Wall clock time and date at job start Tue Mar 31 2020 23:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34848 * 119.67931 * 2 1 4 4 C 1.40573 * 120.34080 * 180.02562 * 3 2 1 5 5 C 1.35892 * 119.73309 * 0.02562 * 4 3 2 6 6 C 1.41196 * 119.34424 * 359.97438 * 5 4 3 7 7 N 1.32228 * 132.04356 * 179.97438 * 6 5 4 8 8 C 1.34591 * 109.02505 * 180.02562 * 7 6 5 9 9 C 1.47585 * 125.92244 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00166 * 180.02562 * 9 8 7 11 11 N 1.34787 * 119.99691 * 0.02562 * 9 8 7 12 12 C 1.47797 * 135.01399 * 0.02562 * 11 9 8 13 13 C 1.54649 * 85.79272 * 153.77287 * 12 11 9 14 14 H 1.09000 * 114.44192 * 140.42179 * 13 12 11 15 15 C 1.53012 * 110.83497 * 270.22944 * 13 12 11 16 16 C 1.53107 * 109.44575 * 143.88776 * 15 13 12 17 17 N 1.46620 * 108.00800 * 301.02413 * 16 15 13 18 18 C 1.36938 * 119.88923 * 237.32958 * 17 16 15 19 19 H 1.07998 * 120.00189 * 24.87341 * 18 17 16 20 20 C 1.38811 * 119.99565 * 204.86898 * 18 17 16 21 21 N 1.31620 * 120.00182 * 14.85979 * 20 18 17 22 22 Si 1.86799 * 119.99835 * 194.85649 * 20 18 17 23 23 H 1.48496 * 109.47174 * 90.00192 * 22 20 18 24 24 H 1.48494 * 109.47369 * 210.00209 * 22 20 18 25 25 H 1.48500 * 109.47275 * 330.00251 * 22 20 18 26 26 C 1.45324 * 119.57098 * 58.80740 * 17 16 15 27 27 C 1.48746 * 135.02358 * 179.85639 * 11 9 8 28 28 H 1.09001 * 111.45471 * 94.81949 * 27 11 9 29 29 C 1.36575 * 108.15573 * 0.25990 * 8 7 6 30 30 N 1.36193 * 107.09897 * 359.58327 * 29 8 7 31 31 H 1.08996 * 109.47162 * 90.00171 * 1 2 3 32 32 H 1.09000 * 109.47193 * 210.00127 * 1 2 3 33 33 H 1.08998 * 109.47082 * 329.99994 * 1 2 3 34 34 H 1.07997 * 119.82676 * 0.04381 * 3 2 1 35 35 H 1.08005 * 120.13374 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.32899 * 179.97438 * 5 4 3 37 37 H 1.09001 * 113.82708 * 39.55472 * 12 11 9 38 38 H 1.09003 * 113.82151 * 267.98740 * 12 11 9 39 39 H 1.08999 * 109.47299 * 23.89493 * 15 13 12 40 40 H 1.08998 * 109.47590 * 263.87867 * 15 13 12 41 41 H 1.09001 * 109.75581 * 60.65194 * 16 15 13 42 42 H 1.08999 * 109.75338 * 181.39858 * 16 15 13 43 43 H 0.96999 * 119.99711 * 179.97438 * 21 20 18 44 44 H 1.09002 * 107.69867 * 198.51697 * 26 17 16 45 45 H 1.08992 * 109.96203 * 80.37532 * 26 17 16 46 46 H 1.08004 * 126.44986 * 179.71083 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0157 -0.0016 6 6 3.5563 -1.2039 -0.0016 7 7 3.9582 -2.4636 -0.0029 8 6 2.8794 -3.2684 -0.0027 9 6 2.9000 -4.7441 -0.0034 10 8 1.8556 -5.3666 -0.0037 11 7 4.0766 -5.4016 -0.0037 12 6 5.4988 -4.9995 -0.0031 13 6 5.7659 -6.3623 0.6774 14 1 6.6676 -6.8691 0.3336 15 6 5.6821 -6.2360 2.2000 16 6 5.0626 -7.5087 2.7837 17 7 3.7303 -7.6756 2.1948 18 6 2.6304 -7.7548 3.0068 19 1 2.6531 -7.3121 3.9916 20 6 1.4863 -8.4042 2.5639 21 7 1.5412 -9.1873 1.5075 22 14 -0.1314 -8.1666 3.4673 23 1 -0.8602 -7.0126 2.8823 24 1 -0.9578 -9.3931 3.3338 25 1 0.1378 -7.9051 4.9041 26 6 3.5926 -7.7878 0.7525 27 6 4.4822 -6.8327 -0.0018 28 1 4.6716 -7.1948 -1.0123 29 6 1.7624 -2.4826 -0.0072 30 7 2.1838 -1.1875 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6267 2.1022 0.0007 35 1 4.1117 2.1281 -0.0010 36 1 5.3479 0.0169 -0.0024 37 1 5.7132 -4.1405 0.6326 38 1 5.9322 -4.9126 -0.9995 39 1 5.0623 -5.3779 2.4599 40 1 6.6831 -6.0986 2.6089 41 1 5.6851 -8.3685 2.5361 42 1 4.9777 -7.4141 3.8662 43 1 0.7417 -9.6413 1.1983 44 1 2.5543 -7.5716 0.5009 45 1 3.8222 -8.8048 0.4348 46 1 0.7377 -2.8240 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084820205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:23 Heat of formation + Delta-G solvation = 126.589602 kcal Electronic energy + Delta-G solvation = -30180.183016 eV Core-core repulsion = 26266.478671 eV Total energy + Delta-G solvation = -3913.704345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.93785 -40.04489 -38.04289 -36.97712 -35.07049 -34.37878 -32.05588 -31.52069 -30.02450 -29.58953 -28.72079 -27.51601 -26.78729 -24.26059 -23.73367 -22.87387 -22.44704 -21.49488 -20.83300 -19.51709 -18.23086 -17.57978 -16.89948 -16.65540 -16.25578 -15.94167 -15.48630 -15.17798 -15.06476 -14.44253 -14.21141 -13.97426 -13.81554 -13.58337 -13.26134 -13.12885 -13.08370 -12.88692 -12.64017 -12.51297 -12.17174 -11.83446 -11.76980 -11.55237 -11.34474 -11.12782 -10.97700 -10.61668 -10.57580 -10.36162 -10.28908 -10.09044 -9.75003 -9.71823 -9.54710 -8.94197 -8.89696 -8.24211 -8.00392 -7.88570 -6.54160 -5.58876 -2.99473 0.46537 1.10799 2.25632 2.33381 3.25540 3.39269 3.51902 3.57756 3.59518 3.95602 4.00057 4.12563 4.47850 4.50659 4.66638 4.75841 4.93462 4.96515 5.03744 5.13159 5.26036 5.31096 5.41259 5.48055 5.57085 5.61923 5.63141 5.68597 5.81686 5.88566 5.91293 5.97458 6.08142 6.21885 6.27075 6.28203 6.40503 6.51660 6.55244 6.65967 6.71744 6.89581 6.91645 7.12407 7.56925 7.67184 7.85417 8.01252 8.43222 8.64684 8.86507 9.42992 10.06975 10.55980 11.49345 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.003908 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.382872 B = 7163.428048 C = 8634.218380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.092 3.908 3 C -0.150 4.150 4 C -0.102 4.102 5 C -0.080 4.080 6 C 0.221 3.779 7 N -0.460 5.460 8 C 0.029 3.971 9 C 0.614 3.386 10 O -0.517 6.517 11 N -0.615 5.615 12 C 0.112 3.888 13 C -0.114 4.114 14 H 0.084 0.916 15 C -0.115 4.115 16 C 0.145 3.855 17 N -0.583 5.583 18 C -0.250 4.250 19 H 0.064 0.936 20 C 0.010 3.990 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.282 1.282 26 C 0.164 3.836 27 C 0.128 3.872 28 H 0.075 0.925 29 C -0.026 4.026 30 N -0.363 5.363 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.142 0.858 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.053 0.947 41 H 0.020 0.980 42 H 0.054 0.946 43 H 0.252 0.748 44 H 0.107 0.893 45 H 0.032 0.968 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.747 21.752 -5.720 23.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.011 4.011 3 C -0.170 4.170 4 C -0.125 4.125 5 C -0.100 4.100 6 C -0.024 4.024 7 N -0.181 5.181 8 C -0.104 4.104 9 C 0.400 3.600 10 O -0.392 6.392 11 N -0.350 5.350 12 C -0.011 4.011 13 C -0.133 4.133 14 H 0.103 0.897 15 C -0.154 4.154 16 C 0.018 3.982 17 N -0.305 5.305 18 C -0.379 4.379 19 H 0.082 0.918 20 C -0.189 4.189 21 N -0.549 5.549 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.219 1.219 25 H -0.208 1.208 26 C 0.038 3.962 27 C 0.025 3.975 28 H 0.092 0.908 29 C -0.160 4.160 30 N -0.036 5.036 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.167 0.833 35 H 0.160 0.840 36 H 0.169 0.831 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.038 0.962 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.125 0.875 45 H 0.050 0.950 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 5.582 21.054 -5.786 22.537 hybrid contribution -1.670 0.557 0.262 1.779 sum 3.912 21.611 -5.524 22.646 Atomic orbital electron populations 1.20971 0.87876 1.04830 1.04052 1.20345 0.95268 0.83735 1.01721 1.20584 0.94778 0.96391 1.05293 1.20989 0.93657 0.98301 0.99594 1.20281 1.00642 0.87597 1.01497 1.21056 0.80000 0.94701 1.06653 1.70921 1.28766 0.97702 1.20726 1.20907 0.88728 0.94848 1.05966 1.16380 0.82928 0.83232 0.77421 1.90879 1.31067 1.67062 1.50204 1.50038 1.04286 1.09271 1.71445 1.23460 0.79894 0.98086 0.99710 1.22867 0.97478 0.95970 0.97032 0.89737 1.21834 0.99523 1.01252 0.92835 1.20781 0.87704 0.93306 0.96431 1.43432 1.01119 1.84799 1.01180 1.19108 0.91236 1.28965 0.98581 0.91840 1.24898 0.98882 0.96845 0.98251 1.70001 1.27624 1.30654 1.26648 0.86316 0.84488 0.77130 0.78968 1.21419 1.21888 1.20751 1.20037 1.00394 0.92977 0.82782 1.23110 0.92886 0.82620 0.98848 0.90754 1.22572 1.01439 0.80050 1.11965 1.42726 1.08921 1.05544 1.46432 0.89599 0.90297 0.89117 0.83349 0.84040 0.83140 0.89680 0.90970 0.92080 0.92850 0.96250 0.92696 0.93825 0.87535 0.95009 0.78993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 9.84 36.01 0.35 -0.48 16 2 C 0.09 0.91 6.78 -81.63 -0.55 0.36 16 3 C -0.15 -1.13 9.58 -39.90 -0.38 -1.51 16 4 C -0.10 -0.77 10.06 -39.54 -0.40 -1.17 16 5 C -0.08 -0.82 10.11 -39.30 -0.40 -1.22 16 6 C 0.22 3.18 7.79 -156.04 -1.22 1.96 16 7 N -0.46 -7.88 9.71 -9.35 -0.09 -7.97 16 8 C 0.03 0.54 6.91 -83.45 -0.58 -0.03 16 9 C 0.61 13.71 8.00 -12.44 -0.10 13.61 16 10 O -0.52 -13.58 16.15 5.29 0.09 -13.49 16 11 N -0.62 -12.60 3.40 -172.73 -0.59 -13.19 16 12 C 0.11 1.81 7.28 -2.57 -0.02 1.79 16 13 C -0.11 -1.93 4.34 -89.98 -0.39 -2.32 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.12 -2.09 5.66 -26.67 -0.15 -2.24 16 16 C 0.14 3.13 6.44 -3.92 -0.03 3.11 16 17 N -0.58 -15.46 3.00 -175.36 -0.53 -15.99 16 18 C -0.25 -7.34 9.56 -15.06 -0.14 -7.48 16 19 H 0.06 1.85 7.84 -52.49 -0.41 1.43 16 20 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 21 N -0.90 -27.92 10.92 55.49 0.61 -27.32 16 22 Si 0.90 23.67 29.58 -169.99 -5.03 18.64 16 23 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.29 -7.62 7.11 56.52 0.40 -7.21 16 25 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 26 C 0.16 4.24 4.69 -5.80 -0.03 4.21 16 27 C 0.13 2.64 4.30 -68.10 -0.29 2.34 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 C -0.03 -0.42 10.78 -16.22 -0.17 -0.59 16 30 N -0.36 -4.97 2.93 -58.17 -0.17 -5.14 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.63 7.47 -51.93 -0.39 0.24 16 33 H 0.09 0.41 8.07 -51.93 -0.42 0.00 16 34 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 0.61 8.06 -52.48 -0.42 0.18 16 36 H 0.15 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.08 1.38 7.27 -51.93 -0.38 1.00 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.25 7.69 -51.93 -0.40 0.85 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.05 1.18 7.88 -51.93 -0.41 0.77 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.11 3.21 4.89 -51.93 -0.25 2.96 16 45 H 0.03 0.87 8.03 -51.93 -0.42 0.45 16 46 H 0.19 2.83 7.78 -52.48 -0.41 2.42 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -37.14 372.36 -11.10 -48.25 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.42 Total: 0.06 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -4.58 Total: 10.52 kcal Atomic # 7 Polarization: -68.83 SS G_CDS: -0.77 Total: -69.60 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.09 Total: -13.49 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.03 Total: 18.64 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.14 -11.10 -48.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084820205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.838 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds