Wall clock time and date at job start Tue Mar 31 2020 23:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48494 * 109.46899 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.46863 * 299.99734 * 3 2 1 6 6 H 1.48490 * 109.46901 * 59.99715 * 3 2 1 7 7 C 1.38820 * 119.99800 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99370 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00162 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.32542 * 34.64107 * 10 9 7 12 12 C 1.54075 * 108.96665 * 153.74616 * 10 9 7 13 13 C 1.53974 * 108.10783 * 175.20513 * 12 10 9 14 14 H 1.08997 * 112.99355 * 168.82907 * 13 12 10 15 15 C 1.55427 * 107.20104 * 294.21704 * 13 12 10 16 16 C 1.55411 * 100.25201 * 73.50993 * 15 13 12 17 17 H 1.09001 * 112.48050 * 162.86571 * 16 15 13 18 18 C 1.52985 * 109.32529 * 274.99966 * 10 9 7 19 19 N 1.47789 * 104.13382 * 40.82155 * 16 15 13 20 20 C 1.34784 * 125.85287 * 153.48469 * 19 16 15 21 21 O 1.21613 * 119.99997 * 354.34948 * 20 19 16 22 22 C 1.47379 * 119.99815 * 174.34878 * 20 19 16 23 23 C 1.39250 * 120.83482 * 317.17555 * 22 20 19 24 24 N 1.31917 * 120.96974 * 179.97438 * 23 22 20 25 25 C 1.31918 * 122.71699 * 359.97438 * 24 23 22 26 26 C 1.38696 * 120.79575 * 0.02562 * 25 24 23 27 27 N 1.37752 * 134.30835 * 179.97438 * 26 25 24 28 28 H 0.97004 * 125.55127 * 0.04467 * 27 26 25 29 29 C 1.36557 * 108.88329 * 180.02562 * 27 26 25 30 30 C 1.34641 * 109.66130 * 0.02562 * 29 27 26 31 31 C 1.40990 * 118.83941 * 359.72557 * 26 25 24 32 32 C 1.47071 * 108.28865 * 333.22195 * 19 16 15 33 33 H 0.97001 * 120.00295 * 0.02562 * 1 2 3 34 34 H 0.97007 * 120.00151 * 0.02562 * 9 7 2 35 35 H 1.09001 * 109.32214 * 55.98125 * 12 10 9 36 36 H 1.08995 * 110.54778 * 295.14291 * 12 10 9 37 37 H 1.09008 * 111.23198 * 191.44346 * 15 13 12 38 38 H 1.09004 * 111.23849 * 315.84210 * 15 13 12 39 39 H 1.08997 * 109.53612 * 64.93460 * 18 10 9 40 40 H 1.09001 * 109.53371 * 304.70377 * 18 10 9 41 41 H 1.07997 * 119.51543 * 359.97438 * 23 22 20 42 42 H 1.07997 * 119.60283 * 180.02562 * 25 24 23 43 43 H 1.08000 * 125.16956 * 179.97438 * 29 27 26 44 44 H 1.08005 * 126.09589 * 179.97438 * 30 29 27 45 45 H 1.09012 * 109.97641 * 120.69465 * 32 19 16 46 46 H 1.08996 * 109.97966 * 241.97422 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3463 0.0006 5 1 1.8914 2.3963 -1.2125 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9713 -3.5461 0.5852 12 6 1.1767 -4.7439 0.6451 13 6 1.9138 -6.0904 0.5259 14 1 1.4572 -6.8801 1.1225 15 6 1.9967 -6.4367 -0.9870 16 6 3.0814 -5.4219 -1.4440 17 1 3.5144 -5.6814 -2.4101 18 6 2.4201 -4.0323 -1.4376 19 7 4.0789 -5.4444 -0.3538 20 6 5.3892 -5.1532 -0.4765 21 8 5.8640 -4.9381 -1.5752 22 6 6.2465 -5.0955 0.7209 23 6 5.8037 -4.4756 1.8866 24 7 6.5686 -4.4229 2.9600 25 6 7.7797 -4.9444 2.9989 26 6 8.3134 -5.5839 1.8899 27 7 9.5112 -6.2100 1.6239 28 1 10.2470 -6.3085 2.2483 29 6 9.4937 -6.6696 0.3381 30 6 8.3174 -6.3586 -0.2382 31 6 7.5361 -5.6736 0.7170 32 6 3.3955 -5.8330 0.8891 33 1 -0.4850 0.8400 -0.0004 34 1 0.3555 -2.3881 -0.0002 35 1 0.2264 -4.7995 0.1141 36 1 0.9973 -4.5175 1.6961 37 1 2.3244 -7.4652 -1.1392 38 1 1.0466 -6.2499 -1.4875 39 1 3.1147 -3.2964 -1.8426 40 1 1.5164 -4.0561 -2.0466 41 1 4.8196 -4.0315 1.9121 42 1 8.3627 -4.8726 3.9051 43 1 10.3012 -7.2011 -0.1435 44 1 8.0222 -6.5952 -1.2498 45 1 3.8433 -6.7415 1.2921 46 1 3.4652 -5.0274 1.6200 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094954584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:23 Heat of formation + Delta-G solvation = 41.676273 kcal Electronic energy + Delta-G solvation = -30230.637330 eV Core-core repulsion = 26313.250866 eV Total energy + Delta-G solvation = -3917.386464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.87334 -41.94371 -39.60854 -38.88170 -36.54053 -34.36267 -33.63824 -32.80743 -32.04901 -31.01102 -30.52049 -29.45770 -26.98204 -25.71334 -25.53064 -23.71272 -23.23346 -22.46949 -21.92671 -20.79096 -20.26264 -19.22931 -19.15579 -18.59659 -17.80072 -17.28403 -16.58494 -16.43184 -16.16254 -15.89475 -15.81052 -15.66647 -15.27157 -14.97259 -14.59523 -14.54942 -14.21103 -13.98738 -13.78482 -13.60952 -13.50453 -13.43812 -13.24808 -12.98275 -12.94544 -12.83231 -12.76508 -12.21732 -12.11786 -11.96181 -11.62520 -11.46410 -11.35337 -11.22052 -10.96753 -10.86577 -10.53017 -9.69139 -9.67802 -9.02620 -8.98998 -7.97920 -5.24566 -0.49848 0.33254 1.40729 1.41361 1.51263 1.53417 1.76722 1.91118 2.06286 2.51841 2.77671 3.26098 3.34661 3.47774 3.50766 3.60968 3.72709 3.79279 3.87658 4.06056 4.10364 4.10881 4.21232 4.27096 4.37619 4.42366 4.43504 4.59370 4.60266 4.66024 4.69736 4.80248 4.83808 4.89533 5.04461 5.11805 5.12305 5.24082 5.31773 5.35309 5.37504 5.45339 5.48328 5.52352 5.56305 5.78510 6.26143 6.46568 6.56349 6.87942 7.04387 7.32252 8.09287 8.33165 9.25262 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011437 B = 0.003804 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2447.641162 B = 7359.806265 C = 8605.517758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.960 3.040 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.235 4.235 8 H 0.057 0.943 9 N -0.734 5.734 10 C 0.176 3.824 11 H 0.030 0.970 12 C -0.113 4.113 13 C -0.081 4.081 14 H 0.141 0.859 15 C -0.112 4.112 16 C 0.132 3.868 17 H 0.087 0.913 18 C -0.133 4.133 19 N -0.601 5.601 20 C 0.577 3.423 21 O -0.579 6.579 22 C -0.159 4.159 23 C 0.094 3.906 24 N -0.495 5.495 25 C 0.146 3.854 26 C 0.014 3.986 27 N -0.552 5.552 28 H 0.445 0.555 29 C 0.115 3.885 30 C -0.246 4.246 31 C -0.053 4.053 32 C 0.095 3.905 33 H 0.252 0.748 34 H 0.375 0.625 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.015 0.985 40 H 0.068 0.932 41 H 0.149 0.851 42 H 0.198 0.802 43 H 0.230 0.770 44 H 0.135 0.865 45 H 0.085 0.915 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.326 -22.972 5.888 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.367 4.367 8 H 0.075 0.925 9 N -0.374 5.374 10 C 0.068 3.932 11 H 0.048 0.952 12 C -0.152 4.152 13 C -0.100 4.100 14 H 0.159 0.841 15 C -0.150 4.150 16 C 0.029 3.971 17 H 0.105 0.895 18 C -0.174 4.174 19 N -0.332 5.332 20 C 0.366 3.634 21 O -0.460 6.460 22 C -0.165 4.165 23 C -0.056 4.056 24 N -0.204 5.204 25 C -0.020 4.020 26 C -0.097 4.097 27 N -0.156 5.156 28 H 0.287 0.713 29 C -0.018 4.018 30 C -0.271 4.271 31 C -0.065 4.065 32 C -0.026 4.026 33 H 0.061 0.939 34 H 0.207 0.793 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.034 0.966 40 H 0.087 0.913 41 H 0.167 0.833 42 H 0.215 0.785 43 H 0.246 0.754 44 H 0.153 0.847 45 H 0.104 0.896 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 17.516 -22.290 6.148 29.007 hybrid contribution 0.387 1.455 -1.035 1.827 sum 17.903 -20.834 5.113 27.941 Atomic orbital electron populations 1.69782 1.06116 1.25869 1.59616 1.25370 0.96320 1.00398 1.03916 0.85264 0.77838 0.80796 0.77083 1.20376 1.21787 1.21306 1.19446 0.90617 0.85790 1.40870 0.92543 1.42598 1.05424 1.00811 1.88532 1.20671 0.94106 0.85474 0.92959 0.95152 1.22219 0.98603 0.93458 1.00882 1.22676 0.92575 0.97501 0.97221 0.84110 1.23062 0.98170 0.98414 0.95332 1.22417 0.88045 0.95621 0.91043 0.89504 1.22609 0.99225 0.95379 1.00157 1.48585 1.06432 1.66313 1.11900 1.17949 0.81064 0.76029 0.88323 1.90727 1.74319 1.52072 1.28834 1.20224 0.95413 1.05911 0.94976 1.22637 0.99330 0.96478 0.87174 1.67663 1.05888 1.19092 1.27734 1.22573 0.91147 0.91543 0.96727 1.19322 0.89403 1.03985 0.96977 1.41780 1.13790 1.46758 1.13249 0.71256 1.22776 0.98863 0.96922 0.83192 1.20799 0.96185 1.09519 1.00581 1.18497 0.92692 0.99398 0.95879 1.22548 0.93658 1.00432 0.86008 0.93922 0.79252 0.90994 0.91398 0.88473 0.88355 0.96577 0.91329 0.83348 0.78514 0.75400 0.84659 0.89644 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.96 48.95 29.55 68.60 2.03 50.98 16 4 H -0.28 -13.94 7.11 99.48 0.71 -13.24 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.98 16 6 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 7 C -0.24 -13.86 9.92 84.04 0.83 -13.03 16 8 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 9 N -0.73 -38.15 5.10 -321.24 -1.64 -39.79 16 10 C 0.18 7.14 2.39 45.35 0.11 7.25 16 11 H 0.03 1.33 5.64 -2.39 -0.01 1.32 16 12 C -0.11 -3.37 5.07 31.29 0.16 -3.21 16 13 C -0.08 -1.71 4.27 -9.05 -0.04 -1.75 16 14 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.11 -2.38 6.21 32.26 0.20 -2.18 16 16 C 0.13 4.09 4.01 45.87 0.18 4.27 16 17 H 0.09 2.80 7.98 -2.39 -0.02 2.78 16 18 C -0.13 -5.19 5.30 30.89 0.16 -5.02 16 19 N -0.60 -19.09 2.37 -787.66 -1.86 -20.96 16 20 C 0.58 21.36 7.40 86.65 0.64 22.00 16 21 O -0.58 -25.40 16.99 -4.07 -0.07 -25.47 16 22 C -0.16 -5.22 5.45 -19.87 -0.11 -5.33 16 23 C 0.09 2.99 9.64 84.92 0.82 3.81 16 24 N -0.49 -13.93 10.30 -194.56 -2.00 -15.93 16 25 C 0.15 2.96 11.21 84.79 0.95 3.92 16 26 C 0.01 0.28 7.31 39.00 0.29 0.56 16 27 N -0.55 -5.80 6.13 -187.55 -1.15 -6.95 16 28 H 0.44 0.72 8.96 -92.71 -0.83 -0.11 16 29 C 0.11 1.33 11.83 83.13 0.98 2.32 16 30 C -0.25 -5.64 10.49 22.16 0.23 -5.40 16 31 C -0.05 -1.47 6.01 -21.13 -0.13 -1.59 16 32 C 0.10 2.40 4.61 86.85 0.40 2.80 16 33 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 34 H 0.38 20.44 7.80 -92.70 -0.72 19.72 16 35 H 0.07 2.09 8.01 -2.39 -0.02 2.07 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.10 1.94 7.80 -2.39 -0.02 1.92 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 2.62 8.01 -2.39 -0.02 2.60 16 41 H 0.15 5.01 5.74 -2.91 -0.02 4.99 16 42 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 43 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 44 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 46 H 0.07 1.86 4.30 -2.39 -0.01 1.85 16 Total: -1.00 -85.33 366.72 1.23 -84.10 By element: Atomic # 1 Polarization: 28.50 SS G_CDS: -0.51 Total: 27.99 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 6.15 Total: 5.85 kcal Atomic # 7 Polarization: -137.07 SS G_CDS: -6.37 Total: -143.45 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.07 Total: -25.47 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 2.03 Total: 50.98 kcal Total: -85.33 1.23 -84.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094954584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.772 kcal (2) G-P(sol) polarization free energy of solvation -85.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds