Wall clock time and date at job start Tue Mar 31 2020 23:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53775 * 111.86066 * 2 1 4 4 N 1.47213 * 106.37427 * 140.62138 * 3 2 1 5 5 C 1.36940 * 126.70376 * 148.71916 * 4 3 2 6 6 H 1.08000 * 119.99723 * 0.02562 * 5 4 3 7 7 C 1.38813 * 119.99924 * 180.02562 * 5 4 3 8 8 N 1.31612 * 120.00434 * 0.02562 * 7 5 4 9 9 Si 1.86808 * 119.99741 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47105 * 89.99719 * 9 7 5 11 11 H 1.48501 * 109.46796 * 210.00126 * 9 7 5 12 12 H 1.48504 * 109.46743 * 330.00032 * 9 7 5 13 13 C 1.46516 * 106.97036 * 329.55822 * 4 3 2 14 14 C 1.53776 * 106.73629 * 29.89353 * 13 4 3 15 15 H 1.08995 * 112.60776 * 220.37902 * 14 13 4 16 16 C 1.53784 * 109.34681 * 95.37136 * 14 13 4 17 17 N 1.47215 * 106.37655 * 228.53587 * 16 14 13 18 18 C 1.34780 * 126.69924 * 211.26983 * 17 16 14 19 19 O 1.21584 * 120.00025 * 183.60923 * 18 17 16 20 20 C 1.47578 * 119.99689 * 3.60444 * 18 17 16 21 21 C 1.41766 * 120.01002 * 146.31208 * 20 18 17 22 22 C 1.35621 * 119.53744 * 180.23977 * 21 20 18 23 23 C 1.41179 * 119.51044 * 359.81806 * 22 21 20 24 24 N 1.32416 * 132.11972 * 180.02562 * 23 22 21 25 25 C 1.33591 * 109.22453 * 179.97438 * 24 23 22 26 26 C 1.35002 * 108.66181 * 0.02562 * 25 24 23 27 27 N 1.37014 * 107.14056 * 0.02562 * 26 25 24 28 28 C 1.35910 * 132.41598 * 180.02562 * 27 26 25 29 29 C 1.47207 * 106.60124 * 31.52446 * 17 16 14 30 30 H 1.09001 * 109.46962 * 302.05728 * 1 2 3 31 31 H 1.08998 * 109.46924 * 62.05591 * 1 2 3 32 32 H 1.09001 * 109.46780 * 182.05518 * 1 2 3 33 33 H 1.08995 * 110.08030 * 259.85014 * 3 2 1 34 34 H 1.09003 * 110.07183 * 21.34433 * 3 2 1 35 35 H 0.96997 * 120.00071 * 180.02562 * 8 7 5 36 36 H 1.09002 * 108.72442 * 271.18003 * 13 4 3 37 37 H 1.08998 * 111.06863 * 149.89307 * 13 4 3 38 38 H 1.08998 * 110.07084 * 109.30177 * 16 14 13 39 39 H 1.08997 * 110.11996 * 347.78531 * 16 14 13 40 40 H 1.07993 * 120.22937 * 0.05814 * 21 20 18 41 41 H 1.08007 * 120.24425 * 179.83837 * 22 21 20 42 42 H 1.08005 * 125.66877 * 179.97438 * 25 24 23 43 43 H 1.07996 * 126.42998 * 179.97438 * 26 25 24 44 44 H 1.08006 * 119.75911 * 359.92423 * 28 27 26 45 45 H 1.09000 * 110.07239 * 87.69091 * 29 17 16 46 46 H 1.08999 * 110.07824 * 209.23282 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1026 1.4272 0.0000 4 7 3.2704 1.4058 0.8961 5 6 4.4008 2.1709 0.7858 6 1 4.4964 2.8794 -0.0237 7 6 5.4236 2.0359 1.7145 8 7 5.3073 1.1721 2.7008 9 14 6.9653 3.0801 1.5645 10 1 6.7818 4.3450 2.3203 11 1 8.1237 2.3351 2.1198 12 1 7.2157 3.3901 0.1339 13 6 3.0043 0.3935 1.9213 14 6 2.1092 -0.6731 1.2687 15 1 1.3241 -1.0271 1.9368 16 6 2.9851 -1.8268 0.7524 17 7 2.5535 -2.0889 -0.6304 18 6 2.5682 -3.2766 -1.2674 19 8 2.2435 -3.3432 -2.4372 20 6 2.9786 -4.4963 -0.5449 21 6 2.3784 -5.7418 -0.8583 22 6 2.7593 -6.8558 -0.1849 23 6 3.7507 -6.7587 0.8155 24 7 4.3013 -7.6630 1.6109 25 6 5.2046 -7.0677 2.3947 26 6 5.2347 -5.7514 2.0965 27 7 4.3187 -5.5422 1.0993 28 6 3.9365 -4.4257 0.4251 29 6 2.1085 -0.7994 -1.1837 30 1 -0.3633 0.5455 0.8710 31 1 -0.3633 0.4816 -0.9078 32 1 -0.3633 -1.0270 0.0369 33 1 2.4094 1.7073 -1.0077 34 1 1.3569 2.1294 0.3726 35 1 6.0219 1.0781 3.3499 36 1 2.4790 0.8659 2.7515 37 1 3.9306 -0.0601 2.2738 38 1 2.8341 -2.7147 1.3663 39 1 4.0355 -1.5360 0.7676 40 1 1.6211 -5.8026 -1.6257 41 1 2.3077 -7.8101 -0.4126 42 1 5.8096 -7.5580 3.1431 43 1 5.8624 -5.0035 2.5580 44 1 4.3930 -3.4753 0.6594 45 1 2.9541 -0.2678 -1.6201 46 1 1.3384 -0.9616 -1.9379 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092189162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:17:58 Heat of formation + Delta-G solvation = 101.229308 kcal Electronic energy + Delta-G solvation = -30133.370836 eV Core-core repulsion = 26218.566786 eV Total energy + Delta-G solvation = -3914.804050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.98928 -40.52074 -38.74507 -36.99657 -35.19376 -33.87029 -33.08640 -31.16370 -30.61661 -30.09337 -28.97860 -26.60932 -26.00255 -25.38899 -24.38490 -23.13789 -22.48164 -21.93156 -20.30761 -19.84455 -18.86179 -18.04116 -17.43705 -16.89593 -16.42849 -16.19098 -15.81013 -15.37221 -15.01895 -14.77940 -14.67678 -14.29565 -13.96938 -13.90675 -13.57727 -13.39097 -13.07530 -12.94188 -12.54588 -12.34053 -12.04340 -12.00183 -11.81935 -11.73073 -11.41834 -11.24217 -11.03817 -10.94269 -10.87950 -10.34677 -10.30291 -10.22959 -10.07327 -10.01426 -9.89903 -9.69496 -9.05207 -8.83774 -8.55835 -8.06452 -7.02902 -5.80368 -3.24526 0.37863 0.93336 2.28814 2.45632 2.86548 3.03178 3.30161 3.36525 3.37037 3.42011 4.01429 4.19784 4.35656 4.36781 4.51523 4.72598 4.82159 4.89186 5.06874 5.14557 5.19962 5.25143 5.32912 5.40956 5.47428 5.56212 5.63206 5.67560 5.70647 5.80146 5.86678 5.90117 5.99106 6.09650 6.16916 6.21719 6.22397 6.28136 6.32735 6.42336 6.59879 6.64322 6.75077 6.77841 7.25338 7.47511 7.57626 7.65119 7.65641 8.09111 8.21256 9.07146 9.66549 10.32526 11.21265 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.003850 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.652023 B = 7270.986430 C = 8963.497424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 C 0.145 3.855 4 N -0.595 5.595 5 C -0.219 4.219 6 H 0.079 0.921 7 C -0.010 4.010 8 N -0.924 5.924 9 Si 0.915 3.085 10 H -0.288 1.288 11 H -0.290 1.290 12 H -0.281 1.281 13 C 0.145 3.855 14 C -0.116 4.116 15 H 0.080 0.920 16 C 0.100 3.900 17 N -0.604 5.604 18 C 0.583 3.417 19 O -0.537 6.537 20 C -0.146 4.146 21 C -0.057 4.057 22 C -0.088 4.088 23 C 0.230 3.770 24 N -0.495 5.495 25 C 0.032 3.968 26 C -0.092 4.092 27 N -0.365 5.365 28 C 0.101 3.899 29 C 0.126 3.874 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.025 0.975 35 H 0.253 0.747 36 H 0.010 0.990 37 H 0.126 0.874 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.151 0.849 41 H 0.156 0.844 42 H 0.183 0.817 43 H 0.188 0.812 44 H 0.179 0.821 45 H 0.076 0.924 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.579 -11.547 -1.995 12.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.090 4.090 3 C 0.018 3.982 4 N -0.318 5.318 5 C -0.347 4.347 6 H 0.097 0.903 7 C -0.205 4.205 8 N -0.573 5.573 9 Si 0.745 3.255 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.207 1.207 13 C 0.019 3.981 14 C -0.136 4.136 15 H 0.099 0.901 16 C -0.022 4.022 17 N -0.336 5.336 18 C 0.371 3.629 19 O -0.415 6.415 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.108 4.108 23 C -0.014 4.014 24 N -0.215 5.215 25 C -0.118 4.118 26 C -0.222 4.222 27 N -0.037 5.037 28 C -0.024 4.024 29 C 0.004 3.996 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.042 0.958 35 H 0.064 0.936 36 H 0.028 0.972 37 H 0.143 0.857 38 H 0.086 0.914 39 H 0.105 0.895 40 H 0.169 0.831 41 H 0.174 0.826 42 H 0.200 0.800 43 H 0.205 0.795 44 H 0.196 0.804 45 H 0.094 0.906 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.631 -12.405 -2.482 13.848 hybrid contribution 1.104 1.500 0.184 1.871 sum -4.528 -10.905 -2.298 12.029 Atomic orbital electron populations 1.21672 0.93573 1.01215 1.01817 1.22248 0.95070 0.97398 0.94330 1.21386 0.90114 0.91879 0.94844 1.44344 1.15309 1.43070 1.29120 1.19111 0.92220 1.14137 1.09216 0.90294 1.24740 0.98791 0.99747 0.97207 1.69589 1.33133 1.38062 1.16476 0.86064 0.82394 0.79472 0.77550 1.21529 1.21628 1.20668 1.21839 0.98991 0.87636 0.89664 1.23091 0.97803 0.96211 0.96522 0.90143 1.22659 1.00181 0.98277 0.81084 1.48551 1.62600 1.07417 1.15002 1.17307 0.78408 0.81335 0.85858 1.90797 1.49871 1.85593 1.15271 1.19435 1.00763 0.95824 0.99171 1.20958 0.98998 0.89550 0.98627 1.20148 0.96021 1.00360 0.94319 1.21169 0.99308 0.80739 1.00209 1.70737 1.12293 1.29720 1.08758 1.22551 0.98424 0.90670 1.00179 1.22895 1.01114 1.00412 0.97739 1.42829 1.27135 1.08493 1.25265 1.22311 0.97003 0.90902 0.92178 1.22202 0.99389 0.82086 0.95932 0.92184 0.92599 0.93049 0.93678 0.95755 0.93589 0.97236 0.85683 0.91407 0.89546 0.83130 0.82616 0.79996 0.79489 0.80416 0.90603 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.45 37.16 0.31 -1.30 16 2 C -0.09 -1.38 1.09 -152.55 -0.17 -1.54 16 3 C 0.14 2.69 6.24 -3.25 -0.02 2.67 16 4 N -0.59 -13.60 3.37 -171.70 -0.58 -14.18 16 5 C -0.22 -5.58 10.33 -15.06 -0.16 -5.73 16 6 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 7 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 8 N -0.92 -24.38 10.06 55.49 0.56 -23.82 16 9 Si 0.91 20.72 29.55 -169.99 -5.02 15.70 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 C 0.14 3.07 5.46 -3.63 -0.02 3.05 16 14 C -0.12 -1.89 3.69 -88.83 -0.33 -2.22 16 15 H 0.08 1.20 7.88 -51.93 -0.41 0.79 16 16 C 0.10 1.51 4.65 -3.24 -0.02 1.49 16 17 N -0.60 -9.25 3.32 -172.59 -0.57 -9.82 16 18 C 0.58 9.03 7.57 -12.45 -0.09 8.93 16 19 O -0.54 -9.73 17.07 5.29 0.09 -9.64 16 20 C -0.15 -1.93 5.56 -105.37 -0.59 -2.51 16 21 C -0.06 -0.66 9.62 -39.17 -0.38 -1.04 16 22 C -0.09 -0.99 10.09 -39.40 -0.40 -1.39 16 23 C 0.23 3.07 7.81 -155.93 -1.22 1.85 16 24 N -0.50 -6.88 11.31 -12.72 -0.14 -7.02 16 25 C 0.03 0.36 11.82 -17.94 -0.21 0.15 16 26 C -0.09 -1.03 11.75 -16.39 -0.19 -1.22 16 27 N -0.37 -4.66 2.93 -62.31 -0.18 -4.85 16 28 C 0.10 1.27 8.73 -16.37 -0.14 1.13 16 29 C 0.13 1.98 6.14 -3.08 -0.02 1.96 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.04 0.82 7.56 -51.93 -0.39 0.43 16 34 H 0.02 0.46 7.87 -51.93 -0.41 0.05 16 35 H 0.25 6.54 8.31 -40.82 -0.34 6.21 16 36 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.13 2.95 4.87 -51.93 -0.25 2.69 16 38 H 0.07 0.89 6.03 -51.93 -0.31 0.58 16 39 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 40 H 0.15 1.52 8.01 -52.49 -0.42 1.10 16 41 H 0.16 1.34 8.06 -52.48 -0.42 0.92 16 42 H 0.18 1.44 8.06 -52.48 -0.42 1.02 16 43 H 0.19 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.18 2.14 5.37 -52.48 -0.28 1.86 16 45 H 0.08 1.31 7.47 -51.93 -0.39 0.92 16 46 H 0.07 1.13 7.65 -51.93 -0.40 0.73 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -30.58 365.94 -10.19 -40.77 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -6.13 Total: 3.41 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: -3.73 Total: 3.93 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.92 Total: -59.69 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.58 -10.19 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092189162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.999 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds