Wall clock time and date at job start Tue Mar 31 2020 23:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53776 * 111.85666 * 2 1 4 4 N 1.47216 * 106.37675 * 140.60950 * 3 2 1 5 5 C 1.36941 * 126.70083 * 148.74431 * 4 3 2 6 6 H 1.08002 * 119.99971 * 359.97438 * 5 4 3 7 7 C 1.38815 * 119.99872 * 180.02562 * 5 4 3 8 8 N 1.31619 * 119.99861 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00053 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47029 * 59.99987 * 9 7 5 11 11 H 1.48492 * 109.47192 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47241 * 300.00303 * 9 7 5 13 13 C 1.46509 * 106.97005 * 329.55288 * 4 3 2 14 14 C 1.53778 * 106.73160 * 29.90074 * 13 4 3 15 15 H 1.08997 * 112.60303 * 220.36147 * 14 13 4 16 16 C 1.53791 * 109.34770 * 95.36122 * 14 13 4 17 17 N 1.47209 * 106.37896 * 228.51925 * 16 14 13 18 18 C 1.34775 * 126.70214 * 211.23955 * 17 16 14 19 19 O 1.21650 * 119.99919 * 180.02562 * 18 17 16 20 20 C 1.47276 * 119.99974 * 0.02562 * 18 17 16 21 21 C 1.38436 * 120.02718 * 180.02562 * 20 18 17 22 22 C 1.40664 * 118.26675 * 179.97438 * 21 20 18 23 23 C 1.38260 * 133.39853 * 180.02562 * 22 21 20 24 24 C 1.39684 * 106.99263 * 180.02562 * 23 22 21 25 25 C 1.35640 * 108.08250 * 0.22905 * 24 23 22 26 26 N 1.35917 * 109.06179 * 359.62548 * 25 24 23 27 27 C 1.36904 * 132.42351 * 180.10673 * 26 25 24 28 28 N 1.29795 * 121.47606 * 180.29250 * 27 26 25 29 29 C 1.47219 * 106.59753 * 31.49462 * 17 16 14 30 30 H 1.08998 * 109.47331 * 302.06240 * 1 2 3 31 31 H 1.09001 * 109.46774 * 62.06910 * 1 2 3 32 32 H 1.09007 * 109.46772 * 182.06237 * 1 2 3 33 33 H 1.09008 * 110.07323 * 259.83674 * 3 2 1 34 34 H 1.08994 * 110.07814 * 21.32358 * 3 2 1 35 35 H 0.97002 * 119.99744 * 180.02562 * 8 7 5 36 36 H 1.09000 * 108.72823 * 271.19206 * 13 4 3 37 37 H 1.09005 * 111.06704 * 149.89546 * 13 4 3 38 38 H 1.09000 * 110.07419 * 109.28634 * 16 14 13 39 39 H 1.09008 * 110.06875 * 347.74849 * 16 14 13 40 40 H 1.07998 * 120.86732 * 0.02562 * 21 20 18 41 41 H 1.07993 * 126.50395 * 0.02562 * 23 22 21 42 42 H 1.08002 * 125.95432 * 179.97438 * 24 23 22 43 43 H 1.08000 * 125.47093 * 179.77789 * 25 24 23 44 44 H 1.07994 * 119.26175 * 0.29408 * 27 26 25 45 45 H 1.08998 * 110.07366 * 87.72782 * 29 17 16 46 46 H 1.08999 * 110.07571 * 209.27519 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1025 1.4272 0.0000 4 7 3.2702 1.4061 0.8963 5 6 4.4003 2.1717 0.7864 6 1 4.4961 2.8798 -0.0234 7 6 5.4230 2.0368 1.7153 8 7 5.3068 1.1727 2.7013 9 14 6.9649 3.0806 1.5650 10 1 6.5989 4.5179 1.6404 11 1 7.8970 2.7489 2.6722 12 1 7.6240 2.8053 0.2630 13 6 3.0039 0.3940 1.9216 14 6 2.1091 -0.6728 1.2688 15 1 1.3241 -1.0270 1.9369 16 6 2.9854 -1.8264 0.7527 17 7 2.5539 -2.0890 -0.6300 18 6 2.5694 -3.2767 -1.2669 19 8 2.1826 -3.3549 -2.4176 20 6 3.0547 -4.4798 -0.5698 21 6 3.0714 -5.6999 -1.2236 22 6 3.5428 -6.8248 -0.5228 23 6 3.6944 -8.1577 -0.8576 24 6 4.2163 -8.8038 0.2655 25 6 4.3683 -7.8820 1.2489 26 7 3.9679 -6.6686 0.7856 27 6 3.9202 -5.4288 1.3643 28 7 3.4848 -4.3935 0.7138 29 6 2.1078 -0.7997 -1.1833 30 1 -0.3634 0.5455 0.8709 31 1 -0.3633 0.4814 -0.9080 32 1 -0.3633 -1.0271 0.0370 33 1 2.4095 1.7072 -1.0078 34 1 1.3568 2.1295 0.3723 35 1 6.0213 1.0788 3.3505 36 1 2.4783 0.8663 2.7515 37 1 3.9303 -0.0595 2.2744 38 1 2.8347 -2.7143 1.3667 39 1 4.0355 -1.5343 0.7679 40 1 2.7322 -5.7857 -2.2453 41 1 3.4547 -8.6128 -1.8071 42 1 4.4532 -9.8549 0.3394 43 1 4.7489 -8.0799 2.2400 44 1 4.2524 -5.3096 2.3850 45 1 2.9528 -0.2677 -1.6204 46 1 1.3372 -0.9625 -1.9368 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091777968.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:35 Heat of formation + Delta-G solvation = 83.106920 kcal Electronic energy + Delta-G solvation = -29896.372588 eV Core-core repulsion = 25980.782692 eV Total energy + Delta-G solvation = -3915.589896 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.36038 -41.63682 -39.95937 -38.36597 -36.62630 -34.55871 -34.16585 -32.55733 -31.93594 -31.62767 -29.73979 -27.85259 -27.49890 -26.74084 -25.30245 -24.64472 -23.59945 -22.13505 -21.82738 -20.94831 -20.17175 -19.48621 -18.67330 -18.11462 -17.42535 -17.09057 -16.82774 -16.70369 -16.45248 -16.15953 -15.85787 -15.51208 -15.27439 -14.95845 -14.79569 -14.29466 -14.06141 -13.85764 -13.55031 -13.48448 -13.39814 -13.30770 -13.28452 -13.15961 -12.96860 -12.71982 -12.53692 -12.36089 -11.97647 -11.85966 -11.74443 -11.70620 -11.50809 -11.35296 -11.21562 -10.84950 -10.58825 -9.92406 -9.75990 -8.87196 -8.55625 -7.72237 -5.18853 -0.68937 0.17448 1.47353 1.49496 1.53749 1.55550 1.59933 1.86920 1.96613 2.50508 2.58881 2.88858 3.31952 3.35291 3.56579 3.61511 3.66332 3.76959 3.88444 3.96381 4.05781 4.27258 4.30121 4.34016 4.43605 4.46177 4.55968 4.61807 4.65247 4.69252 4.81460 4.83149 4.98997 5.02817 5.12350 5.15118 5.16687 5.21413 5.27316 5.33260 5.43703 5.51731 5.52574 5.62103 5.75500 5.87437 6.18423 6.40559 6.43473 6.58534 6.97867 7.15574 7.80727 8.47249 9.26222 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.012854 B = 0.003340 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.800104 B = 8381.968006 C = 9665.100102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.078 4.078 3 C 0.142 3.858 4 N -0.616 5.616 5 C -0.236 4.236 6 H 0.077 0.923 7 C -0.061 4.061 8 N -0.941 5.941 9 Si 0.976 3.024 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.283 1.283 13 C 0.153 3.847 14 C -0.109 4.109 15 H 0.099 0.901 16 C 0.125 3.875 17 N -0.595 5.595 18 C 0.585 3.415 19 O -0.581 6.581 20 C -0.018 4.018 21 C -0.033 4.033 22 C -0.018 4.018 23 C -0.161 4.161 24 C -0.155 4.155 25 C -0.004 4.004 26 N -0.398 5.398 27 C 0.318 3.682 28 N -0.488 5.488 29 C 0.125 3.875 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.248 0.752 36 H -0.016 1.016 37 H 0.099 0.901 38 H 0.121 0.879 39 H 0.038 0.962 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.183 0.817 43 H 0.217 0.783 44 H 0.249 0.751 45 H 0.048 0.952 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.231 -20.657 -0.578 21.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.081 4.081 3 C 0.016 3.984 4 N -0.340 5.340 5 C -0.365 4.365 6 H 0.095 0.905 7 C -0.254 4.254 8 N -0.590 5.590 9 Si 0.804 3.196 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.210 1.210 13 C 0.027 3.973 14 C -0.130 4.130 15 H 0.118 0.882 16 C 0.003 3.997 17 N -0.323 5.323 18 C 0.376 3.624 19 O -0.463 6.463 20 C -0.133 4.133 21 C -0.055 4.055 22 C -0.121 4.121 23 C -0.187 4.187 24 C -0.177 4.177 25 C -0.135 4.135 26 N -0.072 5.072 27 C 0.036 3.964 28 N -0.201 5.201 29 C 0.003 3.997 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.002 0.998 37 H 0.117 0.883 38 H 0.138 0.862 39 H 0.057 0.943 40 H 0.177 0.823 41 H 0.183 0.817 42 H 0.201 0.799 43 H 0.233 0.767 44 H 0.265 0.735 45 H 0.066 0.934 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.320 -19.541 -0.759 20.266 hybrid contribution 1.003 0.414 -0.537 1.211 sum -4.317 -19.127 -1.297 19.651 Atomic orbital electron populations 1.21615 0.90822 1.02037 1.02872 1.22168 0.96986 0.95099 0.93808 1.21528 0.89040 0.93960 0.93853 1.44582 1.15869 1.43300 1.30257 1.19359 0.93567 1.14459 1.09092 0.90513 1.25503 1.01333 1.01170 0.97379 1.69856 1.33416 1.38942 1.16806 0.85198 0.79303 0.78351 0.76718 1.20617 1.21650 1.20991 1.21579 0.98450 0.88090 0.89141 1.23027 0.97691 0.95616 0.96642 0.88246 1.22446 0.96718 0.99342 0.81173 1.48417 1.61410 1.06908 1.15613 1.17479 0.78047 0.82016 0.84902 1.90745 1.51636 1.85948 1.17978 1.20387 1.07637 0.93423 0.91898 1.21665 0.93753 0.89207 1.00905 1.19007 1.10268 0.96352 0.86463 1.21605 1.05562 0.89741 1.01815 1.21532 1.03083 1.01174 0.91904 1.22873 1.06802 0.80801 1.03059 1.43425 1.42805 1.09072 1.11852 1.25731 0.93517 0.76924 1.00241 1.68327 1.14734 1.28729 1.08335 1.22108 0.98465 0.82777 0.96373 0.91492 0.91121 0.92262 0.93997 0.95100 0.94196 0.99796 0.88350 0.86169 0.94338 0.82342 0.81672 0.79946 0.76658 0.73534 0.93383 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.19 8.45 71.98 0.61 -2.58 16 2 C -0.08 -2.77 1.09 -50.93 -0.06 -2.82 16 3 C 0.14 5.89 6.25 86.50 0.54 6.43 16 4 N -0.62 -31.48 3.37 -697.12 -2.35 -33.83 16 5 C -0.24 -13.17 10.33 84.03 0.87 -12.30 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.06 -3.41 5.49 84.86 0.47 -2.95 16 8 N -0.94 -54.30 10.06 21.65 0.22 -54.08 16 9 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.15 7.37 5.46 86.64 0.47 7.85 16 14 C -0.11 -4.12 3.69 -9.63 -0.04 -4.16 16 15 H 0.10 3.29 7.88 -2.39 -0.02 3.27 16 16 C 0.13 4.73 5.74 86.51 0.50 5.22 16 17 N -0.59 -22.47 3.32 -818.57 -2.72 -25.19 16 18 C 0.59 22.10 7.84 86.62 0.68 22.78 16 19 O -0.58 -24.16 16.57 -4.19 -0.07 -24.23 16 20 C -0.02 -0.57 6.75 40.98 0.28 -0.29 16 21 C -0.03 -0.89 9.72 22.91 0.22 -0.67 16 22 C -0.02 -0.39 6.78 38.69 0.26 -0.13 16 23 C -0.16 -2.66 10.98 22.62 0.25 -2.41 16 24 C -0.16 -1.79 10.80 22.02 0.24 -1.55 16 25 C 0.00 -0.05 11.61 83.46 0.97 0.92 16 26 N -0.40 -7.32 2.95 -350.61 -1.04 -8.35 16 27 C 0.32 6.19 12.16 179.86 2.19 8.38 16 28 N -0.49 -13.71 6.60 -186.90 -1.23 -14.94 16 29 C 0.13 4.66 6.15 86.60 0.53 5.19 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.04 1.72 7.56 -2.38 -0.02 1.70 16 34 H 0.03 1.24 7.87 -2.39 -0.02 1.22 16 35 H 0.25 13.93 8.31 -92.71 -0.77 13.16 16 36 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.10 5.34 4.86 -2.38 -0.01 5.33 16 38 H 0.12 4.07 5.41 -2.39 -0.01 4.05 16 39 H 0.04 1.74 7.39 -2.38 -0.02 1.73 16 40 H 0.16 4.15 7.66 -2.91 -0.02 4.13 16 41 H 0.17 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.18 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.22 0.60 8.06 -2.91 -0.02 0.58 16 44 H 0.25 2.43 8.06 -2.91 -0.02 2.41 16 45 H 0.05 2.00 7.47 -2.39 -0.02 1.98 16 46 H 0.08 2.84 7.61 -2.39 -0.02 2.82 16 Total: -1.00 -74.44 367.69 4.82 -69.62 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: 1.00 Total: 16.51 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 8.98 Total: 26.91 kcal Atomic # 7 Polarization: -129.28 SS G_CDS: -7.12 Total: -136.40 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -74.44 4.82 -69.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091777968.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.730 kcal (2) G-P(sol) polarization free energy of solvation -74.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds