Wall clock time and date at job start Tue Mar 31 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53776 * 111.85666 * 2 1 4 4 N 1.47216 * 106.37675 * 140.60950 * 3 2 1 5 5 C 1.36941 * 126.70083 * 148.74431 * 4 3 2 6 6 H 1.08002 * 119.99971 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99861 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47029 * 59.99987 * 9 7 5 11 11 H 1.48492 * 109.47192 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47241 * 300.00303 * 9 7 5 13 13 C 1.46509 * 106.97005 * 329.55288 * 4 3 2 14 14 C 1.53778 * 106.73160 * 29.90074 * 13 4 3 15 15 H 1.08997 * 112.60303 * 220.36147 * 14 13 4 16 16 C 1.53791 * 109.34770 * 95.36122 * 14 13 4 17 17 N 1.47209 * 106.37896 * 228.51925 * 16 14 13 18 18 C 1.34775 * 126.70214 * 211.23955 * 17 16 14 19 19 O 1.21650 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.47276 * 119.99974 * 0.02562 * 18 17 16 21 21 C 1.38436 * 120.02718 * 180.02562 * 20 18 17 22 22 C 1.40664 * 118.26675 * 179.97438 * 21 20 18 23 23 C 1.38260 * 133.39853 * 180.02562 * 22 21 20 24 24 C 1.39684 * 106.99263 * 180.02562 * 23 22 21 25 25 C 1.35640 * 108.08250 * 0.22905 * 24 23 22 26 26 N 1.35917 * 109.06179 * 359.62548 * 25 24 23 27 27 C 1.36904 * 132.42351 * 180.10673 * 26 25 24 28 28 N 1.29795 * 121.47606 * 180.29250 * 27 26 25 29 29 C 1.47219 * 106.59753 * 31.49462 * 17 16 14 30 30 H 1.08998 * 109.47331 * 302.06240 * 1 2 3 31 31 H 1.09001 * 109.46774 * 62.06910 * 1 2 3 32 32 H 1.09007 * 109.46772 * 182.06237 * 1 2 3 33 33 H 1.09008 * 110.07323 * 259.83674 * 3 2 1 34 34 H 1.08994 * 110.07814 * 21.32358 * 3 2 1 35 35 H 0.97002 * 119.99744 * 180.02562 * 8 7 5 36 36 H 1.09000 * 108.72823 * 271.19206 * 13 4 3 37 37 H 1.09005 * 111.06704 * 149.89546 * 13 4 3 38 38 H 1.09000 * 110.07419 * 109.28634 * 16 14 13 39 39 H 1.09008 * 110.06875 * 347.74849 * 16 14 13 40 40 H 1.07998 * 120.86732 * 0.02562 * 21 20 18 41 41 H 1.07993 * 126.50395 * 0.02562 * 23 22 21 42 42 H 1.08002 * 125.95432 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.47093 * 179.77789 * 25 24 23 44 44 H 1.07994 * 119.26175 * 0.29408 * 27 26 25 45 45 H 1.08998 * 110.07366 * 87.72782 * 29 17 16 46 46 H 1.08999 * 110.07571 * 209.27519 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 3.2702 1.4061 0.8963 5 6 4.4003 2.1717 0.7864 6 1 4.4961 2.8798 -0.0234 7 6 5.4230 2.0368 1.7153 8 7 5.3068 1.1727 2.7013 9 14 6.9649 3.0806 1.5650 10 1 6.5989 4.5179 1.6404 11 1 7.8970 2.7489 2.6722 12 1 7.6240 2.8053 0.2630 13 6 3.0039 0.3940 1.9216 14 6 2.1091 -0.6728 1.2688 15 1 1.3241 -1.0270 1.9369 16 6 2.9854 -1.8264 0.7527 17 7 2.5539 -2.0890 -0.6300 18 6 2.5694 -3.2767 -1.2669 19 8 2.1826 -3.3549 -2.4176 20 6 3.0547 -4.4798 -0.5698 21 6 3.0714 -5.6999 -1.2236 22 6 3.5428 -6.8248 -0.5228 23 6 3.6944 -8.1577 -0.8576 24 6 4.2163 -8.8038 0.2655 25 6 4.3683 -7.8820 1.2489 26 7 3.9679 -6.6686 0.7856 27 6 3.9202 -5.4288 1.3643 28 7 3.4848 -4.3935 0.7138 29 6 2.1078 -0.7997 -1.1833 30 1 -0.3634 0.5455 0.8709 31 1 -0.3633 0.4814 -0.9080 32 1 -0.3633 -1.0271 0.0370 33 1 2.4095 1.7072 -1.0078 34 1 1.3568 2.1295 0.3723 35 1 6.0213 1.0788 3.3505 36 1 2.4783 0.8663 2.7515 37 1 3.9303 -0.0595 2.2744 38 1 2.8347 -2.7143 1.3667 39 1 4.0355 -1.5343 0.7679 40 1 2.7322 -5.7857 -2.2453 41 1 3.4547 -8.6128 -1.8071 42 1 4.4532 -9.8549 0.3394 43 1 4.7489 -8.0799 2.2400 44 1 4.2524 -5.3096 2.3850 45 1 2.9528 -0.2677 -1.6204 46 1 1.3372 -0.9625 -1.9368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091777968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:35 Heat of formation + Delta-G solvation = 99.906690 kcal Electronic energy + Delta-G solvation = -29895.644096 eV Core-core repulsion = 25980.782692 eV Total energy + Delta-G solvation = -3914.861403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.58503 -40.19681 -38.58167 -37.36038 -34.92801 -33.32283 -32.84414 -31.20114 -30.75842 -29.93404 -28.77462 -26.54982 -25.77647 -25.11048 -24.39658 -23.41355 -22.21697 -21.39685 -20.08081 -19.80489 -18.65052 -18.49180 -17.10084 -16.71601 -16.23767 -16.03518 -15.71261 -15.37778 -15.09731 -14.66765 -14.54933 -14.28629 -13.81499 -13.50362 -13.36051 -12.98058 -12.79706 -12.74185 -12.67173 -12.43194 -12.32001 -12.08414 -11.67581 -11.65843 -11.31179 -10.92010 -10.84191 -10.79698 -10.69728 -10.48535 -10.14731 -10.08036 -9.89818 -9.73570 -9.54404 -9.46049 -9.21193 -8.68302 -8.29534 -7.70380 -6.88183 -5.66209 -3.10420 0.25158 0.97695 2.31674 2.60439 2.70937 3.17164 3.39153 3.43561 3.44352 3.65069 3.82560 4.35445 4.41324 4.46864 4.58188 4.90837 4.93054 5.06263 5.13690 5.21796 5.25345 5.35788 5.47880 5.48881 5.65955 5.76552 5.80474 5.87257 5.90035 5.96919 6.00435 6.12200 6.22485 6.30412 6.36127 6.39265 6.44138 6.48740 6.54708 6.68586 6.78420 6.82337 6.87932 6.98185 7.42613 7.46869 7.59868 7.82518 7.87809 8.32942 8.38153 9.20816 9.80404 10.47413 11.34808 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.003340 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.800104 B = 8381.968006 C = 9665.100102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 C 0.146 3.854 4 N -0.595 5.595 5 C -0.218 4.218 6 H 0.077 0.923 7 C -0.011 4.011 8 N -0.921 5.921 9 Si 0.915 3.085 10 H -0.286 1.286 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.146 3.854 14 C -0.118 4.118 15 H 0.075 0.925 16 C 0.108 3.892 17 N -0.589 5.589 18 C 0.588 3.412 19 O -0.552 6.552 20 C 0.022 3.978 21 C -0.046 4.046 22 C 0.029 3.971 23 C -0.176 4.176 24 C -0.148 4.148 25 C -0.029 4.029 26 N -0.387 5.387 27 C 0.306 3.694 28 N -0.454 5.454 29 C 0.124 3.876 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.006 0.994 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.077 0.923 40 H 0.162 0.838 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.176 0.824 44 H 0.210 0.790 45 H 0.073 0.927 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 -17.938 -1.403 18.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.092 4.092 3 C 0.019 3.981 4 N -0.318 5.318 5 C -0.347 4.347 6 H 0.095 0.905 7 C -0.206 4.206 8 N -0.570 5.570 9 Si 0.745 3.255 10 H -0.212 1.212 11 H -0.216 1.216 12 H -0.212 1.212 13 C 0.021 3.979 14 C -0.139 4.139 15 H 0.094 0.906 16 C -0.014 4.014 17 N -0.319 5.319 18 C 0.376 3.624 19 O -0.432 6.432 20 C -0.095 4.095 21 C -0.068 4.068 22 C -0.076 4.076 23 C -0.201 4.201 24 C -0.170 4.170 25 C -0.160 4.160 26 N -0.060 5.060 27 C 0.024 3.976 28 N -0.166 5.166 29 C 0.002 3.998 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.041 0.959 35 H 0.063 0.937 36 H 0.024 0.976 37 H 0.144 0.856 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.180 0.820 41 H 0.168 0.832 42 H 0.169 0.831 43 H 0.193 0.807 44 H 0.226 0.774 45 H 0.091 0.909 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.114 -16.831 -1.556 17.659 hybrid contribution 0.866 -0.167 -0.288 0.928 sum -4.248 -16.998 -1.843 17.617 Atomic orbital electron populations 1.21661 0.93846 1.01050 1.01588 1.22231 0.94832 0.97337 0.94782 1.21367 0.90110 0.91962 0.94686 1.44337 1.15246 1.43088 1.29159 1.19045 0.92427 1.14102 1.09091 0.90498 1.24747 0.98713 0.99780 0.97341 1.69615 1.33018 1.37933 1.16407 0.86147 0.82657 0.79667 0.77003 1.21236 1.21566 1.21239 1.21818 0.99122 0.87525 0.89475 1.23138 0.97872 0.96780 0.96114 0.90648 1.22719 0.99184 0.98868 0.80647 1.48395 1.61027 1.06734 1.15700 1.16982 0.78907 0.81386 0.85119 1.90791 1.50257 1.85350 1.16805 1.20821 1.03960 0.94179 0.90564 1.21633 0.95035 0.89023 1.01090 1.18896 1.07495 0.95997 0.85258 1.21134 1.07885 0.90498 1.00624 1.21041 1.03617 0.99559 0.92830 1.21997 1.10228 0.82150 1.01645 1.43247 1.42162 1.08376 1.12188 1.25068 0.95575 0.77458 0.99501 1.68545 1.12644 1.26761 1.08645 1.22186 0.99134 0.82593 0.95935 0.92287 0.92796 0.93188 0.93915 0.95941 0.93657 0.97628 0.85627 0.88113 0.90452 0.82039 0.83194 0.83139 0.80653 0.77394 0.90894 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.45 37.16 0.31 -1.51 16 2 C -0.09 -1.58 1.09 -152.57 -0.17 -1.75 16 3 C 0.15 2.98 6.25 -3.25 -0.02 2.96 16 4 N -0.59 -14.71 3.37 -171.69 -0.58 -15.29 16 5 C -0.22 -5.92 10.33 -15.06 -0.16 -6.07 16 6 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 7 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 8 N -0.92 -25.72 10.06 55.49 0.56 -25.17 16 9 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 C 0.15 3.40 5.46 -3.63 -0.02 3.38 16 14 C -0.12 -2.21 3.69 -88.83 -0.33 -2.54 16 15 H 0.08 1.29 7.88 -51.93 -0.41 0.88 16 16 C 0.11 1.97 5.74 -3.24 -0.02 1.95 16 17 N -0.59 -10.78 3.32 -172.71 -0.57 -11.35 16 18 C 0.59 10.68 7.84 -12.59 -0.10 10.59 16 19 O -0.55 -11.04 16.57 5.23 0.09 -10.95 16 20 C 0.02 0.35 6.75 -82.43 -0.56 -0.21 16 21 C -0.05 -0.61 9.72 -38.59 -0.38 -0.99 16 22 C 0.03 0.34 6.78 -83.95 -0.57 -0.23 16 23 C -0.18 -1.70 10.98 -39.03 -0.43 -2.13 16 24 C -0.15 -1.18 10.80 -39.97 -0.43 -1.61 16 25 C -0.03 -0.23 11.61 -16.67 -0.19 -0.42 16 26 N -0.39 -4.07 2.95 -62.17 -0.18 -4.25 16 27 C 0.31 3.26 12.16 -89.23 -1.09 2.17 16 28 N -0.45 -6.38 6.60 -10.43 -0.07 -6.44 16 29 C 0.12 2.24 6.15 -3.09 -0.02 2.22 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.04 0.86 7.56 -51.92 -0.39 0.46 16 34 H 0.02 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.13 3.24 4.86 -51.93 -0.25 2.99 16 38 H 0.10 1.68 5.41 -51.93 -0.28 1.40 16 39 H 0.08 1.65 7.39 -51.92 -0.38 1.27 16 40 H 0.16 2.02 7.66 -52.49 -0.40 1.62 16 41 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 42 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 44 H 0.21 1.35 8.06 -52.49 -0.42 0.93 16 45 H 0.07 1.44 7.47 -51.93 -0.39 1.05 16 46 H 0.07 1.24 7.61 -51.93 -0.40 0.84 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -32.44 367.69 -10.73 -43.17 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.24 Total: 2.62 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -4.25 Total: 5.42 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.85 Total: -62.50 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.95 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.44 -10.73 -43.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091777968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.074 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.167 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds