Wall clock time and date at job start Tue Mar 31 2020 23:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48496 * 109.47391 * 270.51480 * 3 2 1 5 5 H 1.48502 * 109.47216 * 30.51826 * 3 2 1 6 6 H 1.48504 * 109.46973 * 150.51499 * 3 2 1 7 7 C 1.38810 * 119.99763 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00229 * 353.11473 * 7 2 1 9 9 N 1.36939 * 120.00227 * 173.11402 * 7 2 1 10 10 C 1.46495 * 119.99982 * 174.35528 * 9 7 2 11 11 H 1.09005 * 109.32812 * 14.42838 * 10 9 7 12 12 C 1.53034 * 109.32744 * 254.95481 * 10 9 7 13 13 C 1.53966 * 108.82571 * 295.14775 * 12 10 9 14 14 H 1.08992 * 112.99650 * 168.99932 * 13 12 10 15 15 C 1.55432 * 106.41450 * 293.81768 * 13 12 10 16 16 C 1.55314 * 100.39825 * 73.38274 * 15 13 12 17 17 H 1.09007 * 112.58918 * 163.39155 * 16 15 13 18 18 C 1.52992 * 109.32225 * 134.06928 * 10 9 7 19 19 N 1.47792 * 104.21611 * 40.56042 * 16 15 13 20 20 C 1.34772 * 125.85770 * 153.62807 * 19 16 15 21 21 O 1.21615 * 119.99929 * 185.79886 * 20 19 16 22 22 C 1.47388 * 120.00185 * 5.79628 * 20 19 16 23 23 C 1.39254 * 120.83106 * 9.60202 * 22 20 19 24 24 N 1.31919 * 120.96756 * 179.97438 * 23 22 20 25 25 C 1.31919 * 122.71323 * 359.97438 * 24 23 22 26 26 C 1.38694 * 120.79987 * 0.02948 * 25 24 23 27 27 N 1.37744 * 134.30163 * 180.02562 * 26 25 24 28 28 H 0.97000 * 125.56573 * 359.94822 * 27 26 25 29 29 C 1.36572 * 108.87506 * 179.26866 * 27 26 25 30 30 C 1.34639 * 109.65977 * 0.60286 * 29 27 26 31 31 C 1.40981 * 118.83871 * 359.69964 * 26 25 24 32 32 C 1.47266 * 108.28057 * 333.53502 * 19 16 15 33 33 H 0.97003 * 119.99646 * 0.02562 * 1 2 3 34 34 H 0.97001 * 119.99690 * 354.36111 * 9 7 2 35 35 H 1.09001 * 109.57489 * 54.95091 * 12 10 9 36 36 H 1.09005 * 109.57378 * 175.34335 * 12 10 9 37 37 H 1.08996 * 111.23511 * 191.15869 * 15 13 12 38 38 H 1.08998 * 111.23585 * 315.60126 * 15 13 12 39 39 H 1.08997 * 109.53148 * 185.06736 * 18 10 9 40 40 H 1.09003 * 109.53075 * 305.21631 * 18 10 9 41 41 H 1.07996 * 119.51654 * 359.94979 * 23 22 20 42 42 H 1.07999 * 119.59876 * 179.97438 * 25 24 23 43 43 H 1.08005 * 125.16859 * 180.10821 * 29 27 26 44 44 H 1.08003 * 126.09203 * 179.50184 * 30 29 27 45 45 H 1.09002 * 109.99065 * 241.76895 * 32 19 16 46 46 H 1.08996 * 109.95981 * 120.49088 * 32 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4869 2.0527 -1.4000 5 1 1.4533 2.6495 0.7110 6 1 3.5532 1.4369 0.6891 7 6 2.0102 -1.2022 0.0005 8 1 1.4760 -2.1341 0.1131 9 7 3.3722 -1.2066 -0.1416 10 6 4.1175 -2.4617 -0.0176 11 1 3.4232 -3.3003 -0.0705 12 6 4.8393 -2.4909 1.3316 13 6 5.8957 -1.3711 1.3542 14 1 6.3185 -1.2045 2.3448 15 6 6.9623 -1.7520 0.2896 16 6 6.1759 -1.4509 -1.0154 17 1 6.8254 -1.3743 -1.8874 18 6 5.1264 -2.5666 -1.1628 19 7 5.4523 -0.1961 -0.7218 20 6 5.0524 0.7156 -1.6302 21 8 4.5565 1.7634 -1.2624 22 6 5.2159 0.4429 -3.0694 23 6 5.5938 -0.8201 -3.5180 24 7 5.7405 -1.0673 -4.8055 25 6 5.5421 -0.1519 -5.7343 26 6 5.1633 1.1375 -5.3913 27 7 4.8880 2.2819 -6.1068 28 1 4.9232 2.3656 -7.0725 29 6 4.5428 3.2753 -5.2356 30 6 4.5993 2.8106 -3.9732 31 6 4.9866 1.4546 -4.0290 32 6 5.2415 -0.1140 0.7333 33 1 -0.4850 0.8401 -0.0004 34 1 3.8434 -0.3787 -0.3244 35 1 4.1196 -2.3303 2.1343 36 1 5.3275 -3.4565 1.4637 37 1 7.8461 -1.1194 0.3724 38 1 7.2272 -2.8072 0.3561 39 1 5.6196 -3.5380 -1.1262 40 1 4.6088 -2.4565 -2.1158 41 1 5.7698 -1.6087 -2.8014 42 1 5.6771 -0.4093 -6.7745 43 1 4.2738 4.2830 -5.5161 44 1 4.3859 3.3749 -3.0774 45 1 4.1743 -0.1017 0.9551 46 1 5.7145 0.7852 1.1277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094954585.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:27 Heat of formation + Delta-G solvation = 179.549617 kcal Electronic energy + Delta-G solvation = -32135.927425 eV Core-core repulsion = 28224.519598 eV Total energy + Delta-G solvation = -3911.407827 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.05052 -41.35174 -38.28890 -37.76180 -34.26515 -33.04854 -32.64449 -31.66698 -31.04695 -29.86093 -29.43222 -28.08867 -25.96233 -24.02359 -23.38275 -22.62902 -22.06402 -21.46079 -20.62209 -19.96224 -19.33772 -18.17110 -17.80613 -17.13518 -16.47730 -15.66131 -15.21907 -14.98848 -14.91280 -14.75303 -14.42257 -14.17898 -13.72232 -13.49595 -13.31258 -13.09049 -12.92878 -12.64565 -12.59947 -12.41472 -12.18737 -12.03692 -11.95373 -11.72753 -11.20193 -11.07176 -10.87262 -10.53699 -10.28524 -10.19526 -10.02925 -9.88888 -9.67817 -9.51831 -9.30587 -8.87927 -8.68825 -8.63170 -7.96460 -7.89567 -6.95309 -5.61948 -2.99100 0.57004 1.45453 2.69543 2.90456 3.09314 3.22081 3.72321 3.78516 3.97538 4.13715 4.36507 4.55878 4.67401 4.73524 4.79354 4.82345 4.92292 4.95575 5.14552 5.18811 5.27715 5.34445 5.45750 5.54096 5.58201 5.59761 5.71932 5.75404 5.83612 5.85151 5.91279 6.02468 6.05433 6.14483 6.23697 6.34764 6.42973 6.46258 6.53428 6.59575 6.67434 6.71694 6.76582 6.86434 6.99362 7.30405 7.79690 7.99279 8.15525 8.50063 8.54524 9.36925 10.08344 10.27158 11.52239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011267 B = 0.006313 C = 0.004917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2484.487671 B = 4434.266224 C = 5692.712975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.888 3.112 4 H -0.267 1.267 5 H -0.312 1.312 6 H -0.261 1.261 7 C -0.261 4.261 8 H 0.083 0.917 9 N -0.755 5.755 10 C 0.178 3.822 11 H 0.068 0.932 12 C -0.134 4.134 13 C -0.095 4.095 14 H 0.093 0.907 15 C -0.126 4.126 16 C 0.107 3.893 17 H 0.106 0.894 18 C -0.160 4.160 19 N -0.598 5.598 20 C 0.564 3.436 21 O -0.511 6.511 22 C -0.127 4.127 23 C 0.057 3.943 24 N -0.471 5.471 25 C 0.129 3.871 26 C 0.019 3.981 27 N -0.579 5.579 28 H 0.420 0.580 29 C 0.062 3.938 30 C -0.187 4.187 31 C -0.022 4.022 32 C 0.056 3.944 33 H 0.256 0.744 34 H 0.385 0.615 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.198 0.802 42 H 0.155 0.845 43 H 0.178 0.822 44 H 0.157 0.843 45 H 0.152 0.848 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.282 -0.138 -9.286 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.194 4.194 3 Si 0.721 3.279 4 H -0.195 1.195 5 H -0.241 1.241 6 H -0.187 1.187 7 C -0.390 4.390 8 H 0.101 0.899 9 N -0.413 5.413 10 C 0.067 3.933 11 H 0.086 0.914 12 C -0.174 4.174 13 C -0.113 4.113 14 H 0.111 0.889 15 C -0.164 4.164 16 C 0.003 3.997 17 H 0.124 0.876 18 C -0.199 4.199 19 N -0.334 5.334 20 C 0.355 3.645 21 O -0.389 6.389 22 C -0.132 4.132 23 C -0.093 4.093 24 N -0.180 5.180 25 C -0.037 4.037 26 C -0.091 4.091 27 N -0.182 5.182 28 H 0.258 0.742 29 C -0.068 4.068 30 C -0.212 4.212 31 C -0.034 4.034 32 C -0.064 4.064 33 H 0.066 0.934 34 H 0.236 0.764 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.213 0.787 42 H 0.172 0.828 43 H 0.195 0.805 44 H 0.175 0.825 45 H 0.168 0.832 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 16.996 -0.355 -9.435 19.442 hybrid contribution 0.065 2.144 -0.365 2.176 sum 17.061 1.789 -9.800 19.756 Atomic orbital electron populations 1.69776 1.05395 1.25783 1.57092 1.24806 0.95351 0.97867 1.01349 0.86831 0.77627 0.83594 0.79819 1.19461 1.24118 1.18733 1.19190 0.82029 0.94523 1.43296 0.89917 1.44837 1.05198 1.06025 1.85231 1.20120 0.91588 0.91145 0.90416 0.91378 1.22426 0.97646 0.96320 1.00996 1.22567 0.95449 0.95411 0.97919 0.88867 1.23074 0.97267 1.01903 0.94119 1.22837 0.93710 0.84386 0.98719 0.87650 1.22884 0.97879 0.97304 1.01846 1.48535 1.56044 1.21076 1.07737 1.17546 0.78631 0.83549 0.84747 1.90781 1.42423 1.25131 1.80566 1.20307 1.04995 0.94754 0.93180 1.24417 0.95784 0.96112 0.93025 1.67694 1.15650 1.33028 1.01603 1.21919 0.96534 0.85791 0.99490 1.19314 1.07398 0.90488 0.91918 1.41699 1.59216 1.08426 1.08853 0.74239 1.22146 1.01451 0.94005 0.89207 1.20923 1.08594 0.94111 0.97559 1.18172 0.99460 0.94611 0.91114 1.23728 1.07733 0.96983 0.77982 0.93402 0.76446 0.91073 0.92443 0.91237 0.89528 0.90544 0.90479 0.78663 0.82814 0.80527 0.82494 0.83178 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -30.99 13.97 55.49 0.78 -30.21 16 2 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 3 Si 0.89 25.18 23.27 -169.99 -3.95 21.22 16 4 H -0.27 -7.86 6.12 56.52 0.35 -7.52 16 5 H -0.31 -9.12 7.11 56.52 0.40 -8.72 16 6 H -0.26 -6.91 3.72 56.52 0.21 -6.70 16 7 C -0.26 -7.62 10.39 -15.06 -0.16 -7.78 16 8 H 0.08 2.56 7.92 -52.48 -0.42 2.15 16 9 N -0.75 -18.08 2.97 -53.41 -0.16 -18.24 16 10 C 0.18 3.32 3.15 -67.92 -0.21 3.10 16 11 H 0.07 1.33 7.83 -51.93 -0.41 0.92 16 12 C -0.13 -2.08 5.37 -26.21 -0.14 -2.23 16 13 C -0.09 -1.37 4.33 -87.92 -0.38 -1.75 16 14 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 15 C -0.13 -1.49 6.18 -24.21 -0.15 -1.64 16 16 C 0.11 1.54 2.96 -65.54 -0.19 1.35 16 17 H 0.11 1.35 5.61 -51.92 -0.29 1.06 16 18 C -0.16 -2.42 4.79 -26.28 -0.13 -2.55 16 19 N -0.60 -11.22 1.81 -165.33 -0.30 -11.52 16 20 C 0.56 12.01 6.36 -12.54 -0.08 11.93 16 21 O -0.51 -12.38 9.49 5.26 0.05 -12.33 16 22 C -0.13 -2.43 5.89 -104.63 -0.62 -3.05 16 23 C 0.06 0.95 8.75 -17.14 -0.15 0.80 16 24 N -0.47 -7.27 10.30 -12.85 -0.13 -7.40 16 25 C 0.13 1.71 11.21 -17.35 -0.19 1.52 16 26 C 0.02 0.26 7.31 -84.00 -0.61 -0.35 16 27 N -0.58 -6.04 6.13 -10.63 -0.07 -6.11 16 28 H 0.42 2.57 8.96 -40.82 -0.37 2.21 16 29 C 0.06 0.71 11.83 -16.71 -0.20 0.52 16 30 C -0.19 -3.10 10.10 -39.76 -0.40 -3.51 16 31 C -0.02 -0.39 6.03 -106.59 -0.64 -1.03 16 32 C 0.06 1.08 4.10 -2.72 -0.01 1.07 16 33 H 0.26 8.21 8.31 -40.82 -0.34 7.87 16 34 H 0.38 9.06 0.40 -70.58 -0.03 9.03 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.06 0.72 7.97 -51.93 -0.41 0.31 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.83 7.75 -51.93 -0.40 0.42 16 39 H 0.08 0.89 8.00 -51.93 -0.42 0.48 16 40 H 0.08 1.31 6.19 -51.93 -0.32 0.99 16 41 H 0.20 2.98 1.91 -52.49 -0.10 2.88 16 42 H 0.15 1.40 8.06 -52.49 -0.42 0.97 16 43 H 0.18 1.29 8.06 -52.48 -0.42 0.86 16 44 H 0.16 2.85 7.24 -52.48 -0.38 2.47 16 45 H 0.15 3.50 2.97 -58.47 -0.17 3.32 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 328.91 15.07 4.96 4.96 Total: -1.00 -38.99 328.91 -8.83 -47.82 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -5.63 Total: 15.43 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -4.37 Total: -3.63 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: 0.12 Total: -73.47 kcal Atomic # 8 Polarization: -12.38 SS G_CDS: 0.05 Total: -12.33 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -3.95 Total: 21.22 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -38.99 -8.83 -47.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094954585.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.370 kcal (2) G-P(sol) polarization free energy of solvation -38.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds