Wall clock time and date at job start Tue Mar 31 2020 23:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34848 * 119.67931 * 2 1 4 4 C 1.40573 * 120.34080 * 180.02562 * 3 2 1 5 5 C 1.35892 * 119.73309 * 0.02562 * 4 3 2 6 6 C 1.41196 * 119.34424 * 359.97438 * 5 4 3 7 7 N 1.32228 * 132.04356 * 179.97438 * 6 5 4 8 8 C 1.34591 * 109.02505 * 180.02562 * 7 6 5 9 9 C 1.47585 * 125.92244 * 180.02562 * 8 7 6 10 10 O 1.21589 * 120.00166 * 180.02562 * 9 8 7 11 11 N 1.34787 * 119.99691 * 0.02562 * 9 8 7 12 12 C 1.47797 * 135.01399 * 0.02562 * 11 9 8 13 13 C 1.54649 * 85.79272 * 153.77287 * 12 11 9 14 14 H 1.09000 * 114.44192 * 140.42179 * 13 12 11 15 15 C 1.53012 * 110.83497 * 270.22944 * 13 12 11 16 16 C 1.53107 * 109.44575 * 143.88776 * 15 13 12 17 17 N 1.46620 * 108.00800 * 301.02413 * 16 15 13 18 18 C 1.36938 * 119.88923 * 237.32958 * 17 16 15 19 19 H 1.07998 * 120.00189 * 24.87341 * 18 17 16 20 20 C 1.38811 * 119.99565 * 204.86898 * 18 17 16 21 21 N 1.31620 * 120.00182 * 14.85979 * 20 18 17 22 22 Si 1.86799 * 119.99835 * 194.85649 * 20 18 17 23 23 H 1.48496 * 109.47174 * 90.00192 * 22 20 18 24 24 H 1.48494 * 109.47369 * 210.00209 * 22 20 18 25 25 H 1.48500 * 109.47275 * 330.00251 * 22 20 18 26 26 C 1.45324 * 119.57098 * 58.80740 * 17 16 15 27 27 C 1.48746 * 135.02358 * 179.85639 * 11 9 8 28 28 H 1.09001 * 111.45471 * 94.81949 * 27 11 9 29 29 C 1.36575 * 108.15573 * 0.25990 * 8 7 6 30 30 N 1.36193 * 107.09897 * 359.58327 * 29 8 7 31 31 H 1.08996 * 109.47162 * 90.00171 * 1 2 3 32 32 H 1.09000 * 109.47193 * 210.00127 * 1 2 3 33 33 H 1.08998 * 109.47082 * 329.99994 * 1 2 3 34 34 H 1.07997 * 119.82676 * 0.04381 * 3 2 1 35 35 H 1.08005 * 120.13374 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.32899 * 179.97438 * 5 4 3 37 37 H 1.09001 * 113.82708 * 39.55472 * 12 11 9 38 38 H 1.09003 * 113.82151 * 267.98740 * 12 11 9 39 39 H 1.08999 * 109.47299 * 23.89493 * 15 13 12 40 40 H 1.08998 * 109.47590 * 263.87867 * 15 13 12 41 41 H 1.09001 * 109.75581 * 60.65194 * 16 15 13 42 42 H 1.08999 * 109.75338 * 181.39858 * 16 15 13 43 43 H 0.96999 * 119.99711 * 179.97438 * 21 20 18 44 44 H 1.09002 * 107.69867 * 198.51697 * 26 17 16 45 45 H 1.08992 * 109.96203 * 80.37532 * 26 17 16 46 46 H 1.08004 * 126.44986 * 179.71083 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1747 1.1716 0.0000 4 6 3.5803 1.1878 -0.0005 5 6 4.2679 0.0157 -0.0016 6 6 3.5563 -1.2039 -0.0016 7 7 3.9582 -2.4636 -0.0029 8 6 2.8794 -3.2684 -0.0027 9 6 2.9000 -4.7441 -0.0034 10 8 1.8556 -5.3666 -0.0037 11 7 4.0766 -5.4016 -0.0037 12 6 5.4988 -4.9995 -0.0031 13 6 5.7659 -6.3623 0.6774 14 1 6.6676 -6.8691 0.3336 15 6 5.6821 -6.2360 2.2000 16 6 5.0626 -7.5087 2.7837 17 7 3.7303 -7.6756 2.1948 18 6 2.6304 -7.7548 3.0068 19 1 2.6531 -7.3121 3.9916 20 6 1.4863 -8.4042 2.5639 21 7 1.5412 -9.1873 1.5075 22 14 -0.1314 -8.1666 3.4673 23 1 -0.8602 -7.0126 2.8823 24 1 -0.9578 -9.3931 3.3338 25 1 0.1378 -7.9051 4.9041 26 6 3.5926 -7.7878 0.7525 27 6 4.4822 -6.8327 -0.0018 28 1 4.6716 -7.1948 -1.0123 29 6 1.7624 -2.4826 -0.0072 30 7 2.1838 -1.1875 -0.0005 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5138 34 1 1.6267 2.1022 0.0007 35 1 4.1117 2.1281 -0.0010 36 1 5.3479 0.0169 -0.0024 37 1 5.7132 -4.1405 0.6326 38 1 5.9322 -4.9126 -0.9995 39 1 5.0623 -5.3779 2.4599 40 1 6.6831 -6.0986 2.6089 41 1 5.6851 -8.3685 2.5361 42 1 4.9777 -7.4141 3.8662 43 1 0.7417 -9.6413 1.1983 44 1 2.5543 -7.5716 0.5009 45 1 3.8222 -8.8048 0.4348 46 1 0.7377 -2.8240 -0.0126 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084820205.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:22 Heat of formation + Delta-G solvation = 102.532701 kcal Electronic energy + Delta-G solvation = -30181.226202 eV Core-core repulsion = 26266.478671 eV Total energy + Delta-G solvation = -3914.747531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.96010 -41.61569 -39.35363 -38.25807 -37.01532 -35.19776 -33.98116 -32.54519 -31.91531 -30.84010 -30.14559 -28.60385 -28.21836 -25.74648 -25.53676 -24.04874 -23.66568 -22.69159 -22.38079 -20.97580 -19.61140 -19.15409 -18.22642 -17.76599 -17.44357 -17.40494 -17.10907 -16.73311 -16.15849 -16.04977 -15.61031 -15.31182 -15.14123 -14.97297 -14.78367 -14.53343 -14.34814 -14.19839 -13.95292 -13.63073 -13.52068 -13.24778 -13.17341 -12.76445 -12.70521 -12.50125 -12.39181 -12.36389 -12.20858 -12.05204 -11.99622 -11.76028 -11.60964 -11.46290 -11.14481 -10.76075 -10.42420 -9.98649 -9.50287 -8.88337 -8.70197 -7.85273 -5.27937 -0.36160 0.18328 1.02993 1.34262 1.34485 1.42347 1.46091 1.94230 2.32676 2.48363 2.58116 2.96925 3.26750 3.30384 3.47913 3.60083 3.72308 3.73993 3.93738 4.01154 4.14420 4.18155 4.22450 4.43741 4.49082 4.53827 4.57062 4.59667 4.61864 4.69667 4.70048 4.74624 4.88082 4.92726 4.99396 5.05385 5.11464 5.12142 5.22181 5.30325 5.31687 5.42823 5.55822 5.57282 5.69678 5.81403 5.96964 6.40005 6.53800 6.86412 7.18695 7.23621 7.95212 8.35495 9.19522 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012439 B = 0.003908 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.382872 B = 7163.428048 C = 8634.218380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.062 3.938 3 C -0.131 4.131 4 C -0.071 4.071 5 C -0.107 4.107 6 C 0.217 3.783 7 N -0.486 5.486 8 C -0.004 4.004 9 C 0.602 3.398 10 O -0.580 6.580 11 N -0.622 5.622 12 C 0.126 3.874 13 C -0.099 4.099 14 H 0.130 0.870 15 C -0.104 4.104 16 C 0.138 3.862 17 N -0.601 5.601 18 C -0.258 4.258 19 H 0.061 0.939 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.956 3.044 23 H -0.300 1.300 24 H -0.287 1.287 25 H -0.263 1.263 26 C 0.179 3.821 27 C 0.113 3.887 28 H 0.095 0.905 29 C -0.037 4.037 30 N -0.364 5.364 31 H 0.094 0.906 32 H 0.059 0.941 33 H 0.122 0.878 34 H 0.195 0.805 35 H 0.189 0.811 36 H 0.170 0.830 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.032 0.968 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.051 0.949 43 H 0.245 0.755 44 H 0.056 0.944 45 H 0.004 0.996 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 26.390 -5.606 28.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.040 4.040 3 C -0.151 4.151 4 C -0.094 4.094 5 C -0.127 4.127 6 C -0.029 4.029 7 N -0.208 5.208 8 C -0.137 4.137 9 C 0.391 3.609 10 O -0.460 6.460 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.117 4.117 14 H 0.148 0.852 15 C -0.143 4.143 16 C 0.013 3.987 17 N -0.324 5.324 18 C -0.389 4.389 19 H 0.079 0.921 20 C -0.240 4.240 21 N -0.578 5.578 22 Si 0.785 3.215 23 H -0.228 1.228 24 H -0.213 1.213 25 H -0.188 1.188 26 C 0.053 3.947 27 C 0.010 3.990 28 H 0.113 0.887 29 C -0.173 4.173 30 N -0.036 5.036 31 H 0.113 0.887 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.212 0.788 35 H 0.206 0.794 36 H 0.187 0.813 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.051 0.949 40 H 0.118 0.882 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.022 0.978 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 8.011 25.726 -5.652 27.531 hybrid contribution -2.366 -0.618 0.235 2.456 sum 5.646 25.108 -5.417 26.299 Atomic orbital electron populations 1.21068 0.86226 1.05429 1.04840 1.21129 0.96833 0.83121 1.02898 1.21281 0.95215 0.96940 1.01661 1.21627 0.93791 0.99043 0.94950 1.20683 1.01792 0.86720 1.03546 1.21758 0.80661 0.95141 1.05371 1.70768 1.28349 0.98771 1.22942 1.20457 0.90597 0.93335 1.09270 1.16971 0.82671 0.84824 0.76479 1.90820 1.33168 1.68754 1.53259 1.50265 1.05654 1.09315 1.70348 1.23600 0.76904 0.97619 1.01361 1.22878 0.96820 0.96170 0.95871 0.85184 1.21711 1.00967 0.97747 0.93828 1.21007 0.85720 0.95593 0.96406 1.43668 1.02443 1.84937 1.01398 1.19399 0.92709 1.27976 0.98784 0.92144 1.25616 1.01811 0.97232 0.99387 1.70166 1.27730 1.31794 1.28135 0.85424 0.80817 0.76481 0.78760 1.22844 1.21272 1.18791 1.19640 0.98880 0.93052 0.83165 1.23113 0.93976 0.82179 0.99691 0.88747 1.22444 1.00826 0.81401 1.12615 1.42826 1.09070 1.05621 1.46044 0.88705 0.92246 0.85929 0.78822 0.79397 0.81252 0.89361 0.87868 0.94919 0.88227 0.94905 0.93000 0.94578 0.92598 0.97797 0.79259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 9.84 71.24 0.70 -0.74 16 2 C 0.06 1.08 6.78 41.02 0.28 1.36 16 3 C -0.13 -1.30 9.58 22.06 0.21 -1.09 16 4 C -0.07 -0.68 10.06 22.29 0.22 -0.46 16 5 C -0.11 -1.86 10.11 22.45 0.23 -1.63 16 6 C 0.22 6.06 7.79 134.21 1.05 7.10 16 7 N -0.49 -16.93 9.71 -183.49 -1.78 -18.71 16 8 C 0.00 -0.17 6.91 40.80 0.28 0.11 16 9 C 0.60 28.93 8.00 86.71 0.69 29.63 16 10 O -0.58 -33.55 16.15 -4.00 -0.06 -33.61 16 11 N -0.62 -26.32 3.40 -818.65 -2.78 -29.10 16 12 C 0.13 3.88 7.28 86.62 0.63 4.51 16 13 C -0.10 -3.11 4.34 -10.32 -0.04 -3.15 16 14 H 0.13 3.05 8.14 -2.39 -0.02 3.03 16 15 C -0.10 -3.58 5.66 30.63 0.17 -3.41 16 16 C 0.14 5.96 6.44 86.39 0.56 6.51 16 17 N -0.60 -33.22 3.00 -708.71 -2.13 -35.34 16 18 C -0.26 -15.92 9.56 84.03 0.80 -15.11 16 19 H 0.06 3.66 7.84 -2.91 -0.02 3.64 16 20 C -0.05 -2.84 4.96 84.86 0.42 -2.42 16 21 N -0.93 -61.15 10.92 21.65 0.24 -60.91 16 22 Si 0.96 51.08 29.58 68.60 2.03 53.10 16 23 H -0.30 -16.58 7.11 99.48 0.71 -15.88 16 24 H -0.29 -14.89 7.11 99.48 0.71 -14.18 16 25 H -0.26 -13.12 7.11 99.48 0.71 -12.41 16 26 C 0.18 9.78 4.69 85.87 0.40 10.19 16 27 C 0.11 4.76 4.30 43.64 0.19 4.94 16 28 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 29 C -0.04 -1.28 10.78 83.63 0.90 -0.38 16 30 N -0.36 -9.88 2.93 -337.95 -0.99 -10.87 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 0.97 7.47 -2.39 -0.02 0.95 16 33 H 0.12 0.66 8.07 -2.39 -0.02 0.64 16 34 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.19 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 37 H 0.09 2.71 7.27 -2.39 -0.02 2.69 16 38 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.03 1.32 7.69 -2.39 -0.02 1.30 16 40 H 0.10 2.58 8.14 -2.39 -0.02 2.57 16 41 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 42 H 0.05 2.23 7.88 -2.39 -0.02 2.21 16 43 H 0.25 15.70 8.31 -92.71 -0.77 14.93 16 44 H 0.06 3.64 4.89 -2.39 -0.01 3.63 16 45 H 0.00 0.25 8.03 -2.39 -0.02 0.23 16 46 H 0.19 6.33 7.78 -2.91 -0.02 6.31 16 Total: -1.00 -92.18 372.36 3.21 -88.97 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 1.00 Total: 10.51 kcal Atomic # 6 Polarization: 28.26 SS G_CDS: 7.70 Total: 35.96 kcal Atomic # 7 Polarization: -147.49 SS G_CDS: -7.45 Total: -154.94 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.06 Total: -33.61 kcal Atomic # 14 Polarization: 51.08 SS G_CDS: 2.03 Total: 53.10 kcal Total: -92.18 3.21 -88.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084820205.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.507 kcal (2) G-P(sol) polarization free energy of solvation -92.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds