Wall clock time and date at job start Tue Mar 31 2020 23:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.54033 * 112.12271 * 2 1 4 4 N 1.48335 * 104.53075 * 97.20191 * 3 2 1 5 5 C 1.36932 * 128.19945 * 221.76697 * 4 3 2 6 6 H 1.07999 * 120.00069 * 5.64479 * 5 4 3 7 7 C 1.38819 * 120.00165 * 185.63920 * 5 4 3 8 8 N 1.31616 * 119.99468 * 34.51796 * 7 5 4 9 9 Si 1.86796 * 120.00048 * 214.52286 * 7 5 4 10 10 H 1.48500 * 109.47173 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47320 * 60.00024 * 9 7 5 12 12 H 1.48499 * 109.47002 * 299.99851 * 9 7 5 13 13 C 1.48338 * 103.60050 * 41.51385 * 4 3 2 14 14 C 1.54458 * 104.32267 * 318.44956 * 13 4 3 15 15 H 1.09000 * 112.29996 * 263.01574 * 14 13 4 16 16 C 1.53740 * 109.01181 * 137.92635 * 14 13 4 17 17 N 1.48246 * 105.90571 * 229.74342 * 16 14 13 18 18 C 1.34766 * 126.42024 * 211.09715 * 17 16 14 19 19 O 1.21672 * 120.00477 * 173.87466 * 18 17 16 20 20 C 1.46936 * 119.99991 * 353.86958 * 18 17 16 21 21 C 1.36362 * 126.82467 * 335.62779 * 20 18 17 22 22 N 1.35567 * 109.74576 * 179.97438 * 21 20 18 23 23 H 0.97007 * 124.71998 * 180.02562 * 22 21 20 24 24 C 1.37695 * 110.56203 * 0.02562 * 22 21 20 25 25 N 1.32679 * 132.94188 * 180.02562 * 24 22 21 26 26 C 1.31603 * 121.68772 * 179.97438 * 25 24 22 27 27 C 1.38584 * 121.54243 * 359.97438 * 26 25 24 28 28 C 1.38338 * 119.32973 * 0.02562 * 27 26 25 29 29 C 1.39359 * 118.05242 * 359.69781 * 28 27 26 30 30 C 1.47199 * 106.87507 * 30.83444 * 17 16 14 31 31 H 1.08999 * 109.46948 * 302.41661 * 1 2 3 32 32 H 1.09000 * 109.47512 * 62.41318 * 1 2 3 33 33 H 1.08998 * 109.47161 * 182.41459 * 1 2 3 34 34 H 1.08991 * 110.39679 * 338.40877 * 3 2 1 35 35 H 1.09003 * 110.33138 * 215.96347 * 3 2 1 36 36 H 0.97001 * 120.00773 * 355.40676 * 8 7 5 37 37 H 1.08994 * 110.46944 * 77.16199 * 13 4 3 38 38 H 1.09004 * 110.46275 * 199.74339 * 13 4 3 39 39 H 1.08994 * 110.06528 * 348.70289 * 16 14 13 40 40 H 1.09007 * 110.06024 * 110.21407 * 16 14 13 41 41 H 1.08002 * 125.12400 * 0.02562 * 21 20 18 42 42 H 1.08000 * 119.22867 * 179.97438 * 26 25 24 43 43 H 1.08004 * 120.33775 * 180.02562 * 27 26 25 44 44 H 1.07999 * 120.97395 * 180.02562 * 28 27 26 45 45 H 1.08997 * 110.06283 * 209.64633 * 30 17 16 46 46 H 1.09000 * 110.06294 * 88.13091 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1101 1.4269 0.0000 4 7 2.4170 1.7039 1.4246 5 6 2.2026 2.8591 2.1279 6 1 1.6747 3.6813 1.6678 7 6 2.6637 2.9733 3.4323 8 7 3.7919 2.3941 3.7844 9 14 1.6829 3.9489 4.6875 10 1 2.3841 3.9177 5.9962 11 1 0.3327 3.3488 4.8356 12 1 1.5520 5.3552 4.2289 13 6 3.0053 0.4311 1.9085 14 6 2.1221 -0.6645 1.2719 15 1 1.3493 -1.0205 1.9531 16 6 3.0231 -1.8030 0.7662 17 7 2.6007 -2.0656 -0.6303 18 6 2.6416 -3.2516 -1.2690 19 8 2.1616 -3.3604 -2.3817 20 6 3.2660 -4.4136 -0.6216 21 6 4.2190 -4.3917 0.3534 22 7 4.5484 -5.6602 0.7005 23 1 5.2049 -5.8958 1.3746 24 6 3.8214 -6.5676 -0.0372 25 7 3.7883 -7.8938 -0.0603 26 6 2.9891 -8.5512 -0.8733 27 6 2.1403 -7.8902 -1.7470 28 6 2.1317 -6.5070 -1.7670 29 6 2.9826 -5.8336 -0.8927 30 6 2.1238 -0.7862 -1.1802 31 1 -0.3633 0.5509 0.8675 32 1 -0.3634 0.4759 -0.9108 33 1 -0.3633 -1.0267 0.0433 34 1 1.3732 2.1365 -0.3759 35 1 3.0191 1.4662 -0.6003 36 1 4.2670 1.8327 3.1520 37 1 4.0365 0.3344 1.5689 38 1 2.9547 0.3771 2.9960 39 1 4.0674 -1.4918 0.7891 40 1 2.8836 -2.6917 1.3819 41 1 4.6463 -3.4985 0.7848 42 1 2.9948 -9.6311 -0.8593 43 1 1.4921 -8.4493 -2.4056 44 1 1.4806 -5.9649 -2.4368 45 1 1.3568 -0.9658 -1.9336 46 1 2.9556 -0.2337 -1.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092283684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:27 Heat of formation + Delta-G solvation = 58.138357 kcal Electronic energy + Delta-G solvation = -29584.101338 eV Core-core repulsion = 25667.428724 eV Total energy + Delta-G solvation = -3916.672614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.78528 -41.49510 -39.60739 -38.83278 -36.72269 -34.63230 -33.94900 -32.60649 -31.65819 -31.23161 -30.48141 -27.96065 -27.31101 -26.76111 -24.85061 -24.59412 -23.55696 -22.89492 -22.19559 -20.36116 -19.96098 -19.42467 -19.08158 -18.06138 -17.41373 -17.08244 -16.75865 -16.38528 -16.20408 -16.04586 -15.83675 -15.66943 -15.48348 -15.32243 -14.83196 -14.39888 -14.24201 -14.17660 -13.90670 -13.69259 -13.44070 -13.29714 -13.18609 -12.96553 -12.88207 -12.52406 -12.38158 -12.26147 -11.90643 -11.72851 -11.64697 -11.57243 -11.52700 -11.45297 -11.11321 -10.45636 -10.38267 -9.80589 -9.57832 -9.21566 -9.04581 -8.41535 -5.17176 -0.17031 0.26656 0.90228 1.59446 1.62455 1.66920 1.85735 1.86686 2.23146 2.63026 2.86901 3.18962 3.24468 3.36471 3.46304 3.56790 3.66604 3.82600 3.86343 3.99916 4.09301 4.11076 4.13793 4.20072 4.26347 4.39342 4.41078 4.52022 4.61232 4.67772 4.72822 4.81685 4.83520 4.87965 4.96349 5.00334 5.08415 5.16345 5.21968 5.25851 5.29733 5.31229 5.38759 5.40076 5.67532 5.79874 6.20212 6.33463 6.47926 6.86784 6.92892 7.11900 7.72974 8.40547 9.03058 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002696 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.844365 B =10382.907465 C =11184.318007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.075 4.075 3 C 0.139 3.861 4 N -0.624 5.624 5 C -0.343 4.343 6 H 0.062 0.938 7 C -0.075 4.075 8 N -0.941 5.941 9 Si 1.112 2.888 10 H -0.292 1.292 11 H -0.283 1.283 12 H -0.279 1.279 13 C 0.143 3.857 14 C -0.101 4.101 15 H 0.087 0.913 16 C 0.108 3.892 17 N -0.610 5.610 18 C 0.607 3.393 19 O -0.585 6.585 20 C -0.250 4.250 21 C 0.147 3.853 22 N -0.552 5.552 23 H 0.440 0.560 24 C 0.260 3.740 25 N -0.511 5.511 26 C 0.132 3.868 27 C -0.183 4.183 28 C -0.046 4.046 29 C -0.134 4.134 30 C 0.125 3.875 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.259 0.741 37 H 0.026 0.974 38 H 0.042 0.958 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.219 0.781 42 H 0.199 0.801 43 H 0.172 0.828 44 H 0.131 0.869 45 H 0.077 0.923 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.977 -20.326 -7.542 21.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.077 4.077 3 C 0.013 3.987 4 N -0.350 5.350 5 C -0.471 4.471 6 H 0.080 0.920 7 C -0.272 4.272 8 N -0.584 5.584 9 Si 0.938 3.062 10 H -0.219 1.219 11 H -0.210 1.210 12 H -0.205 1.205 13 C 0.017 3.983 14 C -0.122 4.122 15 H 0.105 0.895 16 C -0.014 4.014 17 N -0.341 5.341 18 C 0.399 3.601 19 O -0.467 6.467 20 C -0.261 4.261 21 C 0.013 3.987 22 N -0.157 5.157 23 H 0.282 0.718 24 C 0.028 3.972 25 N -0.224 5.224 26 C -0.033 4.033 27 C -0.204 4.204 28 C -0.073 4.073 29 C -0.141 4.141 30 C 0.003 3.997 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.120 0.880 41 H 0.235 0.765 42 H 0.216 0.784 43 H 0.189 0.811 44 H 0.149 0.851 45 H 0.095 0.905 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.573 -20.181 -5.859 21.022 hybrid contribution -0.060 0.393 -1.867 1.908 sum -0.633 -19.788 -7.725 21.252 Atomic orbital electron populations 1.21528 0.92294 1.01426 1.01929 1.22134 0.96590 0.95217 0.93787 1.21876 0.96950 0.94006 0.85866 1.45431 1.72958 1.09648 1.06922 1.19881 1.35560 0.94436 0.97232 0.91965 1.26866 0.96738 1.04681 0.98888 1.70964 1.11308 1.34555 1.41608 0.82833 0.74547 0.74884 0.73926 1.21861 1.21006 1.20456 1.21834 0.93862 0.85019 0.97552 1.22947 0.97874 0.94690 0.96646 0.89502 1.22666 0.98831 0.98661 0.81281 1.48641 1.63331 1.07637 1.14541 1.17066 0.78119 0.80847 0.84080 1.90734 1.50061 1.84457 1.21440 1.19773 1.08043 0.91431 1.06817 1.22809 0.94619 0.87904 0.93371 1.41362 1.36140 1.03435 1.34806 0.71796 1.18535 0.94940 0.88957 0.94738 1.66588 1.24916 1.05546 1.25372 1.23156 0.89471 1.01312 0.89315 1.22315 1.02288 0.93548 1.02206 1.21249 0.95647 0.95015 0.95369 1.19698 1.01010 0.92679 1.00680 1.22027 0.99016 0.83031 0.95668 0.93412 0.91501 0.92332 0.93225 0.95339 0.93073 0.95630 0.93991 0.89274 0.88022 0.76460 0.78397 0.81095 0.85146 0.90472 0.90954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.35 8.59 71.98 0.62 -2.73 16 2 C -0.07 -2.34 1.07 -50.81 -0.05 -2.40 16 3 C 0.14 5.32 6.36 86.38 0.55 5.87 16 4 N -0.62 -29.71 3.35 -687.73 -2.30 -32.02 16 5 C -0.34 -18.72 10.17 84.04 0.85 -17.86 16 6 H 0.06 3.42 8.02 -2.91 -0.02 3.40 16 7 C -0.08 -4.17 5.02 84.86 0.43 -3.74 16 8 N -0.94 -55.06 12.75 21.65 0.28 -54.79 16 9 Si 1.11 49.85 30.03 68.60 2.06 51.91 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 11 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 13 C 0.14 5.92 4.75 86.52 0.41 6.33 16 14 C -0.10 -3.17 3.71 -9.28 -0.03 -3.21 16 15 H 0.09 2.76 7.93 -2.39 -0.02 2.74 16 16 C 0.11 2.58 4.90 86.29 0.42 3.00 16 17 N -0.61 -16.64 3.34 -817.08 -2.73 -19.37 16 18 C 0.61 18.26 7.81 86.52 0.68 18.94 16 19 O -0.59 -21.59 17.07 -4.26 -0.07 -21.66 16 20 C -0.25 -6.29 5.94 -19.05 -0.11 -6.40 16 21 C 0.15 2.55 9.97 83.68 0.83 3.39 16 22 N -0.55 -9.01 5.97 -191.79 -1.15 -10.16 16 23 H 0.44 4.32 8.96 -92.70 -0.83 3.49 16 24 C 0.26 5.84 8.41 133.76 1.13 6.96 16 25 N -0.51 -10.82 10.39 -192.80 -2.00 -12.82 16 26 C 0.13 2.09 11.14 84.81 0.95 3.04 16 27 C -0.18 -2.94 10.10 22.38 0.23 -2.72 16 28 C -0.05 -1.07 10.15 22.56 0.23 -0.84 16 29 C -0.13 -3.43 6.31 -20.07 -0.13 -3.56 16 30 C 0.13 3.60 6.27 86.50 0.54 4.14 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.05 1.90 7.90 -2.39 -0.02 1.88 16 35 H 0.03 1.08 7.16 -2.39 -0.02 1.07 16 36 H 0.26 15.02 6.27 -92.71 -0.58 14.44 16 37 H 0.03 1.05 7.10 -2.39 -0.02 1.03 16 38 H 0.04 1.98 6.62 -2.38 -0.02 1.97 16 39 H 0.09 1.91 6.68 -2.39 -0.02 1.90 16 40 H 0.10 1.96 6.50 -2.38 -0.02 1.94 16 41 H 0.22 2.41 6.04 -2.91 -0.02 2.39 16 42 H 0.20 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 44 H 0.13 3.20 7.94 -2.91 -0.02 3.18 16 45 H 0.08 2.26 7.58 -2.39 -0.02 2.24 16 46 H 0.07 2.06 7.11 -2.39 -0.02 2.04 16 Total: -1.00 -76.13 367.25 2.00 -74.13 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.39 Total: 16.55 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: 7.53 Total: 8.21 kcal Atomic # 7 Polarization: -121.24 SS G_CDS: -7.90 Total: -129.14 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.07 Total: -21.66 kcal Atomic # 14 Polarization: 49.85 SS G_CDS: 2.06 Total: 51.91 kcal Total: -76.13 2.00 -74.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092283684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.272 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds