 -1.80 8.08 -25.75 -0.21 -2.01 16 31 C -0.13 -2.01 7.27 -26.29 -0.19 -2.20 16 32 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 33 H 0.36 8.22 3.00 -40.82 -0.12 8.09 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.41 8.06 5.33 -40.82 -0.22 7.84 16 37 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.14 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.18 0.80 8.06 -52.48 -0.42 0.37 16 40 H 0.16 2.10 7.23 -52.49 -0.38 1.73 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.33 7.58 -51.92 -0.39 0.94 16 46 H 0.07 1.09 8.14 -51.92 -0.42 0.66 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -34.64 374.79 -9.84 -44.48 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -6.11 Total: 19.95 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -4.85 Total: -5.35 kcal Atomic # 7 Polarization: -71.42 SS G_CDS: 0.11 Total: -71.31 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.08 Total: -10.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.64 -9.84 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078731949.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.000 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds