Wall clock time and date at job start Tue Mar 31 2020 23:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54033 * 112.12271 * 2 1 4 4 N 1.48335 * 104.53075 * 97.20191 * 3 2 1 5 5 C 1.36932 * 128.19945 * 221.76697 * 4 3 2 6 6 H 1.07999 * 120.00069 * 5.64479 * 5 4 3 7 7 C 1.38819 * 120.00165 * 185.63920 * 5 4 3 8 8 N 1.31616 * 119.99468 * 34.51796 * 7 5 4 9 9 Si 1.86796 * 120.00048 * 214.52286 * 7 5 4 10 10 H 1.48500 * 109.47173 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47320 * 60.00024 * 9 7 5 12 12 H 1.48499 * 109.47002 * 299.99851 * 9 7 5 13 13 C 1.48338 * 103.60050 * 41.51385 * 4 3 2 14 14 C 1.54458 * 104.32267 * 318.44956 * 13 4 3 15 15 H 1.09000 * 112.29996 * 263.01574 * 14 13 4 16 16 C 1.53740 * 109.01181 * 137.92635 * 14 13 4 17 17 N 1.48246 * 105.90571 * 229.74342 * 16 14 13 18 18 C 1.34766 * 126.42024 * 211.09715 * 17 16 14 19 19 O 1.21672 * 120.00477 * 173.87466 * 18 17 16 20 20 C 1.46936 * 119.99991 * 353.86958 * 18 17 16 21 21 C 1.36362 * 126.82467 * 335.62779 * 20 18 17 22 22 N 1.35567 * 109.74576 * 179.97438 * 21 20 18 23 23 H 0.97007 * 124.71998 * 180.02562 * 22 21 20 24 24 C 1.37695 * 110.56203 * 0.02562 * 22 21 20 25 25 N 1.32679 * 132.94188 * 180.02562 * 24 22 21 26 26 C 1.31603 * 121.68772 * 179.97438 * 25 24 22 27 27 C 1.38584 * 121.54243 * 359.97438 * 26 25 24 28 28 C 1.38338 * 119.32973 * 0.02562 * 27 26 25 29 29 C 1.39359 * 118.05242 * 359.69781 * 28 27 26 30 30 C 1.47199 * 106.87507 * 30.83444 * 17 16 14 31 31 H 1.08999 * 109.46948 * 302.41661 * 1 2 3 32 32 H 1.09000 * 109.47512 * 62.41318 * 1 2 3 33 33 H 1.08998 * 109.47161 * 182.41459 * 1 2 3 34 34 H 1.08991 * 110.39679 * 338.40877 * 3 2 1 35 35 H 1.09003 * 110.33138 * 215.96347 * 3 2 1 36 36 H 0.97001 * 120.00773 * 355.40676 * 8 7 5 37 37 H 1.08994 * 110.46944 * 77.16199 * 13 4 3 38 38 H 1.09004 * 110.46275 * 199.74339 * 13 4 3 39 39 H 1.08994 * 110.06528 * 348.70289 * 16 14 13 40 40 H 1.09007 * 110.06024 * 110.21407 * 16 14 13 41 41 H 1.08002 * 125.12400 * 0.02562 * 21 20 18 42 42 H 1.08000 * 119.22867 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.33775 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.97395 * 180.02562 * 28 27 26 45 45 H 1.08997 * 110.06283 * 209.64633 * 30 17 16 46 46 H 1.09000 * 110.06294 * 88.13091 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4170 1.7039 1.4246 5 6 2.2026 2.8591 2.1279 6 1 1.6747 3.6813 1.6678 7 6 2.6637 2.9733 3.4323 8 7 3.7919 2.3941 3.7844 9 14 1.6829 3.9489 4.6875 10 1 2.3841 3.9177 5.9962 11 1 0.3327 3.3488 4.8356 12 1 1.5520 5.3552 4.2289 13 6 3.0053 0.4311 1.9085 14 6 2.1221 -0.6645 1.2719 15 1 1.3493 -1.0205 1.9531 16 6 3.0231 -1.8030 0.7662 17 7 2.6007 -2.0656 -0.6303 18 6 2.6416 -3.2516 -1.2690 19 8 2.1616 -3.3604 -2.3817 20 6 3.2660 -4.4136 -0.6216 21 6 4.2190 -4.3917 0.3534 22 7 4.5484 -5.6602 0.7005 23 1 5.2049 -5.8958 1.3746 24 6 3.8214 -6.5676 -0.0372 25 7 3.7883 -7.8938 -0.0603 26 6 2.9891 -8.5512 -0.8733 27 6 2.1403 -7.8902 -1.7470 28 6 2.1317 -6.5070 -1.7670 29 6 2.9826 -5.8336 -0.8927 30 6 2.1238 -0.7862 -1.1802 31 1 -0.3633 0.5509 0.8675 32 1 -0.3634 0.4759 -0.9108 33 1 -0.3633 -1.0267 0.0433 34 1 1.3732 2.1365 -0.3759 35 1 3.0191 1.4662 -0.6003 36 1 4.2670 1.8327 3.1520 37 1 4.0365 0.3344 1.5689 38 1 2.9547 0.3771 2.9960 39 1 4.0674 -1.4918 0.7891 40 1 2.8836 -2.6917 1.3819 41 1 4.6463 -3.4985 0.7848 42 1 2.9948 -9.6311 -0.8593 43 1 1.4921 -8.4493 -2.4056 44 1 1.4806 -5.9649 -2.4368 45 1 1.3568 -0.9658 -1.9336 46 1 2.9556 -0.2337 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092283684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:28 Heat of formation + Delta-G solvation = 79.320247 kcal Electronic energy + Delta-G solvation = -29583.182822 eV Core-core repulsion = 25667.428724 eV Total energy + Delta-G solvation = -3915.754098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95607 -40.22515 -38.41120 -37.94550 -35.17559 -33.24522 -32.91414 -31.08788 -30.55771 -29.99878 -29.54012 -26.67054 -25.72538 -25.28146 -24.02202 -23.24490 -22.77260 -21.72019 -20.57732 -19.22309 -18.77569 -18.19891 -17.42549 -17.15915 -16.37182 -16.27197 -15.67323 -15.31736 -15.14334 -14.85060 -14.58174 -14.13312 -14.00454 -13.67432 -13.51406 -13.42829 -13.17718 -12.88032 -12.77238 -12.60763 -12.41157 -12.25795 -11.99201 -11.73361 -11.37473 -10.95450 -10.77004 -10.64462 -10.46253 -10.35029 -10.21734 -10.15769 -9.99913 -9.96862 -9.69973 -9.53876 -8.82838 -8.62454 -8.40523 -8.33390 -7.12749 -6.28947 -3.10700 0.64510 1.05438 1.81604 2.37732 2.98042 3.27063 3.44994 3.50244 3.67173 3.68359 4.17696 4.34126 4.39001 4.48910 4.65718 4.72135 4.77773 4.90865 4.98435 5.07344 5.18849 5.23961 5.28964 5.31879 5.45878 5.47697 5.55787 5.57677 5.80727 5.86467 5.90448 5.97488 6.02548 6.07481 6.08632 6.15633 6.19434 6.33405 6.43467 6.54187 6.57384 6.57479 6.72633 6.82691 6.87060 6.89619 7.60428 7.62015 7.69402 8.26285 8.38270 8.87529 9.73707 10.35575 11.13027 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002696 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.844365 B =10382.907465 C =11184.318007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.085 4.085 3 C 0.140 3.860 4 N -0.598 5.598 5 C -0.339 4.339 6 H 0.072 0.928 7 C -0.025 4.025 8 N -0.913 5.913 9 Si 1.065 2.935 10 H -0.286 1.286 11 H -0.294 1.294 12 H -0.293 1.293 13 C 0.137 3.863 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.100 3.900 17 N -0.612 5.612 18 C 0.605 3.395 19 O -0.547 6.547 20 C -0.211 4.211 21 C 0.117 3.883 22 N -0.566 5.566 23 H 0.425 0.575 24 C 0.277 3.723 25 N -0.497 5.497 26 C 0.135 3.865 27 C -0.198 4.198 28 C -0.019 4.019 29 C -0.109 4.109 30 C 0.120 3.880 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.268 0.732 37 H 0.025 0.975 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.191 0.809 42 H 0.162 0.838 43 H 0.139 0.861 44 H 0.142 0.858 45 H 0.078 0.922 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.883 -18.325 -7.617 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.087 4.087 3 C 0.013 3.987 4 N -0.322 5.322 5 C -0.466 4.466 6 H 0.090 0.910 7 C -0.227 4.227 8 N -0.554 5.554 9 Si 0.895 3.105 10 H -0.212 1.212 11 H -0.222 1.222 12 H -0.220 1.220 13 C 0.011 3.989 14 C -0.131 4.131 15 H 0.105 0.895 16 C -0.022 4.022 17 N -0.345 5.345 18 C 0.395 3.605 19 O -0.426 6.426 20 C -0.222 4.222 21 C -0.015 4.015 22 N -0.171 5.171 23 H 0.264 0.736 24 C 0.045 3.955 25 N -0.209 5.209 26 C -0.031 4.031 27 C -0.219 4.219 28 C -0.046 4.046 29 C -0.116 4.116 30 C -0.002 4.002 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.042 0.958 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.208 0.792 42 H 0.179 0.821 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.096 0.904 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.488 -18.151 -5.924 19.100 hybrid contribution -0.094 -0.164 -1.761 1.772 sum -0.582 -18.316 -7.685 19.871 Atomic orbital electron populations 1.21584 0.93183 1.00919 1.02063 1.22271 0.95999 0.97192 0.93253 1.21744 0.96808 0.92167 0.87952 1.45204 1.72402 1.09559 1.05013 1.19695 1.36770 0.93460 0.96677 0.90984 1.25679 0.96511 1.03432 0.97067 1.70868 1.10031 1.32900 1.41627 0.83468 0.75617 0.75118 0.76283 1.21179 1.22164 1.22006 1.21875 0.93099 0.84754 0.99210 1.23097 0.98121 0.94923 0.96911 0.89507 1.22665 0.98932 0.98879 0.81758 1.48693 1.63472 1.08043 1.14247 1.16773 0.78728 0.80433 0.84526 1.90765 1.48181 1.83910 1.19743 1.19913 1.05666 0.92132 1.04477 1.22496 0.96640 0.87017 0.95333 1.41344 1.36559 1.04011 1.35172 0.73640 1.18347 0.94389 0.88552 0.94168 1.66486 1.24123 1.05777 1.24554 1.22455 0.90581 0.99642 0.90400 1.21954 1.02758 0.94576 1.02600 1.21110 0.95018 0.93631 0.94823 1.19416 1.00092 0.92311 0.99763 1.22156 0.98954 0.82739 0.96387 0.91595 0.92877 0.93380 0.92855 0.95692 0.92085 0.95783 0.90870 0.90830 0.90600 0.79203 0.82078 0.84272 0.84024 0.90395 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.82 8.59 37.16 0.32 -1.50 16 2 C -0.08 -1.36 1.07 -152.40 -0.16 -1.52 16 3 C 0.14 2.70 6.36 -2.49 -0.02 2.68 16 4 N -0.60 -14.07 3.35 -168.73 -0.56 -14.64 16 5 C -0.34 -9.12 10.17 -15.06 -0.15 -9.27 16 6 H 0.07 1.95 8.02 -52.49 -0.42 1.53 16 7 C -0.03 -0.70 5.02 -17.43 -0.09 -0.78 16 8 N -0.91 -26.25 12.75 55.49 0.71 -25.54 16 9 Si 1.07 24.52 30.03 -169.99 -5.11 19.41 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.14 2.83 4.75 -2.26 -0.01 2.82 16 14 C -0.11 -1.78 3.71 -88.29 -0.33 -2.11 16 15 H 0.09 1.43 7.93 -51.93 -0.41 1.02 16 16 C 0.10 1.31 4.90 -2.70 -0.01 1.30 16 17 N -0.61 -8.81 3.34 -172.24 -0.58 -9.39 16 18 C 0.61 9.33 7.81 -12.74 -0.10 9.23 16 19 O -0.55 -10.02 17.07 5.21 0.09 -9.93 16 20 C -0.21 -2.78 5.94 -103.36 -0.61 -3.39 16 21 C 0.12 1.16 9.97 -16.58 -0.17 0.99 16 22 N -0.57 -5.28 5.97 -11.97 -0.07 -5.35 16 23 H 0.43 2.66 8.96 -40.82 -0.37 2.30 16 24 C 0.28 3.34 8.41 -155.52 -1.31 2.03 16 25 N -0.50 -5.77 10.39 -12.29 -0.13 -5.90 16 26 C 0.13 1.24 11.14 -17.52 -0.20 1.05 16 27 C -0.20 -1.79 10.10 -39.42 -0.40 -2.19 16 28 C -0.02 -0.23 10.15 -39.13 -0.40 -0.63 16 29 C -0.11 -1.44 6.31 -104.93 -0.66 -2.10 16 30 C 0.12 1.79 6.27 -3.27 -0.02 1.77 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.05 1.02 7.90 -51.93 -0.41 0.61 16 35 H 0.03 0.48 7.16 -51.93 -0.37 0.11 16 36 H 0.27 7.58 6.27 -40.82 -0.26 7.33 16 37 H 0.02 0.50 7.10 -51.93 -0.37 0.13 16 38 H 0.07 1.70 6.62 -51.93 -0.34 1.36 16 39 H 0.07 0.89 6.68 -51.93 -0.35 0.55 16 40 H 0.08 0.85 6.50 -51.92 -0.34 0.51 16 41 H 0.19 1.40 6.04 -52.49 -0.32 1.08 16 42 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 43 H 0.14 0.84 8.06 -52.48 -0.42 0.41 16 44 H 0.14 1.68 7.94 -52.49 -0.42 1.26 16 45 H 0.08 1.18 7.58 -51.93 -0.39 0.79 16 46 H 0.07 1.03 7.11 -51.93 -0.37 0.66 16 LS Contribution 367.25 15.07 5.53 5.53 Total: -1.00 -34.11 367.25 -10.46 -44.58 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -6.04 Total: 2.84 kcal Atomic # 6 Polarization: 2.70 SS G_CDS: -4.31 Total: -1.62 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.63 Total: -60.82 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 24.52 SS G_CDS: -5.11 Total: 19.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.11 -10.46 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092283684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.896 kcal (2) G-P(sol) polarization free energy of solvation -34.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds