Wall clock time and date at job start Tue Mar 31 2020 23:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48494 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46863 * 299.99734 * 3 2 1 6 6 H 1.48490 * 109.46901 * 59.99715 * 3 2 1 7 7 C 1.38820 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99370 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.32542 * 34.64107 * 10 9 7 12 12 C 1.54075 * 108.96665 * 153.74616 * 10 9 7 13 13 C 1.53974 * 108.10783 * 175.20513 * 12 10 9 14 14 H 1.08997 * 112.99355 * 168.82907 * 13 12 10 15 15 C 1.55427 * 107.20104 * 294.21704 * 13 12 10 16 16 C 1.55411 * 100.25201 * 73.50993 * 15 13 12 17 17 H 1.09001 * 112.48050 * 162.86571 * 16 15 13 18 18 C 1.52985 * 109.32529 * 274.99966 * 10 9 7 19 19 N 1.47789 * 104.13382 * 40.82155 * 16 15 13 20 20 C 1.34784 * 125.85287 * 153.48469 * 19 16 15 21 21 O 1.21613 * 119.99997 * 354.34948 * 20 19 16 22 22 C 1.47379 * 119.99815 * 174.34878 * 20 19 16 23 23 C 1.39250 * 120.83482 * 317.17555 * 22 20 19 24 24 N 1.31917 * 120.96974 * 179.97438 * 23 22 20 25 25 C 1.31918 * 122.71699 * 359.97438 * 24 23 22 26 26 C 1.38696 * 120.79575 * 0.02562 * 25 24 23 27 27 N 1.37752 * 134.30835 * 179.97438 * 26 25 24 28 28 H 0.97004 * 125.55127 * 0.04467 * 27 26 25 29 29 C 1.36557 * 108.88329 * 180.02562 * 27 26 25 30 30 C 1.34641 * 109.66130 * 0.02562 * 29 27 26 31 31 C 1.40990 * 118.83941 * 359.72557 * 26 25 24 32 32 C 1.47071 * 108.28865 * 333.22195 * 19 16 15 33 33 H 0.97001 * 120.00295 * 0.02562 * 1 2 3 34 34 H 0.97007 * 120.00151 * 0.02562 * 9 7 2 35 35 H 1.09001 * 109.32214 * 55.98125 * 12 10 9 36 36 H 1.08995 * 110.54778 * 295.14291 * 12 10 9 37 37 H 1.09008 * 111.23198 * 191.44346 * 15 13 12 38 38 H 1.09004 * 111.23849 * 315.84210 * 15 13 12 39 39 H 1.08997 * 109.53612 * 64.93460 * 18 10 9 40 40 H 1.09001 * 109.53371 * 304.70377 * 18 10 9 41 41 H 1.07997 * 119.51543 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.60283 * 180.02562 * 25 24 23 43 43 H 1.08000 * 125.16956 * 179.97438 * 29 27 26 44 44 H 1.08005 * 126.09589 * 179.97438 * 30 29 27 45 45 H 1.09012 * 109.97641 * 120.69465 * 32 19 16 46 46 H 1.08996 * 109.97966 * 241.97422 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9713 -3.5461 0.5852 12 6 1.1767 -4.7439 0.6451 13 6 1.9138 -6.0904 0.5259 14 1 1.4572 -6.8801 1.1225 15 6 1.9967 -6.4367 -0.9870 16 6 3.0814 -5.4219 -1.4440 17 1 3.5144 -5.6814 -2.4101 18 6 2.4201 -4.0323 -1.4376 19 7 4.0789 -5.4444 -0.3538 20 6 5.3892 -5.1532 -0.4765 21 8 5.8640 -4.9381 -1.5752 22 6 6.2465 -5.0955 0.7209 23 6 5.8037 -4.4756 1.8866 24 7 6.5686 -4.4229 2.9600 25 6 7.7797 -4.9444 2.9989 26 6 8.3134 -5.5839 1.8899 27 7 9.5112 -6.2100 1.6239 28 1 10.2470 -6.3085 2.2483 29 6 9.4937 -6.6696 0.3381 30 6 8.3174 -6.3586 -0.2382 31 6 7.5361 -5.6736 0.7170 32 6 3.3955 -5.8330 0.8891 33 1 -0.4850 0.8400 -0.0004 34 1 0.3555 -2.3881 -0.0002 35 1 0.2264 -4.7995 0.1141 36 1 0.9973 -4.5175 1.6961 37 1 2.3244 -7.4652 -1.1392 38 1 1.0466 -6.2499 -1.4875 39 1 3.1147 -3.2964 -1.8426 40 1 1.5164 -4.0561 -2.0466 41 1 4.8196 -4.0315 1.9121 42 1 8.3627 -4.8726 3.9051 43 1 10.3012 -7.2011 -0.1435 44 1 8.0222 -6.5952 -1.2498 45 1 3.8433 -6.7415 1.2921 46 1 3.4652 -5.0274 1.6200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094954584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:24 Heat of formation + Delta-G solvation = 66.749745 kcal Electronic energy + Delta-G solvation = -30229.550062 eV Core-core repulsion = 26313.250866 eV Total energy + Delta-G solvation = -3916.299196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.98723 -40.74352 -38.46453 -37.75441 -34.72346 -33.00863 -32.39426 -31.19013 -30.83168 -30.11367 -29.45853 -27.81718 -25.79533 -24.52021 -23.62888 -22.78183 -22.12358 -21.09142 -20.98093 -19.69020 -18.92749 -18.21428 -17.61590 -17.04902 -16.72971 -16.03567 -15.35240 -15.14505 -14.96302 -14.83531 -14.61631 -14.29144 -13.73564 -13.53238 -13.37680 -13.17665 -12.92540 -12.82235 -12.71449 -12.53051 -12.26046 -12.17325 -12.02102 -11.71770 -11.56757 -10.96266 -10.91058 -10.78440 -10.43749 -10.36940 -10.18215 -10.10422 -10.03835 -9.63272 -9.49630 -9.38452 -8.85981 -8.84484 -8.40402 -8.11017 -6.90841 -5.72280 -3.00412 0.45795 1.28156 2.45418 2.68908 2.92256 3.10536 3.47687 3.54361 3.56648 3.80027 4.25705 4.45500 4.51611 4.58499 4.62141 4.66850 4.76517 4.95357 4.96902 5.09427 5.14363 5.35536 5.40363 5.49778 5.51958 5.56851 5.63354 5.71900 5.76704 5.81170 5.93772 5.99126 6.00209 6.06392 6.18255 6.25421 6.30232 6.32526 6.35724 6.51883 6.60765 6.65818 6.72366 7.01135 7.08798 7.10939 7.70004 7.77113 7.86717 8.32214 8.46610 9.58277 10.15310 10.49971 11.50410 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003804 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.641162 B = 7359.806265 C = 8605.517758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.902 3.098 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.234 4.234 8 H 0.069 0.931 9 N -0.724 5.724 10 C 0.179 3.821 11 H 0.046 0.954 12 C -0.122 4.122 13 C -0.098 4.098 14 H 0.097 0.903 15 C -0.126 4.126 16 C 0.135 3.865 17 H 0.093 0.907 18 C -0.143 4.143 19 N -0.601 5.601 20 C 0.584 3.416 21 O -0.533 6.533 22 C -0.130 4.130 23 C 0.099 3.901 24 N -0.466 5.466 25 C 0.131 3.869 26 C 0.020 3.980 27 N -0.578 5.578 28 H 0.421 0.579 29 C 0.067 3.933 30 C -0.196 4.196 31 C -0.028 4.028 32 C 0.099 3.901 33 H 0.254 0.746 34 H 0.383 0.617 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.167 0.833 42 H 0.156 0.844 43 H 0.178 0.822 44 H 0.152 0.848 45 H 0.062 0.938 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.144 -20.127 4.252 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.733 3.267 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.364 5.364 10 C 0.069 3.931 11 H 0.064 0.936 12 C -0.160 4.160 13 C -0.117 4.117 14 H 0.115 0.885 15 C -0.164 4.164 16 C 0.032 3.968 17 H 0.111 0.889 18 C -0.184 4.184 19 N -0.335 5.335 20 C 0.372 3.628 21 O -0.410 6.410 22 C -0.136 4.136 23 C -0.052 4.052 24 N -0.174 5.174 25 C -0.036 4.036 26 C -0.089 4.089 27 N -0.181 5.181 28 H 0.259 0.741 29 C -0.063 4.063 30 C -0.221 4.221 31 C -0.040 4.040 32 C -0.024 4.024 33 H 0.063 0.937 34 H 0.217 0.783 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.184 0.816 42 H 0.173 0.827 43 H 0.195 0.805 44 H 0.170 0.830 45 H 0.080 0.920 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.312 -19.401 4.462 25.115 hybrid contribution 0.864 0.639 -0.530 1.199 sum 16.176 -18.762 3.932 25.083 Atomic orbital electron populations 1.69665 1.05045 1.25436 1.58066 1.24696 0.95460 0.97554 1.03107 0.86179 0.78978 0.84362 0.77155 1.20549 1.21904 1.21868 1.19271 0.90943 0.84146 1.42197 0.91350 1.42441 1.05710 0.99780 1.88485 1.20454 0.94191 0.86008 0.92414 0.93568 1.22331 0.99052 0.93127 1.01505 1.22622 0.94024 0.98628 0.96460 0.88493 1.23068 0.99270 0.98282 0.95807 1.22427 0.86970 0.96745 0.90668 0.88887 1.22808 1.00151 0.94161 1.01290 1.48483 1.06818 1.67237 1.10938 1.17497 0.80327 0.76833 0.88170 1.90782 1.73293 1.49808 1.27118 1.20341 0.94290 1.03347 0.95634 1.22901 0.99513 0.96161 0.86656 1.67648 1.04362 1.17277 1.28139 1.21933 0.92179 0.94005 0.95475 1.19324 0.88322 1.03375 0.97922 1.41736 1.14546 1.48881 1.12921 0.74100 1.22110 0.99722 1.00482 0.84008 1.20728 0.94125 1.06564 1.00694 1.18137 0.92831 0.99085 0.93928 1.22382 0.92863 0.99870 0.87241 0.93651 0.78323 0.91571 0.91330 0.91351 0.89496 0.91800 0.91386 0.81634 0.82689 0.80517 0.83049 0.91988 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.38 13.06 55.49 0.72 -27.66 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 3 Si 0.90 23.11 29.55 -169.99 -5.02 18.09 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 7 C -0.23 -6.61 9.92 -15.06 -0.15 -6.76 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.72 -18.00 5.10 -52.89 -0.27 -18.27 16 10 C 0.18 3.48 2.39 -67.38 -0.16 3.32 16 11 H 0.05 0.95 5.64 -51.93 -0.29 0.65 16 12 C -0.12 -1.85 5.07 -25.66 -0.13 -1.98 16 13 C -0.10 -1.16 4.27 -87.92 -0.38 -1.54 16 14 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 15 C -0.13 -1.49 6.21 -24.16 -0.15 -1.64 16 16 C 0.13 2.04 4.01 -65.48 -0.26 1.77 16 17 H 0.09 1.43 7.98 -51.93 -0.41 1.02 16 18 C -0.14 -2.63 5.30 -26.28 -0.14 -2.77 16 19 N -0.60 -9.18 2.37 -162.94 -0.39 -9.57 16 20 C 0.58 10.07 7.40 -12.54 -0.09 9.97 16 21 O -0.53 -10.77 16.99 5.27 0.09 -10.68 16 22 C -0.13 -2.03 5.45 -104.63 -0.57 -2.60 16 23 C 0.10 1.49 9.64 -17.14 -0.17 1.32 16 24 N -0.47 -6.57 10.30 -12.85 -0.13 -6.71 16 25 C 0.13 1.46 11.21 -17.35 -0.19 1.26 16 26 C 0.02 0.23 7.31 -83.99 -0.61 -0.39 16 27 N -0.58 -4.24 6.13 -10.63 -0.07 -4.30 16 28 H 0.42 1.47 8.96 -40.82 -0.37 1.10 16 29 C 0.07 0.52 11.83 -16.72 -0.20 0.32 16 30 C -0.20 -2.30 10.49 -39.75 -0.42 -2.72 16 31 C -0.03 -0.39 6.01 -106.58 -0.64 -1.03 16 32 C 0.10 1.27 4.61 -2.83 -0.01 1.26 16 33 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 35 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.28 16 38 H 0.09 0.98 7.80 -51.93 -0.40 0.58 16 39 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 40 H 0.07 1.24 8.01 -51.93 -0.42 0.82 16 41 H 0.17 2.53 5.74 -52.49 -0.30 2.23 16 42 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 45 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 46 H 0.08 1.06 4.30 -51.93 -0.22 0.83 16 LS Contribution 366.72 15.07 5.53 5.53 Total: -1.00 -35.83 366.72 -9.99 -45.81 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.08 Total: 10.40 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -4.37 Total: -2.65 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -0.13 Total: -66.50 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.09 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.83 -9.99 -45.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094954584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.562 kcal (2) G-P(sol) polarization free energy of solvation -35.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds