Wall clock time and date at job start Tue Mar 31 2020 23:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53781 * 112.60171 * 2 1 4 4 N 1.47217 * 106.37367 * 103.51183 * 3 2 1 5 5 C 1.36936 * 126.70282 * 211.29372 * 4 3 2 6 6 H 1.07991 * 120.00174 * 359.95742 * 5 4 3 7 7 C 1.38815 * 119.99598 * 179.97438 * 5 4 3 8 8 N 1.31621 * 120.00356 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99644 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47339 * 90.00584 * 9 7 5 11 11 H 1.48501 * 109.47405 * 210.00388 * 9 7 5 12 12 H 1.48495 * 109.47471 * 330.00435 * 9 7 5 13 13 C 1.47221 * 106.59220 * 31.27553 * 4 3 2 14 14 C 1.53780 * 106.37597 * 328.72485 * 13 4 3 15 15 H 1.09001 * 111.86039 * 256.91720 * 14 13 4 16 16 C 1.54110 * 109.54636 * 131.54028 * 14 13 4 17 17 N 1.47216 * 106.20540 * 266.30437 * 16 14 13 18 18 C 1.34777 * 126.69721 * 148.63681 * 17 16 14 19 19 O 1.21669 * 119.99961 * 185.14415 * 18 17 16 20 20 C 1.46932 * 120.00226 * 5.15685 * 18 17 16 21 21 C 1.36468 * 126.72916 * 24.65345 * 20 18 17 22 22 N 1.35353 * 109.77765 * 180.02562 * 21 20 18 23 23 H 0.97002 * 124.82643 * 180.02562 * 22 21 20 24 24 C 1.37862 * 110.35051 * 359.97438 * 22 21 20 25 25 C 1.39223 * 133.47733 * 180.02562 * 24 22 21 26 26 C 1.38333 * 118.29731 * 179.97438 * 25 24 22 27 27 C 1.38603 * 119.64635 * 0.02562 * 26 25 24 28 28 N 1.31624 * 121.18912 * 0.25692 * 27 26 25 29 29 C 1.32696 * 121.42597 * 359.47586 * 28 27 26 30 30 C 1.47214 * 106.59745 * 328.37740 * 17 16 14 31 31 H 1.09003 * 109.46598 * 182.59840 * 1 2 3 32 32 H 1.08999 * 109.47013 * 302.59309 * 1 2 3 33 33 H 1.08997 * 109.47465 * 62.60338 * 1 2 3 34 34 H 1.08998 * 110.07759 * 222.74025 * 3 2 1 35 35 H 1.09006 * 110.07422 * 344.28789 * 3 2 1 36 36 H 0.96993 * 119.99929 * 179.97438 * 8 7 5 37 37 H 1.09000 * 110.07490 * 209.49571 * 13 4 3 38 38 H 1.09000 * 110.12271 * 87.98053 * 13 4 3 39 39 H 1.08997 * 110.23107 * 147.09394 * 16 14 13 40 40 H 1.09001 * 110.08117 * 25.43808 * 16 14 13 41 41 H 1.08004 * 125.10872 * 359.96792 * 21 20 18 42 42 H 1.08004 * 120.85507 * 359.97438 * 25 24 22 43 43 H 1.08005 * 120.17890 * 180.02562 * 26 25 24 44 44 H 1.08000 * 119.40195 * 179.97438 * 27 26 25 45 45 H 1.08997 * 110.07241 * 150.76808 * 30 17 16 46 46 H 1.09001 * 110.07201 * 272.30811 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1210 1.4197 0.0000 4 7 2.5852 1.6760 1.3734 5 6 2.6202 2.8863 2.0130 6 1 2.2848 3.7768 1.5024 7 6 3.0874 2.9686 3.3176 8 7 3.4970 1.8834 3.9396 9 14 3.1358 4.6197 4.1898 10 1 1.8505 4.8426 4.8994 11 1 4.2508 4.6289 5.1707 12 1 3.3447 5.7002 3.1929 13 6 3.0039 0.3768 1.9249 14 6 2.1092 -0.6841 1.2626 15 1 1.3243 -1.0302 1.9351 16 6 2.9828 -1.8385 0.7345 17 7 3.2702 -1.5248 -0.6749 18 6 4.3826 -1.8514 -1.3621 19 8 4.5348 -1.4490 -2.5002 20 6 5.4115 -2.6938 -0.7371 21 6 5.2291 -3.5857 0.2797 22 7 6.4079 -4.1746 0.5892 23 1 6.5278 -4.8443 1.2806 24 6 7.4136 -3.6882 -0.2186 25 6 8.7773 -3.9515 -0.3142 26 6 9.5127 -3.2653 -1.2638 27 6 8.8820 -2.3442 -2.0853 28 7 7.5924 -2.1045 -1.9765 29 6 6.8432 -2.7407 -1.0849 30 6 2.1025 -0.7901 -1.1887 31 1 -0.3632 -1.0267 0.0466 32 1 -0.3633 0.5536 0.8658 33 1 -0.3634 0.4729 -0.9124 34 1 2.9590 1.4762 -0.6948 35 1 1.3550 2.1439 -0.2773 36 1 3.8238 1.9410 4.8510 37 1 2.8607 0.3654 3.0054 38 1 4.0500 0.1870 1.6846 39 1 2.4427 -2.7826 0.8049 40 1 3.9116 -1.8950 1.3021 41 1 4.2862 -3.7900 0.7650 42 1 9.2490 -4.6732 0.3364 43 1 10.5728 -3.4462 -1.3645 44 1 9.4601 -1.8104 -2.8251 45 1 2.4094 -0.1059 -1.9797 46 1 1.3571 -1.4897 -1.5668 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092201074.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:30 Heat of formation + Delta-G solvation = 78.227586 kcal Electronic energy + Delta-G solvation = -29992.122231 eV Core-core repulsion = 26076.320751 eV Total energy + Delta-G solvation = -3915.801480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80722 -40.04909 -38.13896 -37.72933 -34.85392 -33.05590 -32.65498 -30.88837 -30.33927 -29.94346 -29.59736 -26.44216 -25.79710 -25.11615 -23.89425 -23.11479 -22.62822 -21.64699 -20.21012 -19.13312 -18.68612 -17.87025 -17.02188 -16.80701 -16.39103 -15.98994 -15.58990 -15.09953 -14.94566 -14.79586 -14.47000 -13.98965 -13.69497 -13.41669 -13.36802 -13.25052 -12.87594 -12.69751 -12.60165 -12.48263 -12.35482 -11.97255 -11.70786 -11.56553 -11.31048 -10.95077 -10.88510 -10.73020 -10.39654 -10.12046 -10.05604 -9.94296 -9.74265 -9.61738 -9.44925 -9.25541 -8.69964 -8.62275 -8.35596 -8.17462 -6.85135 -5.63602 -3.07440 0.77726 1.21419 1.98123 2.69496 3.20457 3.40012 3.45450 3.47416 3.52372 3.97278 4.13735 4.46007 4.48913 4.63272 4.78469 4.83126 4.93137 4.98641 5.09070 5.29091 5.35808 5.36759 5.47532 5.52606 5.54297 5.64180 5.71265 5.76617 5.95266 5.98962 6.04937 6.06861 6.10249 6.22088 6.22513 6.33819 6.43539 6.51941 6.61654 6.70528 6.72680 6.87774 7.00937 7.07863 7.47783 7.62121 7.82274 7.91494 8.09075 8.39959 8.60044 9.22204 9.83139 10.51485 11.37761 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011673 B = 0.003545 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.070974 B = 7897.333787 C = 9062.414659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.087 4.087 3 C 0.144 3.856 4 N -0.595 5.595 5 C -0.214 4.214 6 H 0.078 0.922 7 C -0.013 4.013 8 N -0.923 5.923 9 Si 0.915 3.085 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.144 3.856 14 C -0.115 4.115 15 H 0.087 0.913 16 C 0.104 3.896 17 N -0.610 5.610 18 C 0.606 3.394 19 O -0.530 6.530 20 C -0.202 4.202 21 C 0.120 3.880 22 N -0.574 5.574 23 H 0.422 0.578 24 C 0.034 3.966 25 C -0.079 4.079 26 C -0.161 4.161 27 C 0.096 3.904 28 N -0.434 5.434 29 C 0.140 3.860 30 C 0.122 3.878 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.021 0.979 35 H 0.042 0.958 36 H 0.251 0.749 37 H 0.122 0.878 38 H 0.006 0.994 39 H 0.059 0.941 40 H 0.079 0.921 41 H 0.190 0.810 42 H 0.133 0.867 43 H 0.140 0.860 44 H 0.159 0.841 45 H 0.079 0.921 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -17.425 -5.015 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.089 4.089 3 C 0.017 3.983 4 N -0.318 5.318 5 C -0.343 4.343 6 H 0.096 0.904 7 C -0.208 4.208 8 N -0.573 5.573 9 Si 0.746 3.254 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.207 1.207 13 C 0.018 3.982 14 C -0.136 4.136 15 H 0.105 0.895 16 C -0.020 4.020 17 N -0.343 5.343 18 C 0.396 3.604 19 O -0.407 6.407 20 C -0.214 4.214 21 C -0.014 4.014 22 N -0.176 5.176 23 H 0.260 0.740 24 C -0.073 4.073 25 C -0.108 4.108 26 C -0.182 4.182 27 C -0.070 4.070 28 N -0.141 5.141 29 C 0.006 3.994 30 C 0.000 4.000 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.140 0.860 38 H 0.024 0.976 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.207 0.793 42 H 0.151 0.849 43 H 0.157 0.843 44 H 0.176 0.824 45 H 0.097 0.903 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.205 -16.541 -5.934 18.069 hybrid contribution 0.619 -0.147 1.471 1.603 sum 4.824 -16.687 -4.463 17.935 Atomic orbital electron populations 1.21608 0.93249 1.00983 1.02018 1.22161 0.95434 0.97353 0.93989 1.21435 0.95815 0.92180 0.88828 1.44493 1.73946 1.04347 1.09024 1.19119 1.35475 0.84677 0.94996 0.90383 1.24743 1.01456 0.97548 0.97039 1.69593 1.49562 1.25706 1.12426 0.86051 0.77186 0.82838 0.79341 1.21623 1.21706 1.20742 1.21967 0.92351 0.81745 1.02089 1.23154 0.98350 0.95805 0.96273 0.89495 1.22396 0.99916 0.97779 0.81871 1.48247 1.17345 1.56432 1.12309 1.16658 0.79251 0.79603 0.84895 1.90803 1.77091 1.54633 1.18135 1.19863 0.92206 1.06016 1.03273 1.22455 0.90075 0.93693 0.95183 1.41345 1.06229 1.37461 1.32583 0.73978 1.19087 0.91293 1.00369 0.96589 1.20480 0.89702 1.00879 0.99711 1.21879 1.01013 0.98351 0.96937 1.22748 0.89956 0.96010 0.98309 1.67108 1.05960 1.22866 1.18156 1.19458 0.92667 0.94022 0.93298 1.22041 0.86308 0.94773 0.96919 0.93114 0.91711 0.92908 0.96180 0.93945 0.93788 0.86038 0.97576 0.92289 0.90297 0.79349 0.84889 0.84253 0.82389 0.90280 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 8.49 37.16 0.32 -1.42 16 2 C -0.09 -1.50 1.09 -152.72 -0.17 -1.67 16 3 C 0.14 3.11 6.38 -3.24 -0.02 3.09 16 4 N -0.59 -15.27 3.39 -171.12 -0.58 -15.85 16 5 C -0.21 -5.99 10.34 -15.06 -0.16 -6.15 16 6 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 7 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 8 N -0.92 -26.45 10.08 55.49 0.56 -25.89 16 9 Si 0.92 22.11 29.55 -169.99 -5.02 17.09 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.14 3.39 5.71 -3.24 -0.02 3.37 16 14 C -0.12 -2.03 3.68 -88.66 -0.33 -2.35 16 15 H 0.09 1.42 7.88 -51.93 -0.41 1.01 16 16 C 0.10 1.51 4.68 -3.07 -0.01 1.50 16 17 N -0.61 -10.31 3.32 -172.82 -0.57 -10.89 16 18 C 0.61 11.50 7.81 -12.74 -0.10 11.40 16 19 O -0.53 -12.01 17.25 5.22 0.09 -11.92 16 20 C -0.20 -3.27 5.94 -103.28 -0.61 -3.89 16 21 C 0.12 1.33 9.95 -16.64 -0.17 1.17 16 22 N -0.57 -5.35 5.98 -10.46 -0.06 -5.41 16 23 H 0.42 2.16 8.96 -40.82 -0.37 1.79 16 24 C 0.03 0.42 7.27 -83.94 -0.61 -0.19 16 25 C -0.08 -0.77 10.19 -39.18 -0.40 -1.17 16 26 C -0.16 -1.55 10.09 -39.41 -0.40 -1.95 16 27 C 0.10 1.21 11.16 -17.51 -0.20 1.02 16 28 N -0.43 -7.53 10.41 -9.70 -0.10 -7.64 16 29 C 0.14 2.32 7.44 -82.91 -0.62 1.70 16 30 C 0.12 2.01 5.98 -3.25 -0.02 1.99 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.02 0.48 7.39 -51.93 -0.38 0.09 16 35 H 0.04 0.88 7.85 -51.93 -0.41 0.48 16 36 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 37 H 0.12 3.20 5.44 -51.93 -0.28 2.91 16 38 H 0.01 0.16 7.42 -51.93 -0.39 -0.22 16 39 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 40 H 0.08 1.16 5.78 -51.93 -0.30 0.86 16 41 H 0.19 1.47 6.04 -52.48 -0.32 1.16 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 44 H 0.16 1.52 8.06 -52.49 -0.42 1.10 16 45 H 0.08 1.43 7.24 -51.93 -0.38 1.05 16 46 H 0.06 0.86 7.87 -51.93 -0.41 0.45 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -37.46 367.37 -9.88 -47.34 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -6.12 Total: 1.65 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: -3.60 Total: 5.99 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -0.76 Total: -65.68 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.46 -9.88 -47.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092201074.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.566 kcal (2) G-P(sol) polarization free energy of solvation -37.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds